Wall clock time and date at job start Wed Apr 1 2020 03:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47704 * 2 1 4 4 H 1.09001 * 109.47061 * 54.03423 * 3 2 1 5 5 C 1.50698 * 109.47391 * 174.03754 * 3 2 1 6 6 N 1.34773 * 120.00101 * 300.00545 * 5 3 2 7 7 O 1.21285 * 119.99822 * 119.99964 * 5 3 2 8 8 N 1.46902 * 109.46972 * 294.04161 * 3 2 1 9 9 C 1.47477 * 111.00121 * 81.81983 * 8 3 2 10 10 C 1.53516 * 87.93468 * 138.70123 * 9 8 3 11 11 C 1.52991 * 114.34744 * 220.31639 * 10 9 8 12 12 C 1.53005 * 109.46978 * 271.80269 * 11 10 9 13 13 O 1.42909 * 109.46952 * 184.14291 * 12 11 10 14 14 N 1.46502 * 114.16673 * 87.62080 * 10 9 8 15 15 C 1.34780 * 119.99520 * 201.04539 * 14 10 9 16 16 O 1.21284 * 120.00317 * 5.14251 * 15 14 10 17 17 C 1.50706 * 119.99824 * 185.14305 * 15 14 10 18 18 S 1.80996 * 109.47359 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00171 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99924 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99806 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00127 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99630 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46948 * 60.00316 * 23 21 19 25 25 H 1.48504 * 109.46875 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47479 * 300.00097 * 23 21 19 27 27 C 1.47476 * 110.99927 * 177.79273 * 8 3 2 28 28 H 1.09001 * 109.46680 * 307.36155 * 1 2 3 29 29 H 1.08993 * 109.47241 * 187.36392 * 1 2 3 30 30 H 1.09003 * 109.46770 * 67.35965 * 1 2 3 31 31 H 1.09007 * 109.46979 * 120.00482 * 2 1 3 32 32 H 1.09007 * 109.46985 * 240.00025 * 2 1 3 33 33 H 0.97003 * 119.99959 * 359.97438 * 6 5 3 34 34 H 0.96998 * 119.99926 * 180.02562 * 6 5 3 35 35 H 1.09000 * 113.47487 * 253.46686 * 9 8 3 36 36 H 1.09005 * 113.47792 * 23.93457 * 9 8 3 37 37 H 1.09003 * 109.47160 * 31.79886 * 11 10 9 38 38 H 1.09001 * 109.47358 * 151.80448 * 11 10 9 39 39 H 1.08997 * 109.47265 * 304.13943 * 12 11 10 40 40 H 1.09002 * 109.46946 * 64.14708 * 12 11 10 41 41 H 0.96694 * 113.99592 * 179.97438 * 13 12 11 42 42 H 0.96994 * 120.00569 * 21.04263 * 14 10 9 43 43 H 1.09003 * 109.46745 * 300.00128 * 17 15 14 44 44 H 1.08997 * 109.46947 * 59.99650 * 17 15 14 45 45 H 0.97002 * 119.99710 * 180.02562 * 22 21 19 46 46 H 1.09005 * 113.47907 * 336.06076 * 27 8 3 47 47 H 1.09004 * 113.48264 * 106.52902 * 27 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5923 1.9862 0.8318 5 6 3.5399 1.4449 0.1476 6 7 4.1105 0.8977 1.2391 7 8 4.2334 1.9392 -0.7159 8 7 1.6714 2.0922 -1.2649 9 6 0.2788 2.5757 -1.2244 10 6 0.7583 3.8479 -1.9373 11 6 0.1209 5.1390 -1.4202 12 6 -1.1792 5.4063 -2.1813 13 8 -1.7246 6.6605 -1.7667 14 7 0.7636 3.7504 -3.3991 15 6 1.5314 4.5853 -4.1272 16 8 2.2875 5.3537 -3.5716 17 6 1.4502 4.5639 -5.6319 18 16 2.5926 5.7903 -6.3153 19 6 2.2988 5.5564 -8.0367 20 1 1.5822 4.8190 -8.3669 21 6 2.9893 6.3191 -8.9685 22 7 3.8631 7.2174 -8.5660 23 14 2.6783 6.0705 -10.7936 24 1 1.2499 6.3437 -11.0940 25 1 3.5342 7.0010 -11.5727 26 1 3.0032 4.6699 -11.1649 27 6 2.1018 3.5027 -1.2795 28 1 -0.3633 0.6237 0.8168 29 1 -0.3633 -1.0191 0.1317 30 1 -0.3633 0.3956 -0.9485 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.5558 0.5026 1.9298 34 1 5.0758 0.8996 1.3342 35 1 -0.4069 1.9751 -1.8222 36 1 -0.0890 2.7563 -0.2143 37 1 -0.0951 5.0369 -0.3567 38 1 0.8090 5.9704 -1.5731 39 1 -0.9743 5.4353 -3.2515 40 1 -1.8942 4.6113 -1.9695 41 1 -2.5514 6.8954 -2.2096 42 1 0.2147 3.0852 -3.8429 43 1 1.7201 3.5727 -5.9963 44 1 0.4333 4.8014 -5.9443 45 1 4.3453 7.7507 -9.2172 46 1 2.2206 3.9308 -0.2842 47 1 2.9611 3.6879 -1.9240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282504905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:48 Heat of formation + Delta-G solvation = -83.787104 kcal Electronic energy + Delta-G solvation = -29013.772860 eV Core-core repulsion = 24938.215134 eV Total energy + Delta-G solvation = -4075.557726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.54951 -39.55213 -38.18277 -36.91812 -35.26178 -33.93179 -32.93511 -32.37247 -31.38106 -29.09353 -28.58872 -26.21549 -25.45118 -25.05007 -22.66260 -22.34999 -20.91757 -20.26380 -19.12498 -17.94891 -17.79624 -17.44821 -17.20196 -16.56250 -16.02570 -15.57393 -15.46335 -15.24516 -14.75875 -14.72118 -14.55464 -14.34796 -14.16442 -13.78086 -13.56387 -13.31977 -13.08584 -12.82344 -12.53754 -12.47126 -12.36159 -12.26655 -11.85704 -11.81889 -11.47024 -11.32884 -11.00797 -10.98981 -10.96348 -10.72677 -10.46922 -10.02143 -9.95785 -9.91104 -9.76811 -9.25861 -9.15359 -9.00616 -8.74286 -8.16239 -6.42557 -6.15844 -3.85607 2.39021 3.02204 3.06819 3.18838 3.27286 3.30462 3.33533 3.63865 3.77887 4.01451 4.11476 4.25949 4.37254 4.42277 4.59387 4.71291 4.91122 4.96736 5.01789 5.08822 5.10637 5.17101 5.18990 5.21281 5.28737 5.33741 5.46467 5.51426 5.57934 5.71700 5.77669 5.82541 5.88107 5.89600 5.96526 6.16743 6.20814 6.29151 6.47701 6.66672 6.78278 7.03432 7.56844 7.64528 7.79127 8.02662 8.40460 8.72070 9.29137 10.91490 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.002789 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.180324 B =10038.148883 C =11200.140223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.108 4.108 3 C 0.028 3.972 4 H 0.075 0.925 5 C 0.516 3.484 6 N -0.859 5.859 7 O -0.512 6.512 8 N -0.440 5.440 9 C -0.001 4.001 10 C 0.155 3.845 11 C -0.116 4.116 12 C 0.082 3.918 13 O -0.575 6.575 14 N -0.710 5.710 15 C 0.537 3.463 16 O -0.508 6.508 17 C -0.152 4.152 18 S -0.057 6.057 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.014 3.986 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.398 0.602 34 H 0.403 0.597 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.378 0.622 42 H 0.400 0.600 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.268 0.732 46 H 0.069 0.931 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 -15.589 22.821 30.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.146 4.146 3 C -0.084 4.084 4 H 0.092 0.908 5 C 0.299 3.701 6 N -0.424 5.424 7 O -0.385 6.385 8 N -0.162 5.162 9 C -0.130 4.130 10 C 0.066 3.934 11 C -0.156 4.156 12 C 0.004 3.996 13 O -0.380 6.380 14 N -0.365 5.365 15 C 0.323 3.677 16 O -0.381 6.381 17 C -0.303 4.303 18 S 0.170 5.830 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C -0.116 4.116 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.226 0.774 34 H 0.234 0.766 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.225 0.775 42 H 0.235 0.765 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -9.324 -14.277 22.890 28.544 hybrid contribution -1.857 -1.251 -1.180 2.531 sum -11.181 -15.528 21.710 28.939 Atomic orbital electron populations 1.21968 0.94884 1.02065 1.02618 1.21452 0.96852 0.93272 1.03015 1.22380 0.92741 0.98804 0.94484 0.90777 1.20452 0.90457 0.77625 0.81585 1.43859 1.11620 1.63500 1.23425 1.90853 1.64183 1.43394 1.40064 1.69075 1.04897 1.14186 1.28084 1.24437 0.93381 0.94623 1.00554 1.21130 0.96722 0.93496 0.82016 1.21693 0.96577 0.97977 0.99303 1.22064 0.94225 0.84816 0.98482 1.86466 1.43784 1.38993 1.68760 1.45518 1.48445 1.38475 1.04066 1.20246 0.79011 0.79436 0.88993 1.90704 1.36282 1.38520 1.72571 1.23523 1.06360 1.06858 0.93548 1.85422 1.50243 1.44515 1.02827 1.22834 1.28598 1.25654 0.91320 0.91046 1.24983 0.94524 0.94539 0.99528 1.70011 1.24038 1.21400 1.34837 0.86240 0.78312 0.78228 0.82801 1.19995 1.20846 1.19952 1.24093 0.99747 0.87022 1.00702 0.92815 0.92316 0.91351 0.91407 0.90228 0.77362 0.76649 0.88730 0.89949 0.90750 0.89185 0.93007 0.94169 0.77524 0.76474 0.89258 0.89437 0.92172 0.91247 0.87088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.79 8.78 37.16 0.33 -0.47 16 2 C -0.11 -0.67 5.56 -26.73 -0.15 -0.82 16 3 C 0.03 0.24 1.76 -68.87 -0.12 0.12 16 4 H 0.07 0.48 7.53 -51.93 -0.39 0.09 16 5 C 0.52 5.52 7.17 -10.99 -0.08 5.44 16 6 N -0.86 -5.27 8.73 31.22 0.27 -5.00 16 7 O -0.51 -8.41 15.71 5.55 0.09 -8.32 16 8 N -0.44 -4.85 5.91 -237.97 -1.41 -6.26 16 9 C 0.00 -0.01 4.87 -7.55 -0.04 -0.04 16 10 C 0.16 1.84 0.76 -131.60 -0.10 1.74 16 11 C -0.12 -1.42 5.01 -26.73 -0.13 -1.56 16 12 C 0.08 0.93 6.83 37.16 0.25 1.18 16 13 O -0.57 -6.96 13.66 -35.23 -0.48 -7.44 16 14 N -0.71 -9.60 4.17 -47.35 -0.20 -9.80 16 15 C 0.54 10.15 7.19 -10.98 -0.08 10.07 16 16 O -0.51 -11.60 14.08 5.55 0.08 -11.52 16 17 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 18 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 19 C -0.54 -15.55 9.50 30.94 0.29 -15.26 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.68 13.22 55.49 0.73 -25.95 16 23 Si 0.92 21.80 29.55 -169.99 -5.02 16.77 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.01 0.19 4.98 -7.55 -0.04 0.15 16 28 H 0.05 0.22 8.08 -51.93 -0.42 -0.20 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.39 5.52 -51.93 -0.29 0.11 16 31 H 0.07 0.27 7.40 -51.93 -0.38 -0.11 16 32 H 0.08 0.65 8.14 -51.92 -0.42 0.23 16 33 H 0.40 1.08 8.18 -40.82 -0.33 0.75 16 34 H 0.40 2.30 8.93 -40.82 -0.36 1.93 16 35 H 0.09 0.65 6.84 -51.93 -0.36 0.30 16 36 H 0.08 0.52 7.21 -51.93 -0.37 0.15 16 37 H 0.07 0.76 7.87 -51.93 -0.41 0.35 16 38 H 0.09 1.44 7.60 -51.93 -0.39 1.04 16 39 H 0.05 0.66 7.11 -51.93 -0.37 0.29 16 40 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.38 2.86 9.12 45.56 0.42 3.28 16 42 H 0.40 4.29 8.74 -40.82 -0.36 3.93 16 43 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 46 H 0.07 0.87 7.85 -51.93 -0.41 0.46 16 47 H 0.11 2.09 6.80 -51.93 -0.35 1.74 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -39.86 392.60 -8.41 -48.27 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -6.44 Total: 7.43 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 0.26 Total: -0.31 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: -0.60 Total: -47.01 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.32 Total: -27.29 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -39.86 -8.41 -48.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282504905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.519 kcal (2) G-P(sol) polarization free energy of solvation -39.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds