Wall clock time and date at job start Wed Apr 1 2020 03:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47107 * 2 1 4 4 N 1.46498 * 109.47327 * 180.02562 * 3 2 1 5 5 C 1.36942 * 119.99719 * 275.30925 * 4 3 2 6 6 H 1.07999 * 120.00096 * 37.58081 * 5 4 3 7 7 C 1.38813 * 119.99469 * 217.57763 * 5 4 3 8 8 N 1.31611 * 120.00593 * 21.42817 * 7 5 4 9 9 Si 1.86800 * 119.99650 * 201.42171 * 7 5 4 10 10 H 1.48506 * 109.47248 * 60.00202 * 9 7 5 11 11 H 1.48500 * 109.47145 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47410 * 300.00433 * 9 7 5 13 13 C 1.46495 * 120.00057 * 95.30823 * 4 3 2 14 14 C 1.53004 * 109.47073 * 270.00176 * 13 4 3 15 15 N 1.46502 * 109.46847 * 180.02562 * 14 13 4 16 16 C 1.34772 * 119.99640 * 180.27753 * 15 14 13 17 17 O 1.21559 * 120.00424 * 359.71615 * 16 15 14 18 18 C 1.47839 * 120.00108 * 179.72261 * 16 15 14 19 19 C 1.40022 * 120.56224 * 179.97438 * 18 16 15 20 20 C 1.38353 * 118.29216 * 179.97438 * 19 18 16 21 21 C 1.38358 * 119.30290 * 359.97438 * 20 19 18 22 22 C 1.50701 * 119.46261 * 179.97438 * 21 20 19 23 23 F 1.39897 * 109.47124 * 89.99758 * 22 21 20 24 24 F 1.39894 * 109.47275 * 210.00253 * 22 21 20 25 25 F 1.39901 * 109.46853 * 330.00245 * 22 21 20 26 26 N 1.31925 * 121.07517 * 0.02562 * 21 20 19 27 27 C 1.31698 * 121.88178 * 359.68098 * 26 21 20 28 28 H 1.09001 * 109.47382 * 60.00520 * 1 2 3 29 29 H 1.09006 * 109.47273 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47486 * 299.99617 * 1 2 3 31 31 H 1.09001 * 109.47282 * 239.99869 * 2 1 3 32 32 H 1.09007 * 109.47068 * 119.99791 * 2 1 3 33 33 H 1.09001 * 109.47156 * 59.99792 * 3 2 1 34 34 H 1.09003 * 109.47275 * 300.00232 * 3 2 1 35 35 H 0.96991 * 120.00571 * 180.02562 * 8 7 5 36 36 H 1.08999 * 109.47009 * 150.00205 * 13 4 3 37 37 H 1.09000 * 109.47057 * 30.00219 * 13 4 3 38 38 H 1.08999 * 109.47180 * 60.00133 * 14 13 4 39 39 H 1.09003 * 109.46742 * 300.00150 * 14 13 4 40 40 H 0.96995 * 120.00260 * 359.97438 * 15 14 13 41 41 H 1.07999 * 120.85549 * 359.97438 * 19 18 16 42 42 H 1.08003 * 120.35193 * 179.97438 * 20 19 18 43 43 H 1.08002 * 119.71246 * 180.29620 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1901 1.3327 1.1800 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0512 1.3715 8 7 5.6024 3.1239 0.6479 9 14 6.5988 1.4955 2.6567 10 1 7.0675 0.1242 2.3323 11 1 7.7563 2.4258 2.6647 12 1 5.9555 1.4950 3.9951 13 6 4.2369 1.5601 -1.2641 14 6 4.4917 0.1648 -1.8377 15 7 5.2242 0.2824 -3.1010 16 6 5.5560 -0.8254 -3.7931 17 8 5.2521 -1.9224 -3.3666 18 6 6.2899 -0.7065 -5.0710 19 6 6.6410 -1.8497 -5.7994 20 6 7.3268 -1.6839 -6.9895 21 6 7.6404 -0.4063 -7.4181 22 6 8.3878 -0.2216 -8.7135 23 9 7.4741 -0.1022 -9.7662 24 9 9.1689 0.9367 -8.6402 25 9 9.2143 -1.3281 -8.9368 26 7 7.2965 0.6528 -6.7106 27 6 6.6383 0.5469 -5.5749 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 6.4216 3.6257 0.7815 36 1 5.1894 2.0597 -1.0871 37 1 3.6475 2.1422 -1.9726 38 1 3.5392 -0.3348 -2.0147 39 1 5.0810 -0.4172 -1.1291 40 1 5.4665 1.1577 -3.4415 41 1 6.3831 -2.8354 -5.4414 42 1 7.6145 -2.5428 -7.5778 43 1 6.3702 1.4379 -5.0265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317542590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:18 Heat of formation + Delta-G solvation = -152.459698 kcal Electronic energy + Delta-G solvation = -29566.275348 eV Core-core repulsion = 24810.439063 eV Total energy + Delta-G solvation = -4755.836285 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -51.28419 -48.80739 -48.74683 -41.95629 -40.30000 -38.24562 -35.94531 -34.61061 -34.09871 -33.56040 -32.53343 -30.06519 -28.01683 -27.32741 -25.37133 -25.17296 -24.07430 -22.63145 -22.07683 -21.68861 -19.97006 -19.65980 -19.63293 -19.19318 -18.40923 -17.86259 -17.02454 -16.63956 -16.51751 -16.31306 -15.93268 -15.79697 -15.63686 -15.58637 -15.47040 -15.17767 -15.07951 -14.90629 -14.89103 -14.72847 -14.46826 -14.32217 -14.26481 -14.23187 -13.33589 -13.22012 -13.06802 -12.90612 -12.63161 -12.51344 -12.23964 -12.03796 -11.86098 -11.68819 -11.56051 -11.31512 -11.27791 -10.88899 -10.74850 -10.52661 -10.11429 -8.58183 -7.85522 -5.48127 -0.96239 -0.13521 1.25920 1.45017 1.48242 1.48771 1.54198 1.94763 2.35221 2.38888 2.50283 2.71406 3.21482 3.23462 3.32697 3.39748 3.55416 3.67662 3.73855 3.81812 4.22923 4.28825 4.34572 4.39525 4.48966 4.59249 4.69127 4.73740 4.78478 4.86915 5.01148 5.06976 5.15536 5.23756 5.26784 5.31040 5.45489 5.63900 5.66409 5.74587 6.25681 6.39037 6.47399 7.01767 7.16422 7.83384 8.35154 9.09959 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.013267 B = 0.002366 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.984812 B =11830.708498 C =12898.176211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.270 4.270 6 H 0.051 0.949 7 C -0.025 4.025 8 N -0.908 5.908 9 Si 0.948 3.052 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.277 1.277 13 C 0.142 3.858 14 C 0.118 3.882 15 N -0.702 5.702 16 C 0.556 3.444 17 O -0.570 6.570 18 C -0.157 4.157 19 C -0.012 4.012 20 C -0.114 4.114 21 C 0.043 3.957 22 C 0.528 3.472 23 F -0.170 7.170 24 F -0.171 7.171 25 F -0.163 7.163 26 N -0.464 5.464 27 C 0.144 3.856 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.254 0.746 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.412 0.588 41 H 0.172 0.828 42 H 0.189 0.811 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 -7.287 -18.817 20.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.401 4.401 6 H 0.069 0.931 7 C -0.224 4.224 8 N -0.551 5.551 9 Si 0.777 3.223 10 H -0.211 1.211 11 H -0.215 1.215 12 H -0.202 1.202 13 C 0.015 3.985 14 C -0.008 4.008 15 N -0.353 5.353 16 C 0.343 3.657 17 O -0.451 6.451 18 C -0.162 4.162 19 C -0.039 4.039 20 C -0.134 4.134 21 C -0.096 4.096 22 C 0.473 3.527 23 F -0.151 7.151 24 F -0.152 7.152 25 F -0.144 7.144 26 N -0.172 5.172 27 C -0.016 4.016 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.250 0.750 41 H 0.189 0.811 42 H 0.206 0.794 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 2.104 -7.036 -18.806 20.189 hybrid contribution 0.789 -0.466 0.941 1.314 sum 2.893 -7.502 -17.865 19.591 Atomic orbital electron populations 1.21660 0.94392 1.01756 1.01955 1.22014 0.96309 0.98750 1.00360 1.21056 0.83341 0.94548 0.99085 1.43820 1.00831 1.85053 1.01962 1.19103 1.06204 1.19958 0.94808 0.93114 1.25709 1.02059 0.94702 0.99907 1.70058 1.25939 1.15383 1.43769 0.85660 0.79192 0.77475 0.80022 1.21136 1.21532 1.20239 1.20957 0.99390 0.91881 0.86260 1.22050 0.94565 1.01269 0.82894 1.45901 1.56830 1.09219 1.23348 1.18283 0.79113 0.84321 0.84017 1.90778 1.56193 1.27538 1.70584 1.21193 1.02084 0.96587 0.96340 1.21998 0.90508 0.99957 0.91425 1.22131 0.96696 0.97742 0.96793 1.21368 1.00692 0.92028 0.95517 1.17756 0.77305 0.74252 0.83409 1.93249 1.66711 1.95706 1.59483 1.93233 1.75656 1.49959 1.96389 1.93236 1.72946 1.53004 1.95196 1.67216 1.10492 1.32690 1.06845 1.23290 0.90790 0.97216 0.90273 0.92072 0.92292 0.92730 0.93372 0.94305 0.94785 0.93140 0.93672 0.90706 0.93445 0.92661 0.94590 0.75040 0.81066 0.79413 0.79101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.13 -4.60 6.23 30.59 0.19 -4.41 16 3 C 0.15 5.69 5.72 86.38 0.49 6.18 16 4 N -0.60 -27.62 2.43 -702.00 -1.71 -29.33 16 5 C -0.27 -14.14 9.45 84.03 0.79 -13.34 16 6 H 0.05 2.71 7.92 -2.91 -0.02 2.69 16 7 C -0.03 -1.34 4.95 84.86 0.42 -0.92 16 8 N -0.91 -49.29 11.47 21.65 0.25 -49.04 16 9 Si 0.95 43.16 29.60 68.60 2.03 45.19 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 13 C 0.14 5.89 5.45 86.38 0.47 6.36 16 14 C 0.12 4.41 6.00 86.38 0.52 4.93 16 15 N -0.70 -20.47 5.51 -465.97 -2.57 -23.04 16 16 C 0.56 16.22 7.78 86.79 0.68 16.89 16 17 O -0.57 -20.85 16.42 -3.90 -0.06 -20.91 16 18 C -0.16 -3.42 5.89 -20.00 -0.12 -3.54 16 19 C -0.01 -0.22 9.72 22.73 0.22 0.00 16 20 C -0.11 -1.64 9.42 22.33 0.21 -1.43 16 21 C 0.04 0.79 6.30 42.57 0.27 1.06 16 22 C 0.53 9.34 3.43 71.24 0.24 9.59 16 23 F -0.17 -3.09 17.30 44.97 0.78 -2.31 16 24 F -0.17 -3.58 17.03 44.97 0.77 -2.81 16 25 F -0.16 -2.48 16.43 44.97 0.74 -1.74 16 26 N -0.46 -9.94 9.94 -182.81 -1.82 -11.75 16 27 C 0.14 2.83 10.71 85.02 0.91 3.74 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.67 6.64 -2.39 -0.02 1.66 16 32 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 34 H 0.05 1.80 7.83 -2.39 -0.02 1.78 16 35 H 0.25 13.40 8.31 -92.71 -0.77 12.63 16 36 H 0.08 3.54 5.52 -2.39 -0.01 3.52 16 37 H 0.05 1.78 7.86 -2.39 -0.02 1.76 16 38 H 0.06 2.08 6.64 -2.39 -0.02 2.07 16 39 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.41 9.57 6.54 -92.71 -0.61 8.97 16 41 H 0.17 2.70 7.74 -2.91 -0.02 2.68 16 42 H 0.19 1.42 7.59 -2.91 -0.02 1.40 16 43 H 0.19 2.91 6.42 -2.91 -0.02 2.89 16 Total: -1.00 -64.20 376.21 4.88 -59.32 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.46 Total: 14.26 kcal Atomic # 6 Polarization: 16.15 SS G_CDS: 6.01 Total: 22.16 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -5.84 Total: -113.17 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.06 Total: -20.91 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 2.28 Total: -6.86 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -64.20 4.88 -59.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317542590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.135 kcal (2) G-P(sol) polarization free energy of solvation -64.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds