Wall clock time and date at job start Wed Apr 1 2020 03:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34769 * 119.99943 * 180.02562 * 7 6 4 9 9 O 1.21516 * 120.00120 * 359.97438 * 8 7 6 10 10 C 1.48149 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.39843 * 120.92091 * 359.97438 * 10 8 7 12 12 C 1.38129 * 118.99919 * 179.97438 * 11 10 8 13 13 N 1.31828 * 120.90261 * 0.02562 * 12 11 10 14 14 C 1.31802 * 122.04464 * 359.97438 * 13 12 11 15 15 C 1.38168 * 120.89746 * 359.74465 * 14 13 12 16 16 C 1.50695 * 120.50102 * 180.28678 * 15 14 13 17 17 F 1.39900 * 109.47152 * 0.22670 * 16 15 14 18 18 F 1.39902 * 109.47480 * 120.22557 * 16 15 14 19 19 F 1.39905 * 109.46928 * 240.22456 * 16 15 14 20 20 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 21 21 C 1.36936 * 120.00314 * 84.99627 * 20 4 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 4 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 30 30 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 31 31 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 33 33 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 35 35 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 36 36 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 37 37 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 38 38 H 0.97003 * 120.00245 * 0.02562 * 7 6 4 39 39 H 1.07990 * 120.49835 * 359.95873 * 11 10 8 40 40 H 1.08002 * 119.54858 * 179.97438 * 12 11 10 41 41 H 1.07999 * 119.54602 * 180.02562 * 14 13 12 42 42 H 0.97000 * 120.00040 * 264.99759 * 20 4 2 43 43 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0432 -4.7526 1.8255 10 6 2.3970 -4.9175 3.7259 11 6 3.2772 -4.2832 4.6082 12 6 3.8047 -5.0041 5.6617 13 7 3.4891 -6.2715 5.8401 14 6 2.6639 -6.9071 5.0325 15 6 2.0859 -6.2608 3.9567 16 6 1.1386 -6.9944 3.0426 17 9 0.9934 -8.3141 3.4834 18 9 -0.1077 -6.3588 3.0552 19 9 1.6506 -6.9912 1.7406 20 7 3.5049 -0.7208 1.2496 21 6 4.1892 0.3542 1.7510 22 1 3.6489 1.2015 2.1467 23 6 5.5773 0.3548 1.7508 24 7 6.2349 1.3904 2.2279 25 14 6.5120 -1.1104 1.0659 26 1 6.7659 -2.0882 2.1543 27 1 5.7067 -1.7561 -0.0017 28 1 7.8062 -0.6517 0.5007 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 0.4436 -2.1650 1.3388 37 1 1.8183 -2.6511 0.3179 38 1 2.7226 -2.4349 2.9849 39 1 3.5408 -3.2454 4.4678 40 1 4.4857 -4.5231 6.3482 41 1 2.4329 -7.9459 5.2168 42 1 3.9903 -1.4819 0.8946 43 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319954494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:44 Heat of formation + Delta-G solvation = -136.554246 kcal Electronic energy + Delta-G solvation = -31441.347528 eV Core-core repulsion = 26686.200955 eV Total energy + Delta-G solvation = -4755.146573 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.08276 -47.66582 -47.41284 -41.01161 -39.33905 -37.50727 -34.39901 -33.42077 -33.24122 -32.28634 -30.92278 -28.55947 -26.65233 -26.29398 -25.14950 -23.67801 -22.74702 -21.85506 -20.83305 -19.70825 -19.01388 -18.42875 -18.37482 -17.98615 -17.34111 -16.86107 -15.72789 -15.66451 -15.59798 -15.09949 -15.03563 -14.36937 -14.29764 -14.20246 -14.15506 -14.03689 -13.91383 -13.68159 -13.60104 -13.52450 -13.13848 -13.11273 -12.98937 -12.57980 -12.26059 -12.01926 -11.71790 -11.37685 -11.19782 -10.98826 -10.80233 -10.49157 -10.44065 -10.31524 -10.25184 -10.11437 -9.85941 -9.83524 -9.59855 -9.08324 -8.98382 -7.46134 -5.92427 -3.29461 0.09095 0.44376 2.51484 2.64073 2.94688 3.22815 3.29052 3.31201 3.35222 3.58806 3.88810 3.97309 4.20746 4.32778 4.42754 4.43730 4.71150 4.76723 5.01814 5.08989 5.17808 5.26988 5.31420 5.41421 5.49932 5.57826 5.63962 5.80195 5.94817 5.97015 6.08762 6.19212 6.29220 6.34683 6.47678 6.48060 6.67700 6.91454 7.25662 7.31168 7.43019 7.82849 8.03815 8.25564 9.02905 9.75094 9.93944 11.24874 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.003885 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.120618 B = 7204.679060 C = 8762.551326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.174 3.826 5 H 0.065 0.935 6 C 0.109 3.891 7 N -0.700 5.700 8 C 0.541 3.459 9 O -0.518 6.518 10 C -0.034 4.034 11 C -0.141 4.141 12 C 0.131 3.869 13 N -0.468 5.468 14 C 0.145 3.855 15 C -0.195 4.195 16 C 0.524 3.476 17 F -0.184 7.184 18 F -0.163 7.163 19 F -0.162 7.162 20 N -0.748 5.748 21 C -0.245 4.245 22 H 0.096 0.904 23 C 0.011 3.989 24 N -0.928 5.928 25 Si 0.876 3.124 26 H -0.285 1.285 27 H -0.277 1.277 28 H -0.291 1.291 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.410 0.590 39 H 0.158 0.842 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 -13.162 4.609 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.064 3.936 5 H 0.082 0.918 6 C -0.015 4.015 7 N -0.352 5.352 8 C 0.325 3.675 9 O -0.395 6.395 10 C -0.045 4.045 11 C -0.161 4.161 12 C -0.025 4.025 13 N -0.176 5.176 14 C -0.013 4.013 15 C -0.199 4.199 16 C 0.469 3.531 17 F -0.166 7.166 18 F -0.144 7.144 19 F -0.143 7.143 20 N -0.391 5.391 21 C -0.374 4.374 22 H 0.113 0.887 23 C -0.186 4.186 24 N -0.575 5.575 25 Si 0.706 3.294 26 H -0.211 1.211 27 H -0.204 1.204 28 H -0.217 1.217 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.248 0.752 39 H 0.176 0.824 40 H 0.193 0.807 41 H 0.193 0.807 42 H 0.195 0.805 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.510 -13.757 4.839 17.410 hybrid contribution 0.705 -0.309 -1.157 1.389 sum -8.805 -14.066 3.682 16.998 Atomic orbital electron populations 1.21946 0.96546 1.01005 1.01280 1.21690 0.93845 0.98088 0.99363 1.21824 1.04405 0.94148 0.99305 1.20553 0.85096 0.90948 0.96978 0.91752 1.21934 0.98087 0.93158 0.88273 1.45883 1.48101 1.10094 1.31091 1.18053 0.82214 0.82678 0.84508 1.90862 1.35153 1.67367 1.46137 1.20332 0.95795 0.92779 0.95601 1.22606 0.96074 1.02661 0.94761 1.23155 0.95187 0.89413 0.94785 1.67798 1.12310 1.10153 1.27367 1.22765 0.90074 1.00514 0.87903 1.21218 1.03000 0.95450 1.00269 1.17672 0.79943 0.76072 0.79450 1.93149 1.96060 1.37918 1.89424 1.93242 1.43207 1.81547 1.96371 1.93254 1.86667 1.96128 1.38241 1.42876 1.00322 1.20907 1.74956 1.19039 0.89251 0.96408 1.32718 0.88663 1.24646 0.96186 0.96994 1.00760 1.69685 1.07185 1.29487 1.51121 0.86705 0.80173 0.83354 0.79163 1.21132 1.20352 1.21709 0.92958 0.93325 0.93058 0.91949 0.89284 0.94893 0.93734 0.90526 0.91323 0.75196 0.82404 0.80677 0.80739 0.80532 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.84 37.16 0.33 -1.58 16 2 C -0.11 -1.67 2.69 -90.62 -0.24 -1.91 16 3 C -0.14 -2.39 8.26 37.16 0.31 -2.08 16 4 C 0.17 2.82 2.18 -67.93 -0.15 2.67 16 5 H 0.06 1.07 8.08 -51.92 -0.42 0.65 16 6 C 0.11 1.60 4.73 -4.04 -0.02 1.58 16 7 N -0.70 -9.93 5.35 -61.15 -0.33 -10.26 16 8 C 0.54 8.06 7.63 -12.19 -0.09 7.96 16 9 O -0.52 -8.95 11.59 5.35 0.06 -8.89 16 10 C -0.03 -0.43 5.88 -104.64 -0.62 -1.05 16 11 C -0.14 -1.48 9.62 -39.02 -0.38 -1.86 16 12 C 0.13 1.25 11.17 -17.59 -0.20 1.05 16 13 N -0.47 -5.01 10.34 -13.30 -0.14 -5.15 16 14 C 0.14 1.51 10.59 -17.59 -0.19 1.32 16 15 C -0.19 -2.40 5.41 -104.07 -0.56 -2.96 16 16 C 0.52 7.04 2.78 36.00 0.10 7.14 16 17 F -0.18 -2.13 16.01 2.25 0.04 -2.09 16 18 F -0.16 -2.43 15.14 2.25 0.03 -2.39 16 19 F -0.16 -2.50 15.12 2.25 0.03 -2.47 16 20 N -0.75 -14.81 4.24 -53.43 -0.23 -15.04 16 21 C -0.24 -5.87 8.05 -15.06 -0.12 -5.99 16 22 H 0.10 2.48 7.63 -52.49 -0.40 2.08 16 23 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 24 N -0.93 -26.61 13.97 55.49 0.78 -25.83 16 25 Si 0.88 20.23 27.74 -169.99 -4.72 15.51 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.19 6.51 56.52 0.37 -5.82 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.61 6.54 -51.93 -0.34 0.27 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.84 6.01 -51.93 -0.31 1.53 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.08 1.05 6.71 -51.93 -0.35 0.70 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.41 5.57 6.28 -40.82 -0.26 5.32 16 39 H 0.16 1.48 6.54 -52.49 -0.34 1.14 16 40 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.18 1.39 7.17 -52.49 -0.38 1.01 16 42 H 0.36 7.37 5.66 -40.82 -0.23 7.14 16 43 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 359.39 15.07 5.42 5.42 Total: -1.00 -29.64 359.39 -6.13 -35.76 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -5.15 Total: 10.97 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -1.92 Total: 4.46 kcal Atomic # 7 Polarization: -56.37 SS G_CDS: 0.08 Total: -56.29 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.06 Total: -8.89 kcal Atomic # 9 Polarization: -7.05 SS G_CDS: 0.10 Total: -6.95 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -4.72 Total: 15.51 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.64 -6.13 -35.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319954494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.790 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds