Wall clock time and date at job start Wed Apr 1 2020 03:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47704 * 2 1 4 4 H 1.09001 * 109.47061 * 54.03423 * 3 2 1 5 5 C 1.50698 * 109.47391 * 174.03754 * 3 2 1 6 6 N 1.34773 * 120.00101 * 300.00545 * 5 3 2 7 7 O 1.21285 * 119.99822 * 119.99964 * 5 3 2 8 8 N 1.46902 * 109.46972 * 294.04161 * 3 2 1 9 9 C 1.47477 * 111.00121 * 81.81983 * 8 3 2 10 10 C 1.53516 * 87.93468 * 138.70123 * 9 8 3 11 11 C 1.52991 * 114.34744 * 220.31639 * 10 9 8 12 12 C 1.53005 * 109.46978 * 271.80269 * 11 10 9 13 13 O 1.42909 * 109.46952 * 184.14291 * 12 11 10 14 14 N 1.46502 * 114.16673 * 87.62080 * 10 9 8 15 15 C 1.34780 * 119.99520 * 201.04539 * 14 10 9 16 16 O 1.21284 * 120.00317 * 5.14251 * 15 14 10 17 17 C 1.50706 * 119.99824 * 185.14305 * 15 14 10 18 18 S 1.80996 * 109.47359 * 179.97438 * 17 15 14 19 19 C 1.76196 * 100.00171 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99924 * 359.97438 * 19 18 17 21 21 C 1.38802 * 119.99806 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00127 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99630 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46948 * 60.00316 * 23 21 19 25 25 H 1.48504 * 109.46875 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47479 * 300.00097 * 23 21 19 27 27 C 1.47476 * 110.99927 * 177.79273 * 8 3 2 28 28 H 1.09001 * 109.46680 * 307.36155 * 1 2 3 29 29 H 1.08993 * 109.47241 * 187.36392 * 1 2 3 30 30 H 1.09003 * 109.46770 * 67.35965 * 1 2 3 31 31 H 1.09007 * 109.46979 * 120.00482 * 2 1 3 32 32 H 1.09007 * 109.46985 * 240.00025 * 2 1 3 33 33 H 0.97003 * 119.99959 * 359.97438 * 6 5 3 34 34 H 0.96998 * 119.99926 * 180.02562 * 6 5 3 35 35 H 1.09000 * 113.47487 * 253.46686 * 9 8 3 36 36 H 1.09005 * 113.47792 * 23.93457 * 9 8 3 37 37 H 1.09003 * 109.47160 * 31.79886 * 11 10 9 38 38 H 1.09001 * 109.47358 * 151.80448 * 11 10 9 39 39 H 1.08997 * 109.47265 * 304.13943 * 12 11 10 40 40 H 1.09002 * 109.46946 * 64.14708 * 12 11 10 41 41 H 0.96694 * 113.99592 * 179.97438 * 13 12 11 42 42 H 0.96994 * 120.00569 * 21.04263 * 14 10 9 43 43 H 1.09003 * 109.46745 * 300.00128 * 17 15 14 44 44 H 1.08997 * 109.46947 * 59.99650 * 17 15 14 45 45 H 0.97002 * 119.99710 * 180.02562 * 22 21 19 46 46 H 1.09005 * 113.47907 * 336.06076 * 27 8 3 47 47 H 1.09004 * 113.48264 * 106.52902 * 27 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5923 1.9862 0.8318 5 6 3.5399 1.4449 0.1476 6 7 4.1105 0.8977 1.2391 7 8 4.2334 1.9392 -0.7159 8 7 1.6714 2.0922 -1.2649 9 6 0.2788 2.5757 -1.2244 10 6 0.7583 3.8479 -1.9373 11 6 0.1209 5.1390 -1.4202 12 6 -1.1792 5.4063 -2.1813 13 8 -1.7246 6.6605 -1.7667 14 7 0.7636 3.7504 -3.3991 15 6 1.5314 4.5853 -4.1272 16 8 2.2875 5.3537 -3.5716 17 6 1.4502 4.5639 -5.6319 18 16 2.5926 5.7903 -6.3153 19 6 2.2988 5.5564 -8.0367 20 1 1.5822 4.8190 -8.3669 21 6 2.9893 6.3191 -8.9685 22 7 3.8631 7.2174 -8.5660 23 14 2.6783 6.0705 -10.7936 24 1 1.2499 6.3437 -11.0940 25 1 3.5342 7.0010 -11.5727 26 1 3.0032 4.6699 -11.1649 27 6 2.1018 3.5027 -1.2795 28 1 -0.3633 0.6237 0.8168 29 1 -0.3633 -1.0191 0.1317 30 1 -0.3633 0.3956 -0.9485 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.5558 0.5026 1.9298 34 1 5.0758 0.8996 1.3342 35 1 -0.4069 1.9751 -1.8222 36 1 -0.0890 2.7563 -0.2143 37 1 -0.0951 5.0369 -0.3567 38 1 0.8090 5.9704 -1.5731 39 1 -0.9743 5.4353 -3.2515 40 1 -1.8942 4.6113 -1.9695 41 1 -2.5514 6.8954 -2.2096 42 1 0.2147 3.0852 -3.8429 43 1 1.7201 3.5727 -5.9963 44 1 0.4333 4.8014 -5.9443 45 1 4.3453 7.7507 -9.2172 46 1 2.2206 3.9308 -0.2842 47 1 2.9611 3.6879 -1.9240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282504905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:47 Heat of formation + Delta-G solvation = -122.659908 kcal Electronic energy + Delta-G solvation = -29015.458511 eV Core-core repulsion = 24938.215134 eV Total energy + Delta-G solvation = -4077.243377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46268 -40.60359 -39.43289 -37.81653 -36.10172 -34.85249 -34.58408 -33.84405 -32.40852 -30.43358 -29.44321 -27.67581 -27.10144 -25.87458 -23.31816 -23.15996 -22.20375 -21.00754 -20.27966 -19.84616 -18.61922 -18.36810 -17.96775 -17.81571 -17.20864 -16.88170 -16.59050 -16.43873 -16.22887 -15.94250 -15.78914 -15.35170 -15.19012 -14.92884 -14.66508 -14.46901 -14.20821 -13.99958 -13.69315 -13.43044 -13.25994 -13.16862 -12.99996 -12.92275 -12.85676 -12.72650 -12.61982 -12.32888 -11.87609 -11.75654 -11.74022 -11.35440 -11.12886 -10.91002 -10.84542 -10.69517 -10.64363 -10.26597 -10.13978 -9.80940 -8.66258 -8.34164 -6.12390 1.26181 1.43569 1.46027 1.56013 1.60100 1.67123 2.20979 2.28405 2.42572 2.88100 2.99528 3.14914 3.27618 3.33340 3.73947 3.84503 3.93729 3.94050 4.09231 4.17492 4.25789 4.28276 4.31134 4.40282 4.47494 4.51332 4.51882 4.59213 4.65223 4.72324 4.85676 4.95976 4.99750 5.13166 5.17916 5.23088 5.28743 5.40967 5.50575 5.60406 5.83123 5.95705 6.19515 6.46658 6.55791 6.90530 7.06400 7.32455 7.35483 8.74968 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.012213 B = 0.002789 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2292.180324 B =10038.148883 C =11200.140223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.102 4.102 3 C 0.029 3.971 4 H 0.105 0.895 5 C 0.507 3.493 6 N -0.835 5.835 7 O -0.583 6.583 8 N -0.459 5.459 9 C 0.022 3.978 10 C 0.148 3.852 11 C -0.113 4.113 12 C 0.084 3.916 13 O -0.597 6.597 14 N -0.685 5.685 15 C 0.538 3.462 16 O -0.556 6.556 17 C -0.127 4.127 18 S -0.153 6.153 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.913 5.913 23 Si 1.000 3.000 24 H -0.260 1.260 25 H -0.279 1.279 26 H -0.263 1.263 27 C 0.013 3.987 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.419 0.581 34 H 0.406 0.594 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.040 0.960 39 H 0.030 0.970 40 H 0.082 0.918 41 H 0.396 0.604 42 H 0.418 0.582 43 H 0.103 0.897 44 H 0.111 0.889 45 H 0.271 0.729 46 H 0.076 0.924 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.423 -18.515 24.095 34.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C -0.083 4.083 4 H 0.122 0.878 5 C 0.292 3.708 6 N -0.401 5.401 7 O -0.462 6.462 8 N -0.182 5.182 9 C -0.106 4.106 10 C 0.060 3.940 11 C -0.152 4.152 12 C 0.006 3.994 13 O -0.405 6.405 14 N -0.339 5.339 15 C 0.323 3.677 16 O -0.433 6.433 17 C -0.279 4.279 18 S 0.074 5.926 19 C -0.694 4.694 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.184 1.184 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.117 4.117 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.074 0.926 33 H 0.250 0.750 34 H 0.237 0.763 35 H 0.139 0.861 36 H 0.135 0.865 37 H 0.120 0.880 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.246 0.754 42 H 0.256 0.744 43 H 0.122 0.878 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.094 0.906 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.020 -17.283 24.236 32.490 hybrid contribution -0.728 -0.423 -1.389 1.624 sum -13.748 -17.706 22.847 32.007 Atomic orbital electron populations 1.21967 0.93303 1.03081 1.03005 1.21464 0.98108 0.91290 1.03163 1.22530 0.91097 1.00436 0.94220 0.87761 1.21049 0.91590 0.76733 0.81457 1.43693 1.12165 1.61663 1.22550 1.90842 1.65796 1.46748 1.42783 1.69002 1.06439 1.12426 1.30375 1.24496 0.92324 0.91730 1.02045 1.21334 0.96441 0.95689 0.80516 1.21659 0.96109 0.96208 1.01222 1.22079 0.94553 0.85828 0.96943 1.86420 1.45189 1.39657 1.69283 1.45202 1.46635 1.36996 1.05086 1.19986 0.79308 0.79880 0.88481 1.90699 1.38595 1.40895 1.73102 1.23353 1.05147 1.04663 0.94688 1.85639 1.53926 1.48494 1.04508 1.23176 1.28931 1.26024 0.91294 0.89901 1.26167 0.93921 0.93880 1.05331 1.70193 1.25319 1.22617 1.36778 0.84986 0.78828 0.78591 0.75464 1.18403 1.20387 1.18714 1.23877 0.98192 0.89584 1.00008 0.90991 0.91481 0.91916 0.88835 0.92603 0.74956 0.76323 0.86081 0.86502 0.88037 0.94133 0.95121 0.90008 0.75399 0.74389 0.87847 0.87071 0.92028 0.90625 0.93339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 8.78 71.98 0.63 -0.18 16 2 C -0.10 -0.92 5.56 30.59 0.17 -0.75 16 3 C 0.03 0.42 1.76 44.17 0.08 0.50 16 4 H 0.10 0.90 7.53 -2.39 -0.02 0.88 16 5 C 0.51 10.67 7.17 87.66 0.63 11.30 16 6 N -0.84 -9.03 8.73 -173.54 -1.51 -10.54 16 7 O -0.58 -20.40 15.71 -3.04 -0.05 -20.45 16 8 N -0.46 -9.47 5.91 -906.80 -5.35 -14.83 16 9 C 0.02 0.28 4.87 83.57 0.41 0.69 16 10 C 0.15 3.37 0.76 4.06 0.00 3.37 16 11 C -0.11 -2.66 5.01 30.59 0.15 -2.51 16 12 C 0.08 1.72 6.83 71.98 0.49 2.21 16 13 O -0.60 -13.63 13.66 -148.98 -2.04 -15.66 16 14 N -0.69 -18.16 4.17 -422.10 -1.76 -19.92 16 15 C 0.54 21.10 7.19 87.66 0.63 21.73 16 16 O -0.56 -27.39 14.08 -3.04 -0.04 -27.43 16 17 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 18 S -0.15 -8.91 20.57 -56.49 -1.16 -10.07 16 19 C -0.55 -32.30 9.50 67.95 0.65 -31.65 16 20 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -58.00 13.22 21.65 0.29 -57.71 16 23 Si 1.00 44.86 29.55 68.60 2.03 46.89 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 27 C 0.01 0.37 4.98 83.57 0.42 0.79 16 28 H 0.07 0.15 8.08 -2.39 -0.02 0.13 16 29 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.06 0.41 5.52 -2.39 -0.01 0.40 16 31 H 0.09 0.36 7.40 -2.38 -0.02 0.34 16 32 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 33 H 0.42 1.01 8.18 -92.71 -0.76 0.25 16 34 H 0.41 4.32 8.93 -92.71 -0.83 3.50 16 35 H 0.12 1.01 6.84 -2.39 -0.02 0.99 16 36 H 0.12 0.77 7.21 -2.38 -0.02 0.75 16 37 H 0.10 1.80 7.87 -2.39 -0.02 1.78 16 38 H 0.04 1.36 7.60 -2.39 -0.02 1.35 16 39 H 0.03 0.75 7.11 -2.39 -0.02 0.73 16 40 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.40 5.33 9.12 -74.06 -0.68 4.66 16 42 H 0.42 8.04 8.74 -92.71 -0.81 7.23 16 43 H 0.10 4.03 8.14 -2.39 -0.02 4.01 16 44 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 45 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 46 H 0.08 1.94 7.85 -2.38 -0.02 1.92 16 47 H 0.05 2.01 6.80 -2.38 -0.02 1.99 16 Total: -1.00 -96.93 392.60 -6.47 -103.41 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: -2.03 Total: 24.57 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 5.16 Total: 1.75 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -8.34 Total: -103.00 kcal Atomic # 8 Polarization: -61.42 SS G_CDS: -2.13 Total: -63.54 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -96.93 -6.47 -103.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282504905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.253 kcal (2) G-P(sol) polarization free energy of solvation -96.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds