Wall clock time and date at job start Wed Apr 1 2020 03:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 N 1.46498 * 109.47327 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99719 * 275.30925 * 4 3 2 6 6 H 1.07999 * 120.00096 * 37.58081 * 5 4 3 7 7 C 1.38813 * 119.99469 * 217.57763 * 5 4 3 8 8 N 1.31611 * 120.00593 * 21.42817 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 201.42171 * 7 5 4 10 10 H 1.48506 * 109.47248 * 60.00202 * 9 7 5 11 11 H 1.48500 * 109.47145 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47410 * 300.00433 * 9 7 5 13 13 C 1.46495 * 120.00057 * 95.30823 * 4 3 2 14 14 C 1.53004 * 109.47073 * 270.00176 * 13 4 3 15 15 N 1.46502 * 109.46847 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99640 * 180.27753 * 15 14 13 17 17 O 1.21559 * 120.00424 * 359.71615 * 16 15 14 18 18 C 1.47839 * 120.00108 * 179.72261 * 16 15 14 19 19 C 1.40022 * 120.56224 * 179.97438 * 18 16 15 20 20 C 1.38353 * 118.29216 * 179.97438 * 19 18 16 21 21 C 1.38358 * 119.30290 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.46261 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.47124 * 89.99758 * 22 21 20 24 24 F 1.39894 * 109.47275 * 210.00253 * 22 21 20 25 25 F 1.39901 * 109.46853 * 330.00245 * 22 21 20 26 26 N 1.31925 * 121.07517 * 0.02562 * 21 20 19 27 27 C 1.31698 * 121.88178 * 359.68098 * 26 21 20 28 28 H 1.09001 * 109.47382 * 60.00520 * 1 2 3 29 29 H 1.09006 * 109.47273 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47486 * 299.99617 * 1 2 3 31 31 H 1.09001 * 109.47282 * 239.99869 * 2 1 3 32 32 H 1.09007 * 109.47068 * 119.99791 * 2 1 3 33 33 H 1.09001 * 109.47156 * 59.99792 * 3 2 1 34 34 H 1.09003 * 109.47275 * 300.00232 * 3 2 1 35 35 H 0.96991 * 120.00571 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47009 * 150.00205 * 13 4 3 37 37 H 1.09000 * 109.47057 * 30.00219 * 13 4 3 38 38 H 1.08999 * 109.47180 * 60.00133 * 14 13 4 39 39 H 1.09003 * 109.46742 * 300.00150 * 14 13 4 40 40 H 0.96995 * 120.00260 * 359.97438 * 15 14 13 41 41 H 1.07999 * 120.85549 * 359.97438 * 19 18 16 42 42 H 1.08003 * 120.35193 * 179.97438 * 20 19 18 43 43 H 1.08002 * 119.71246 * 180.29620 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3327 1.1800 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0512 1.3715 8 7 5.6024 3.1239 0.6479 9 14 6.5988 1.4955 2.6567 10 1 7.0675 0.1242 2.3323 11 1 7.7563 2.4258 2.6647 12 1 5.9555 1.4950 3.9951 13 6 4.2369 1.5601 -1.2641 14 6 4.4917 0.1648 -1.8377 15 7 5.2242 0.2824 -3.1010 16 6 5.5560 -0.8254 -3.7931 17 8 5.2521 -1.9224 -3.3666 18 6 6.2899 -0.7065 -5.0710 19 6 6.6410 -1.8497 -5.7994 20 6 7.3268 -1.6839 -6.9895 21 6 7.6404 -0.4063 -7.4181 22 6 8.3878 -0.2216 -8.7135 23 9 7.4741 -0.1022 -9.7662 24 9 9.1689 0.9367 -8.6402 25 9 9.2143 -1.3281 -8.9368 26 7 7.2965 0.6528 -6.7106 27 6 6.6383 0.5469 -5.5749 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 6.4216 3.6257 0.7815 36 1 5.1894 2.0597 -1.0871 37 1 3.6475 2.1422 -1.9726 38 1 3.5392 -0.3348 -2.0147 39 1 5.0810 -0.4172 -1.1291 40 1 5.4665 1.1577 -3.4415 41 1 6.3831 -2.8354 -5.4414 42 1 7.6145 -2.5428 -7.5778 43 1 6.3702 1.4379 -5.0265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317542590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:19 Heat of formation + Delta-G solvation = -135.269319 kcal Electronic energy + Delta-G solvation = -29565.529917 eV Core-core repulsion = 24810.439063 eV Total energy + Delta-G solvation = -4755.090854 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.51192 -48.06142 -47.93940 -41.04579 -39.12389 -36.59034 -34.58056 -33.22771 -33.00685 -32.62518 -30.86451 -28.67025 -27.00488 -25.62517 -24.40336 -23.97006 -22.97892 -21.13826 -20.81738 -20.16840 -19.17560 -18.89208 -18.81978 -17.98863 -16.98482 -16.64178 -15.59967 -15.45888 -15.30721 -15.01849 -14.94102 -14.75701 -14.54649 -14.40897 -14.39943 -14.22122 -14.10419 -14.09517 -13.87690 -13.56687 -13.40838 -13.02752 -12.87303 -12.72652 -12.42499 -11.64139 -11.60291 -11.26165 -11.00485 -10.78595 -10.60540 -10.49678 -10.45279 -10.43624 -10.14496 -10.00049 -9.91175 -9.90310 -9.68684 -8.77120 -8.55151 -6.70234 -5.91197 -3.50084 -0.10455 0.63032 2.04121 2.49795 3.08234 3.18107 3.32047 3.35407 3.37457 3.40889 3.47976 4.00638 4.09522 4.24818 4.39050 4.41865 4.51223 4.62584 4.97188 5.19729 5.33215 5.39532 5.53873 5.61185 5.69744 5.83532 5.93135 6.00574 6.10067 6.22172 6.32888 6.44353 6.54853 6.58642 6.62666 6.87918 6.91801 7.06679 7.11393 7.41164 7.60989 7.73570 8.20644 8.40497 9.06748 9.68471 10.26058 11.09095 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.002366 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.984812 B =11830.708498 C =12898.176211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.578 5.578 5 C -0.264 4.264 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.886 5.886 9 Si 0.897 3.103 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.280 1.280 13 C 0.136 3.864 14 C 0.095 3.905 15 N -0.707 5.707 16 C 0.551 3.449 17 O -0.533 6.533 18 C -0.145 4.145 19 C -0.017 4.017 20 C -0.129 4.129 21 C 0.049 3.951 22 C 0.524 3.476 23 F -0.170 7.170 24 F -0.162 7.162 25 F -0.171 7.171 26 N -0.444 5.444 27 C 0.139 3.861 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.047 0.953 34 H 0.034 0.966 35 H 0.256 0.744 36 H 0.100 0.900 37 H 0.030 0.970 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.398 0.602 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.118 -6.557 -17.372 18.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.393 4.393 6 H 0.080 0.920 7 C -0.185 4.185 8 N -0.528 5.528 9 Si 0.726 3.274 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.206 1.206 13 C 0.008 3.992 14 C -0.030 4.030 15 N -0.357 5.357 16 C 0.335 3.665 17 O -0.411 6.411 18 C -0.151 4.151 19 C -0.044 4.044 20 C -0.149 4.149 21 C -0.090 4.090 22 C 0.468 3.532 23 F -0.151 7.151 24 F -0.143 7.143 25 F -0.152 7.152 26 N -0.152 5.152 27 C -0.020 4.020 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.117 0.883 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.233 0.767 41 H 0.180 0.820 42 H 0.173 0.827 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 2.257 -6.319 -17.332 18.585 hybrid contribution 0.756 -0.669 0.569 1.159 sum 3.013 -6.988 -16.763 18.409 Atomic orbital electron populations 1.21723 0.97301 1.00434 1.01035 1.22186 0.93855 1.00903 1.01555 1.20952 0.84966 0.92990 0.99011 1.43585 0.99459 1.84759 1.01991 1.18981 1.05727 1.20608 0.93997 0.92045 1.25180 1.00793 0.94474 0.98101 1.69969 1.25757 1.14635 1.42471 0.86473 0.80995 0.78293 0.81673 1.20776 1.21539 1.20577 1.21077 1.00526 0.90952 0.86601 1.22636 0.94926 1.03338 0.82082 1.46116 1.57047 1.08086 1.24485 1.17915 0.79883 0.85258 0.83398 1.90799 1.54631 1.26240 1.69389 1.21486 1.00839 0.95288 0.97440 1.21807 0.91126 1.00058 0.91370 1.21864 0.98184 0.97393 0.97420 1.21126 1.00875 0.91488 0.95505 1.17833 0.77412 0.74351 0.83574 1.93248 1.66673 1.95696 1.59466 1.93250 1.75398 1.49307 1.96355 1.93219 1.73186 1.53537 1.95253 1.67193 1.09736 1.31884 1.06400 1.23103 0.91432 0.97025 0.90485 0.93455 0.93794 0.93175 0.92978 0.92325 0.93497 0.94711 0.93373 0.88277 0.95131 0.92494 0.91248 0.76749 0.82025 0.82656 0.80677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.15 -2.52 6.23 -26.73 -0.17 -2.69 16 3 C 0.15 2.91 5.72 -4.04 -0.02 2.88 16 4 N -0.58 -13.27 2.43 -173.24 -0.42 -13.69 16 5 C -0.26 -6.77 9.45 -15.06 -0.14 -6.91 16 6 H 0.06 1.60 7.92 -52.49 -0.42 1.18 16 7 C 0.02 0.39 4.95 -17.43 -0.09 0.31 16 8 N -0.89 -23.77 11.47 55.49 0.64 -23.14 16 9 Si 0.90 20.74 29.60 -169.99 -5.03 15.71 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.14 2.81 5.45 -4.04 -0.02 2.78 16 14 C 0.09 1.75 6.00 -4.04 -0.02 1.73 16 15 N -0.71 -10.44 5.51 -61.25 -0.34 -10.78 16 16 C 0.55 8.18 7.78 -12.33 -0.10 8.08 16 17 O -0.53 -9.75 16.42 5.31 0.09 -9.66 16 18 C -0.15 -1.68 5.89 -104.82 -0.62 -2.30 16 19 C -0.02 -0.17 9.72 -38.87 -0.38 -0.55 16 20 C -0.13 -1.10 9.42 -39.50 -0.37 -1.47 16 21 C 0.05 0.51 6.30 -82.51 -0.52 -0.01 16 22 C 0.52 5.14 3.43 36.01 0.12 5.26 16 23 F -0.17 -1.69 17.30 2.25 0.04 -1.65 16 24 F -0.16 -1.80 17.03 2.25 0.04 -1.76 16 25 F -0.17 -1.51 16.43 2.25 0.04 -1.47 16 26 N -0.44 -5.11 9.94 -9.14 -0.09 -5.20 16 27 C 0.14 1.47 10.71 -17.13 -0.18 1.28 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.92 6.64 -51.93 -0.34 0.58 16 32 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 33 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 35 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 36 H 0.10 2.31 5.52 -51.93 -0.29 2.02 16 37 H 0.03 0.58 7.86 -51.93 -0.41 0.17 16 38 H 0.06 1.07 6.64 -51.93 -0.34 0.73 16 39 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.40 4.78 6.54 -40.82 -0.27 4.51 16 41 H 0.16 1.44 7.74 -52.49 -0.41 1.03 16 42 H 0.16 0.88 7.59 -52.48 -0.40 0.49 16 43 H 0.18 1.46 6.42 -52.49 -0.34 1.12 16 LS Contribution 376.21 15.07 5.67 5.67 Total: -1.00 -29.71 376.21 -6.80 -36.51 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -5.28 Total: 2.77 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -2.14 Total: 6.69 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: -0.21 Total: -52.80 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.11 Total: -4.88 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.71 -6.80 -36.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317542590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.760 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds