Wall clock time and date at job start Wed Apr 1 2020 03:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47086 * 2 1 4 4 C 1.52997 * 109.47452 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47141 * 305.00058 * 4 3 2 6 6 C 1.50695 * 109.46981 * 184.99882 * 4 3 2 7 7 O 1.21274 * 120.00413 * 330.27185 * 6 4 3 8 8 N 1.34784 * 119.99635 * 150.00143 * 6 4 3 9 9 C 1.46744 * 125.32744 * 359.69250 * 8 6 4 10 10 C 1.54106 * 106.62907 * 161.58487 * 9 8 6 11 11 H 1.08996 * 113.48912 * 151.36972 * 10 9 8 12 12 C 1.53958 * 109.44480 * 278.63962 * 10 9 8 13 13 N 1.46777 * 106.62630 * 138.18051 * 12 10 9 14 14 C 1.36934 * 125.33811 * 161.51331 * 13 12 10 15 15 H 1.08003 * 120.00162 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00182 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99607 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00205 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47176 * 90.00424 * 18 16 14 20 20 H 1.48503 * 109.46973 * 210.00055 * 18 16 14 21 21 H 1.48493 * 109.47320 * 329.99887 * 18 16 14 22 22 C 1.46668 * 109.32261 * 341.48378 * 13 12 10 23 23 C 1.53722 * 107.94154 * 0.54268 * 22 13 12 24 24 H 1.09000 * 113.05853 * 140.00492 * 23 22 13 25 25 C 1.46637 * 125.32562 * 179.97438 * 8 6 4 26 26 S 1.81405 * 109.46895 * 65.00009 * 4 3 2 27 27 N 1.65591 * 104.44949 * 60.00073 * 26 4 3 28 28 O 1.42095 * 110.53999 * 171.62802 * 26 4 3 29 29 O 1.42102 * 110.54051 * 308.37212 * 26 4 3 30 30 H 1.09001 * 109.47203 * 299.99794 * 1 2 3 31 31 H 1.08995 * 109.47452 * 60.00476 * 1 2 3 32 32 H 1.09002 * 109.46848 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47203 * 240.00206 * 2 1 3 34 34 H 1.09001 * 109.47409 * 119.99950 * 2 1 3 35 35 H 1.09005 * 109.47351 * 59.99775 * 3 2 1 36 36 H 1.09001 * 109.46956 * 300.00227 * 3 2 1 37 37 H 1.08998 * 110.01078 * 281.00838 * 9 8 6 38 38 H 1.08996 * 110.00831 * 42.38247 * 9 8 6 39 39 H 1.09005 * 110.02476 * 257.46674 * 12 10 9 40 40 H 1.09002 * 110.03398 * 18.88379 * 12 10 9 41 41 H 0.97002 * 119.99446 * 179.97438 * 17 16 14 42 42 H 1.08998 * 109.76505 * 240.92314 * 22 13 12 43 43 H 1.09000 * 109.77497 * 120.16905 * 22 13 12 44 44 H 1.08996 * 109.76398 * 300.43762 * 25 8 6 45 45 H 1.09000 * 109.76224 * 61.16014 * 25 8 6 46 46 H 0.97003 * 120.00270 * 0.02562 * 27 26 4 47 47 H 0.97006 * 119.99810 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9337 0.8531 0.8409 6 6 4.0722 2.8580 0.1232 7 8 3.4142 3.7758 -0.3189 8 7 5.2502 3.1044 0.7301 9 6 6.1320 2.0880 1.3155 10 6 7.5211 2.7395 1.4597 11 1 8.1101 2.3298 2.2802 12 6 8.2547 2.6870 0.1072 13 7 8.9142 3.9871 -0.0637 14 6 9.9439 4.2453 -0.9286 15 1 10.3333 3.4567 -1.5555 16 6 10.4867 5.5209 -1.0005 17 7 10.0119 6.4820 -0.2369 18 14 11.8909 5.8733 -2.1810 19 1 11.3400 6.3033 -3.4913 20 1 12.7457 6.9529 -1.6251 21 1 12.7033 4.6440 -2.3649 22 6 8.2969 4.9664 0.8369 23 6 7.1946 4.2491 1.6327 24 1 7.1554 4.5545 2.6783 25 6 5.8483 4.4305 0.9139 26 16 4.1740 0.7201 -1.5511 27 7 3.5552 1.7012 -2.7328 28 8 5.5812 0.8825 -1.6619 29 8 3.5613 -0.5405 -1.7857 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 5.7558 1.7860 2.2929 38 1 6.1936 1.2228 0.6554 39 1 8.9981 1.8898 0.1164 40 1 7.5400 2.5221 -0.6992 41 1 10.3915 7.3733 -0.2869 42 1 7.8623 5.7793 0.2552 43 1 9.0473 5.3626 1.5210 44 1 6.0088 4.9002 -0.0565 45 1 5.1883 5.0517 1.5194 46 1 3.0046 2.4626 -2.4920 47 1 3.7440 1.5150 -3.6659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279380341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:21 Heat of formation + Delta-G solvation = -104.677521 kcal Electronic energy + Delta-G solvation = -30478.680718 eV Core-core repulsion = 26402.217116 eV Total energy + Delta-G solvation = -4076.463603 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76339 -39.93669 -38.47559 -37.21609 -36.73567 -36.44306 -34.18472 -34.06544 -32.41249 -31.33849 -31.23579 -27.62929 -27.14275 -25.82782 -24.28993 -22.40257 -21.94210 -21.20102 -20.88334 -20.29730 -19.19427 -19.10452 -18.48251 -17.95772 -17.33790 -17.11986 -16.76091 -16.66209 -16.39763 -15.76662 -15.48087 -15.27553 -14.78870 -14.73321 -14.56443 -14.33139 -13.76672 -13.66949 -13.54278 -13.44172 -13.33891 -13.31921 -13.28898 -13.17454 -13.07946 -12.73861 -12.71389 -12.50581 -12.02341 -11.99452 -11.92107 -11.85938 -11.69148 -11.57676 -11.44706 -11.38958 -11.31209 -11.03403 -10.70095 -9.76847 -8.85795 -7.85230 -5.19218 -1.08719 1.28468 1.44422 1.46361 1.54123 1.55029 1.82529 2.39608 2.49375 2.77699 3.15407 3.32264 3.39592 3.57089 3.62476 3.78172 3.84860 3.94154 4.11844 4.18805 4.21266 4.27459 4.50201 4.56581 4.57524 4.70599 4.80173 4.81094 4.85975 4.88073 4.97089 5.03850 5.04811 5.12090 5.20850 5.26187 5.36648 5.41178 5.47240 5.52387 5.62657 5.78476 6.17403 6.22417 6.29368 6.76679 7.13115 7.81159 8.42422 9.24745 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.003305 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.792390 B = 8469.925500 C = 9056.111840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.170 4.170 3 C -0.086 4.086 4 C -0.598 4.598 5 H 0.195 0.805 6 C 0.540 3.460 7 O -0.551 6.551 8 N -0.597 5.597 9 C 0.094 3.906 10 C -0.095 4.095 11 H 0.132 0.868 12 C 0.131 3.869 13 N -0.624 5.624 14 C -0.242 4.242 15 H 0.076 0.924 16 C -0.064 4.064 17 N -0.949 5.949 18 Si 0.976 3.024 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.270 1.270 22 C 0.195 3.805 23 C -0.109 4.109 24 H 0.126 0.874 25 C 0.124 3.876 26 S 2.632 3.368 27 N -1.242 6.242 28 O -0.980 6.980 29 O -0.958 6.958 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.123 0.877 38 H 0.085 0.915 39 H 0.036 0.964 40 H 0.017 0.983 41 H 0.247 0.753 42 H 0.008 0.992 43 H 0.018 0.982 44 H 0.037 0.963 45 H 0.083 0.917 46 H 0.423 0.577 47 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.015 -13.866 5.458 24.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.207 4.207 3 C -0.124 4.124 4 C -0.709 4.709 5 H 0.212 0.788 6 C 0.326 3.674 7 O -0.430 6.430 8 N -0.329 5.329 9 C -0.028 4.028 10 C -0.115 4.115 11 H 0.150 0.850 12 C 0.006 3.994 13 N -0.350 5.350 14 C -0.371 4.371 15 H 0.094 0.906 16 C -0.257 4.257 17 N -0.598 5.598 18 Si 0.804 3.196 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.194 1.194 22 C 0.070 3.930 23 C -0.128 4.128 24 H 0.144 0.856 25 C 0.001 3.999 26 S 2.721 3.279 27 N -0.921 5.921 28 O -0.969 6.969 29 O -0.947 6.947 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.103 0.897 37 H 0.140 0.860 38 H 0.103 0.897 39 H 0.054 0.946 40 H 0.035 0.965 41 H 0.056 0.944 42 H 0.026 0.974 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.101 0.899 46 H 0.252 0.748 47 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -18.653 -14.149 5.143 23.970 hybrid contribution 0.720 1.511 -0.886 1.894 sum -17.933 -12.638 4.257 22.348 Atomic orbital electron populations 1.21720 0.94125 1.02540 1.02372 1.22259 0.98184 0.94703 1.05566 1.21384 0.85096 0.99701 1.06241 1.30571 1.10558 1.04445 1.25311 0.78783 1.19146 0.80184 0.89351 0.78697 1.90721 1.56738 1.46115 1.49434 1.48265 1.19415 1.09575 1.55602 1.22454 0.88692 0.91044 1.00630 1.22965 0.95417 0.94753 0.98334 0.85000 1.21525 0.94632 0.87832 0.95386 1.44526 1.38527 1.06550 1.45430 1.19404 1.08177 0.95231 1.14297 0.90630 1.25594 1.02579 0.95830 1.01725 1.70166 1.44956 1.01600 1.43044 0.85113 0.78847 0.77553 0.78044 1.21701 1.21678 1.19448 1.20771 0.91520 0.90120 0.90574 1.23030 0.92927 0.96331 1.00554 0.85619 1.21828 0.94114 0.84294 0.99663 1.04260 0.73673 0.74093 0.75871 1.52845 1.70654 1.46531 1.22053 1.93666 1.32093 1.86236 1.84892 1.93551 1.77094 1.40800 1.83261 0.91966 0.92462 0.91741 0.88904 0.89803 0.88385 0.89684 0.85966 0.89716 0.94591 0.96483 0.94381 0.97378 0.96414 0.94424 0.89879 0.74754 0.74038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 71.98 0.71 -1.01 16 2 C -0.17 -2.27 5.65 30.59 0.17 -2.10 16 3 C -0.09 -1.26 4.14 30.59 0.13 -1.13 16 4 C -0.60 -10.67 2.14 29.85 0.06 -10.61 16 5 H 0.20 2.05 7.23 -2.39 -0.02 2.03 16 6 C 0.54 14.04 6.61 87.65 0.58 14.62 16 7 O -0.55 -17.11 15.98 -3.01 -0.05 -17.16 16 8 N -0.60 -16.54 3.30 -817.35 -2.70 -19.24 16 9 C 0.09 2.12 5.29 86.71 0.46 2.58 16 10 C -0.10 -2.84 4.16 -9.27 -0.04 -2.87 16 11 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 12 C 0.13 5.52 6.49 86.65 0.56 6.08 16 13 N -0.62 -32.72 3.38 -697.59 -2.36 -35.08 16 14 C -0.24 -14.05 10.25 84.03 0.86 -13.19 16 15 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 16 C -0.06 -3.74 5.48 84.86 0.47 -3.28 16 17 N -0.95 -57.48 10.25 21.65 0.22 -57.26 16 18 Si 0.98 47.00 29.55 68.60 2.03 49.03 16 19 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 C 0.20 9.46 4.77 86.59 0.41 9.88 16 23 C -0.11 -3.64 4.02 -9.49 -0.04 -3.68 16 24 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 25 C 0.12 4.09 6.21 86.59 0.54 4.62 16 26 S 2.63 58.83 5.46 -56.49 -0.31 58.52 16 27 N -1.24 -24.44 9.13 37.02 0.34 -24.10 16 28 O -0.98 -30.64 16.77 -127.65 -2.14 -32.78 16 29 O -0.96 -22.85 14.89 -127.65 -1.90 -24.75 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 1.56 4.90 -2.39 -0.01 1.55 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.08 1.24 6.96 -2.39 -0.02 1.22 16 37 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.08 1.87 6.29 -2.39 -0.02 1.86 16 39 H 0.04 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.02 0.79 7.72 -2.39 -0.02 0.77 16 41 H 0.25 14.55 8.31 -92.71 -0.77 13.77 16 42 H 0.01 0.45 6.73 -2.39 -0.02 0.43 16 43 H 0.02 0.95 7.38 -2.39 -0.02 0.93 16 44 H 0.04 1.57 7.29 -2.39 -0.02 1.55 16 45 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.42 7.68 7.19 -96.75 -0.70 6.98 16 47 H 0.43 7.13 8.96 -96.74 -0.87 6.26 16 Total: -1.00 -80.67 373.38 -2.55 -83.22 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -0.56 Total: 19.66 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: 4.88 Total: -0.07 kcal Atomic # 7 Polarization: -131.18 SS G_CDS: -4.50 Total: -135.68 kcal Atomic # 8 Polarization: -70.59 SS G_CDS: -4.09 Total: -74.68 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 2.03 Total: 49.03 kcal Atomic # 16 Polarization: 58.83 SS G_CDS: -0.31 Total: 58.52 kcal Total: -80.67 -2.55 -83.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279380341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.460 kcal (2) G-P(sol) polarization free energy of solvation -80.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds