Wall clock time and date at job start Wed Apr 1 2020 03:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47156 * 2 1 4 4 C 1.52994 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.09009 * 109.47412 * 54.99516 * 4 3 2 6 6 C 1.50700 * 109.47243 * 174.99719 * 4 3 2 7 7 O 1.21279 * 119.99591 * 35.00223 * 6 4 3 8 8 N 1.34779 * 119.99948 * 214.99926 * 6 4 3 9 9 C 1.46637 * 125.32928 * 0.02562 * 8 6 4 10 10 C 1.53693 * 108.00465 * 179.14236 * 9 8 6 11 11 H 1.09004 * 113.05381 * 106.19668 * 10 9 8 12 12 C 1.53728 * 109.33697 * 232.44228 * 10 9 8 13 13 N 1.46668 * 107.94343 * 93.75024 * 12 10 9 14 14 C 1.36933 * 125.34279 * 179.48654 * 13 12 10 15 15 H 1.08000 * 119.99813 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00346 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00041 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00135 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46752 * 60.00491 * 18 16 14 20 20 H 1.48504 * 109.47143 * 180.02562 * 18 16 14 21 21 H 1.48490 * 109.47476 * 300.00529 * 18 16 14 22 22 C 1.46777 * 109.31996 * 359.45397 * 13 12 10 23 23 C 1.53964 * 106.62837 * 18.51842 * 22 13 12 24 24 H 1.08993 * 113.60965 * 94.61833 * 23 22 13 25 25 C 1.46744 * 125.32426 * 180.02562 * 8 6 4 26 26 S 1.81404 * 109.47083 * 295.00138 * 4 3 2 27 27 N 1.65595 * 104.44689 * 299.99682 * 26 4 3 28 28 O 1.42097 * 110.54251 * 51.62455 * 26 4 3 29 29 O 1.42104 * 110.54157 * 188.37849 * 26 4 3 30 30 H 1.09004 * 109.47010 * 60.00285 * 1 2 3 31 31 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47627 * 300.00019 * 1 2 3 33 33 H 1.08995 * 109.47224 * 239.99357 * 2 1 3 34 34 H 1.09004 * 109.47010 * 119.99715 * 2 1 3 35 35 H 1.08999 * 109.46868 * 59.99517 * 3 2 1 36 36 H 1.09004 * 109.46929 * 299.99765 * 3 2 1 37 37 H 1.08997 * 109.75994 * 59.50557 * 9 8 6 38 38 H 1.08998 * 109.76850 * 298.78329 * 9 8 6 39 39 H 1.09003 * 109.77012 * 213.37194 * 12 10 9 40 40 H 1.08996 * 109.77375 * 334.12949 * 12 10 9 41 41 H 0.97004 * 120.00313 * 179.97438 * 17 16 14 42 42 H 1.08997 * 110.02794 * 259.21924 * 22 13 12 43 43 H 1.09002 * 110.02597 * 137.81283 * 22 13 12 44 44 H 1.09002 * 110.01064 * 79.04786 * 25 8 6 45 45 H 1.08999 * 110.00927 * 317.67626 * 25 8 6 46 46 H 0.97002 * 120.00491 * 0.02562 * 27 26 4 47 47 H 0.97003 * 119.99997 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8528 -0.8409 6 6 4.0724 2.8579 -0.1233 7 8 3.4631 3.7657 0.4017 8 7 5.1987 3.1148 -0.8174 9 6 6.0238 2.1108 -1.4966 10 6 7.1935 2.8389 -2.1776 11 1 8.1442 2.6920 -1.6650 12 6 7.2532 2.4321 -3.6589 13 7 6.4965 3.4237 -4.4306 14 6 6.3283 3.4095 -5.7894 15 1 6.7718 2.6216 -6.3802 16 6 5.5871 4.4070 -6.4076 17 7 5.0462 5.3669 -5.6876 18 14 5.3582 4.3880 -8.2614 19 1 4.6747 3.1322 -8.6629 20 1 4.5338 5.5534 -8.6705 21 1 6.6846 4.4634 -8.9248 22 6 5.9471 4.4332 -3.5176 23 6 6.7518 4.3285 -2.2092 24 1 7.5872 5.0264 -2.1535 25 6 5.7913 4.4431 -1.0116 26 16 4.1740 0.7199 1.5510 27 7 3.5553 1.7012 2.7328 28 8 3.5613 -0.5405 1.7857 29 8 5.5813 0.8824 1.6619 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 5.4278 1.5897 -2.2458 38 1 6.4082 1.3959 -0.7690 39 1 8.2899 2.4160 -3.9953 40 1 6.8078 1.4458 -3.7887 41 1 4.5285 6.0643 -6.1195 42 1 4.8938 4.2290 -3.3255 43 1 6.0623 5.4279 -3.9482 44 1 6.3418 4.7401 -0.1188 45 1 5.0103 5.1719 -1.2283 46 1 3.0041 2.4622 2.4921 47 1 3.7441 1.5150 3.6659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279380349.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:25 Heat of formation + Delta-G solvation = -104.466345 kcal Electronic energy + Delta-G solvation = -30345.753954 eV Core-core repulsion = 26269.299509 eV Total energy + Delta-G solvation = -4076.454445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.77388 -39.94860 -38.50009 -37.23604 -36.74257 -36.46688 -34.21737 -34.05544 -32.55044 -31.26028 -31.22039 -27.64853 -27.06700 -26.02167 -24.28734 -22.44705 -21.93759 -21.20926 -20.85391 -20.35819 -19.17633 -19.00368 -18.59389 -17.96361 -17.61197 -17.07445 -16.84726 -16.48793 -16.30578 -15.80331 -15.51161 -15.26298 -14.85881 -14.80985 -14.60184 -14.30841 -13.90118 -13.67720 -13.55663 -13.40641 -13.35460 -13.33165 -13.28656 -13.22327 -13.08047 -12.79928 -12.67915 -12.54988 -12.06897 -12.03098 -11.99510 -11.88989 -11.85351 -11.62357 -11.38238 -11.35766 -11.26663 -11.06065 -10.71332 -9.77089 -8.88095 -7.80646 -5.21766 -1.09362 1.24181 1.45804 1.48036 1.53734 1.54520 1.86823 2.35379 2.48749 2.74409 3.10237 3.30722 3.42324 3.53590 3.60941 3.74314 3.83343 3.93914 4.06474 4.13993 4.19982 4.31856 4.50964 4.52152 4.55324 4.66210 4.68366 4.81613 4.82557 4.85477 4.92360 4.97127 5.02417 5.12012 5.16477 5.22548 5.30191 5.37946 5.46451 5.47614 5.62960 5.80802 6.21852 6.26519 6.28307 6.74666 7.11103 7.80282 8.40962 9.23115 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.003416 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.063635 B = 8195.307108 C = 8996.786985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.168 4.168 3 C -0.087 4.087 4 C -0.609 4.609 5 H 0.174 0.826 6 C 0.541 3.459 7 O -0.549 6.549 8 N -0.597 5.597 9 C 0.093 3.907 10 C -0.094 4.094 11 H 0.134 0.866 12 C 0.136 3.864 13 N -0.624 5.624 14 C -0.240 4.240 15 H 0.083 0.917 16 C -0.064 4.064 17 N -0.949 5.949 18 Si 0.976 3.024 19 H -0.279 1.279 20 H -0.297 1.297 21 H -0.275 1.275 22 C 0.181 3.819 23 C -0.113 4.113 24 H 0.116 0.884 25 C 0.120 3.880 26 S 2.650 3.350 27 N -1.237 6.237 28 O -0.958 6.958 29 O -0.976 6.976 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.101 0.899 39 H 0.036 0.964 40 H 0.033 0.967 41 H 0.245 0.755 42 H -0.018 1.018 43 H 0.054 0.946 44 H 0.092 0.908 45 H 0.060 0.940 46 H 0.425 0.575 47 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 -9.534 17.003 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.206 4.206 3 C -0.126 4.126 4 C -0.718 4.718 5 H 0.192 0.808 6 C 0.327 3.673 7 O -0.428 6.428 8 N -0.328 5.328 9 C -0.030 4.030 10 C -0.113 4.113 11 H 0.152 0.848 12 C 0.011 3.989 13 N -0.350 5.350 14 C -0.369 4.369 15 H 0.101 0.899 16 C -0.257 4.257 17 N -0.599 5.599 18 Si 0.805 3.195 19 H -0.205 1.205 20 H -0.223 1.223 21 H -0.201 1.201 22 C 0.056 3.944 23 C -0.133 4.133 24 H 0.134 0.866 25 C -0.002 4.002 26 S 2.738 3.262 27 N -0.917 5.917 28 O -0.947 6.947 29 O -0.965 6.965 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.054 0.946 42 H 0.000 1.000 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.255 0.745 47 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -2.429 -9.872 17.119 19.910 hybrid contribution -0.854 1.060 -1.686 2.167 sum -3.283 -8.812 15.433 18.072 Atomic orbital electron populations 1.21725 0.94060 1.02664 1.02309 1.22256 0.98285 0.94567 1.05460 1.21365 0.85608 0.99829 1.05798 1.30666 1.10324 1.04804 1.26010 0.80807 1.19073 0.79503 0.89197 0.79481 1.90699 1.56673 1.46501 1.48913 1.48209 1.24254 1.10155 1.50204 1.22358 0.92201 0.91676 0.96739 1.22781 0.98998 0.94178 0.95367 0.84780 1.21399 0.95325 0.92289 0.89865 1.44548 1.60401 1.27390 1.02649 1.19412 1.26895 1.07991 0.82593 0.89881 1.25589 1.00342 0.97522 1.02252 1.70125 1.39713 1.15400 1.34632 0.85186 0.77679 0.76652 0.80017 1.20549 1.22318 1.20112 1.21132 0.92044 0.94286 0.86921 1.23180 0.98282 0.97532 0.94262 0.86572 1.21902 0.96145 0.83978 0.98224 1.03759 0.73618 0.73801 0.75030 1.52771 1.70608 1.46538 1.21825 1.93547 1.77140 1.41024 1.82944 1.93598 1.31807 1.86315 1.84771 0.92855 0.91463 0.91721 0.90902 0.87876 0.88610 0.90270 0.91293 0.88072 0.94593 0.94925 0.94560 0.99987 0.92809 0.88948 0.92117 0.74544 0.73702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.91 71.98 0.71 -1.67 16 2 C -0.17 -3.03 5.65 30.59 0.17 -2.86 16 3 C -0.09 -1.74 4.21 30.59 0.13 -1.61 16 4 C -0.61 -13.28 2.42 29.85 0.07 -13.21 16 5 H 0.17 3.25 6.87 -2.39 -0.02 3.23 16 6 C 0.54 15.56 6.59 87.66 0.58 16.14 16 7 O -0.55 -17.60 15.79 -3.03 -0.05 -17.65 16 8 N -0.60 -18.01 3.30 -817.64 -2.70 -20.71 16 9 C 0.09 2.54 5.44 86.59 0.47 3.01 16 10 C -0.09 -2.73 4.02 -9.49 -0.04 -2.77 16 11 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 12 C 0.14 5.01 6.62 86.59 0.57 5.58 16 13 N -0.62 -30.48 3.38 -697.59 -2.36 -32.84 16 14 C -0.24 -13.03 10.25 84.03 0.86 -12.17 16 15 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 16 C -0.06 -3.59 5.48 84.86 0.47 -3.12 16 17 N -0.95 -56.22 10.16 21.65 0.22 -56.00 16 18 Si 0.98 45.07 29.55 68.60 2.03 47.10 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.30 -13.92 7.11 99.48 0.71 -13.22 16 21 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 22 C 0.18 8.57 4.92 86.65 0.43 8.99 16 23 C -0.11 -3.79 4.17 -9.32 -0.04 -3.83 16 24 H 0.12 3.51 8.14 -2.39 -0.02 3.49 16 25 C 0.12 3.75 6.00 86.65 0.52 4.27 16 26 S 2.65 54.62 5.46 -56.49 -0.31 54.31 16 27 N -1.24 -19.63 9.13 37.02 0.34 -19.29 16 28 O -0.96 -21.96 14.89 -127.65 -1.90 -23.86 16 29 O -0.98 -25.44 17.59 -127.65 -2.24 -27.69 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.95 4.90 -2.39 -0.01 1.94 16 35 H 0.10 1.64 6.96 -2.39 -0.02 1.62 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 2.00 6.89 -2.39 -0.02 1.98 16 38 H 0.10 2.27 7.71 -2.39 -0.02 2.25 16 39 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.03 1.16 7.44 -2.39 -0.02 1.14 16 41 H 0.24 14.27 8.31 -92.71 -0.77 13.50 16 42 H -0.02 -0.96 7.71 -2.39 -0.02 -0.97 16 43 H 0.05 2.96 6.19 -2.39 -0.01 2.94 16 44 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.06 2.16 7.91 -2.39 -0.02 2.14 16 46 H 0.42 6.45 6.95 -96.74 -0.67 5.78 16 47 H 0.43 4.91 8.96 -96.74 -0.87 4.04 16 Total: -1.00 -74.15 374.16 -2.61 -76.76 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.54 Total: 23.11 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 4.91 Total: -3.25 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -4.50 Total: -128.83 kcal Atomic # 8 Polarization: -65.00 SS G_CDS: -4.19 Total: -69.20 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Atomic # 16 Polarization: 54.62 SS G_CDS: -0.31 Total: 54.31 kcal Total: -74.15 -2.61 -76.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279380349.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.710 kcal (2) G-P(sol) polarization free energy of solvation -74.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds