Wall clock time and date at job start Wed Apr 1 2020 03:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34769 * 119.99943 * 180.02562 * 7 6 4 9 9 O 1.21516 * 120.00120 * 359.97438 * 8 7 6 10 10 C 1.48149 * 120.00134 * 179.97438 * 8 7 6 11 11 C 1.39843 * 120.92091 * 359.97438 * 10 8 7 12 12 C 1.38129 * 118.99919 * 179.97438 * 11 10 8 13 13 N 1.31828 * 120.90261 * 0.02562 * 12 11 10 14 14 C 1.31802 * 122.04464 * 359.97438 * 13 12 11 15 15 C 1.38168 * 120.89746 * 359.74465 * 14 13 12 16 16 C 1.50695 * 120.50102 * 180.28678 * 15 14 13 17 17 F 1.39900 * 109.47152 * 0.22670 * 16 15 14 18 18 F 1.39902 * 109.47480 * 120.22557 * 16 15 14 19 19 F 1.39905 * 109.46928 * 240.22456 * 16 15 14 20 20 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 21 21 C 1.36936 * 120.00314 * 84.99627 * 20 4 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 4 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 30 30 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 31 31 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 33 33 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 35 35 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 36 36 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 37 37 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 38 38 H 0.97003 * 120.00245 * 0.02562 * 7 6 4 39 39 H 1.07990 * 120.49835 * 359.95873 * 11 10 8 40 40 H 1.08002 * 119.54858 * 179.97438 * 12 11 10 41 41 H 1.07999 * 119.54602 * 180.02562 * 14 13 12 42 42 H 0.97000 * 120.00040 * 264.99759 * 20 4 2 43 43 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0432 -4.7526 1.8255 10 6 2.3970 -4.9175 3.7259 11 6 3.2772 -4.2832 4.6082 12 6 3.8047 -5.0041 5.6617 13 7 3.4891 -6.2715 5.8401 14 6 2.6639 -6.9071 5.0325 15 6 2.0859 -6.2608 3.9567 16 6 1.1386 -6.9944 3.0426 17 9 0.9934 -8.3141 3.4834 18 9 -0.1077 -6.3588 3.0552 19 9 1.6506 -6.9912 1.7406 20 7 3.5049 -0.7208 1.2496 21 6 4.1892 0.3542 1.7510 22 1 3.6489 1.2015 2.1467 23 6 5.5773 0.3548 1.7508 24 7 6.2349 1.3904 2.2279 25 14 6.5120 -1.1104 1.0659 26 1 6.7659 -2.0882 2.1543 27 1 5.7067 -1.7561 -0.0017 28 1 7.8062 -0.6517 0.5007 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 0.4436 -2.1650 1.3388 37 1 1.8183 -2.6511 0.3179 38 1 2.7226 -2.4349 2.9849 39 1 3.5408 -3.2454 4.4678 40 1 4.4857 -4.5231 6.3482 41 1 2.4329 -7.9459 5.2168 42 1 3.9903 -1.4819 0.8946 43 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319954494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:43 Heat of formation + Delta-G solvation = -155.535478 kcal Electronic energy + Delta-G solvation = -31442.170616 eV Core-core repulsion = 26686.200955 eV Total energy + Delta-G solvation = -4755.969661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.12055 -48.67795 -48.51849 -41.94016 -40.42683 -38.87710 -35.61672 -34.95583 -34.32522 -33.19273 -32.63931 -29.89681 -27.70818 -27.48193 -26.20502 -25.12400 -23.82574 -23.17796 -21.97608 -21.03328 -20.14871 -19.56267 -19.43791 -19.27389 -18.62357 -17.84566 -17.10842 -16.70838 -16.61317 -16.43851 -15.90294 -15.84367 -15.43655 -15.31838 -15.22092 -15.10404 -14.99542 -14.94168 -14.73038 -14.69862 -14.61632 -14.30337 -14.22314 -13.96853 -13.50492 -12.96069 -12.93986 -12.91950 -12.85501 -12.48913 -12.33223 -11.95689 -11.78594 -11.58502 -11.46401 -11.36694 -11.33590 -10.89406 -10.79268 -10.64139 -10.18971 -9.27624 -7.93985 -5.26584 -0.82196 -0.36753 1.38807 1.43543 1.48613 1.53222 1.61374 1.87025 2.41844 2.52145 2.61873 2.94255 3.21661 3.27123 3.36137 3.38728 3.44742 3.58242 3.78755 3.82048 3.97664 4.21484 4.27438 4.39471 4.41163 4.42425 4.60196 4.63143 4.70852 4.89879 4.94979 5.02492 5.14412 5.20638 5.23120 5.26555 5.41982 5.61578 5.76086 5.89000 6.27633 6.29509 6.51837 6.90880 7.13882 7.87801 8.06426 9.26797 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011510 B = 0.003885 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.120618 B = 7204.679060 C = 8762.551326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.176 3.824 5 H 0.064 0.936 6 C 0.118 3.882 7 N -0.698 5.698 8 C 0.540 3.460 9 O -0.546 6.546 10 C -0.051 4.051 11 C -0.137 4.137 12 C 0.139 3.861 13 N -0.476 5.476 14 C 0.151 3.849 15 C -0.206 4.206 16 C 0.522 3.478 17 F -0.174 7.174 18 F -0.174 7.174 19 F -0.177 7.177 20 N -0.746 5.746 21 C -0.203 4.203 22 H 0.071 0.929 23 C -0.052 4.052 24 N -0.980 5.980 25 Si 0.932 3.068 26 H -0.273 1.273 27 H -0.265 1.265 28 H -0.309 1.309 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.050 0.950 35 H 0.040 0.960 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.414 0.586 39 H 0.169 0.831 40 H 0.209 0.791 41 H 0.198 0.802 42 H 0.362 0.638 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 -14.641 5.121 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.067 3.933 5 H 0.082 0.918 6 C -0.006 4.006 7 N -0.349 5.349 8 C 0.326 3.674 9 O -0.425 6.425 10 C -0.062 4.062 11 C -0.158 4.158 12 C -0.017 4.017 13 N -0.184 5.184 14 C -0.005 4.005 15 C -0.210 4.210 16 C 0.467 3.533 17 F -0.155 7.155 18 F -0.156 7.156 19 F -0.158 7.158 20 N -0.389 5.389 21 C -0.334 4.334 22 H 0.088 0.912 23 C -0.244 4.244 24 N -0.631 5.631 25 Si 0.762 3.238 26 H -0.198 1.198 27 H -0.190 1.190 28 H -0.237 1.237 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.252 0.748 39 H 0.187 0.813 40 H 0.225 0.775 41 H 0.214 0.786 42 H 0.195 0.805 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.410 -15.274 5.345 19.241 hybrid contribution 0.858 0.187 -1.295 1.565 sum -9.552 -15.087 4.050 18.310 Atomic orbital electron populations 1.21863 0.93850 1.02094 1.02188 1.21603 0.96052 0.96509 0.98481 1.21723 1.01627 0.95749 1.00060 1.20681 0.82794 0.92383 0.97416 0.91807 1.21803 0.98804 0.91618 0.88328 1.45843 1.48073 1.10093 1.30931 1.18350 0.81734 0.82594 0.84738 1.90846 1.36441 1.67885 1.47301 1.20263 0.97075 0.93121 0.95729 1.22767 0.95364 1.03172 0.94475 1.23699 0.94581 0.88954 0.94474 1.67907 1.12395 1.10731 1.27362 1.23103 0.89184 1.01341 0.86878 1.21204 1.03550 0.95399 1.00886 1.17823 0.79749 0.76581 0.79138 1.93161 1.96013 1.37152 1.89182 1.93210 1.44075 1.81882 1.96397 1.93216 1.86829 1.96247 1.39529 1.42849 1.01920 1.19633 1.74530 1.18923 0.88942 0.96036 1.29517 0.91155 1.25206 0.97291 0.99312 1.02607 1.69841 1.06902 1.31972 1.54381 0.85763 0.78149 0.80824 0.79039 1.19849 1.19048 1.23689 0.92388 0.92162 0.91879 0.92255 0.93306 0.93135 0.94049 0.89102 0.91883 0.74815 0.81346 0.77489 0.78570 0.80472 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.84 71.98 0.64 -2.59 16 2 C -0.10 -3.06 2.69 -10.79 -0.03 -3.09 16 3 C -0.13 -4.49 8.26 71.98 0.59 -3.90 16 4 C 0.18 5.41 2.18 44.99 0.10 5.51 16 5 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 6 C 0.12 3.23 4.73 86.38 0.41 3.64 16 7 N -0.70 -18.68 5.35 -465.68 -2.49 -21.16 16 8 C 0.54 15.43 7.63 86.88 0.66 16.09 16 9 O -0.55 -18.44 11.59 -3.77 -0.04 -18.49 16 10 C -0.05 -1.22 5.88 -19.88 -0.12 -1.34 16 11 C -0.14 -2.58 9.62 22.63 0.22 -2.36 16 12 C 0.14 2.23 11.17 84.67 0.95 3.17 16 13 N -0.48 -8.85 10.34 -196.00 -2.03 -10.88 16 14 C 0.15 2.82 10.59 84.68 0.90 3.72 16 15 C -0.21 -4.77 5.41 -19.50 -0.11 -4.87 16 16 C 0.52 13.60 2.78 71.23 0.20 13.79 16 17 F -0.17 -3.79 16.01 44.97 0.72 -3.07 16 18 F -0.17 -5.13 15.14 44.97 0.68 -4.45 16 19 F -0.18 -5.40 15.12 44.97 0.68 -4.72 16 20 N -0.75 -28.79 4.24 -322.94 -1.37 -30.16 16 21 C -0.20 -9.78 8.05 84.03 0.68 -9.10 16 22 H 0.07 3.73 7.63 -2.91 -0.02 3.71 16 23 C -0.05 -2.76 5.50 84.86 0.47 -2.30 16 24 N -0.98 -57.66 13.97 21.65 0.30 -57.36 16 25 Si 0.93 41.74 27.74 68.60 1.90 43.64 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 H -0.27 -11.13 6.51 99.48 0.65 -10.49 16 28 H -0.31 -14.74 7.11 99.48 0.71 -14.03 16 29 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.30 6.54 -2.39 -0.02 1.29 16 32 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.05 2.02 6.01 -2.39 -0.01 2.01 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.09 2.27 6.71 -2.39 -0.02 2.26 16 37 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.41 10.50 6.28 -92.71 -0.58 9.92 16 39 H 0.17 2.74 6.54 -2.92 -0.02 2.72 16 40 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 41 H 0.20 2.62 7.17 -2.91 -0.02 2.60 16 42 H 0.36 14.14 5.66 -92.71 -0.52 13.62 16 43 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -64.80 359.39 3.82 -60.98 By element: Atomic # 1 Polarization: 29.37 SS G_CDS: -0.08 Total: 29.28 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 5.55 Total: 16.39 kcal Atomic # 7 Polarization: -113.98 SS G_CDS: -5.58 Total: -119.56 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.04 Total: -18.49 kcal Atomic # 9 Polarization: -14.32 SS G_CDS: 2.08 Total: -12.24 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.90 Total: 43.64 kcal Total: -64.80 3.82 -60.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319954494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.560 kcal (2) G-P(sol) polarization free energy of solvation -64.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds