Wall clock time and date at job start Wed Apr 1 2020 03:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46846 * 2 1 4 4 C 1.52999 * 109.47179 * 120.00024 * 2 1 3 5 5 H 1.08997 * 109.46828 * 299.99992 * 4 2 1 6 6 C 1.53006 * 109.46811 * 180.02562 * 4 2 1 7 7 N 1.46500 * 109.46998 * 184.99974 * 6 4 2 8 8 C 1.34769 * 120.00237 * 180.02562 * 7 6 4 9 9 O 1.21517 * 119.99865 * 359.97438 * 8 7 6 10 10 C 1.48152 * 120.00169 * 179.97438 * 8 7 6 11 11 C 1.39836 * 120.92273 * 359.97438 * 10 8 7 12 12 C 1.38129 * 119.00083 * 179.97438 * 11 10 8 13 13 N 1.31828 * 120.90133 * 359.97438 * 12 11 10 14 14 C 1.31796 * 122.04492 * 359.97438 * 13 12 11 15 15 C 1.38180 * 120.89780 * 359.74144 * 14 13 12 16 16 C 1.50698 * 120.49914 * 180.28427 * 15 14 13 17 17 F 1.39896 * 109.47101 * 0.22724 * 16 15 14 18 18 F 1.39903 * 109.47010 * 120.22892 * 16 15 14 19 19 F 1.39903 * 109.47160 * 240.22550 * 16 15 14 20 20 N 1.46493 * 109.47168 * 60.00108 * 4 2 1 21 21 C 1.36940 * 120.00317 * 274.99962 * 20 4 2 22 22 H 1.07999 * 119.99727 * 359.97438 * 21 20 4 23 23 C 1.38806 * 120.00128 * 180.02562 * 21 20 4 24 24 N 1.31615 * 120.00100 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99731 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47385 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47390 * 119.99925 * 25 23 21 28 28 H 1.48502 * 109.46804 * 239.99522 * 25 23 21 29 29 H 1.09001 * 109.47165 * 299.99729 * 1 2 3 30 30 H 1.08998 * 109.47611 * 60.00231 * 1 2 3 31 31 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47165 * 240.00270 * 2 1 3 33 33 H 1.09002 * 109.47069 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47196 * 299.99650 * 3 2 1 35 35 H 1.08994 * 109.47635 * 60.00325 * 3 2 1 36 36 H 1.08993 * 109.46955 * 305.00200 * 6 4 2 37 37 H 1.09000 * 109.47050 * 65.00029 * 6 4 2 38 38 H 0.97010 * 119.99909 * 359.97438 * 7 6 4 39 39 H 1.08001 * 120.49643 * 359.95999 * 11 10 8 40 40 H 1.08001 * 119.54441 * 179.97438 * 12 11 10 41 41 H 1.07996 * 119.55209 * 179.97438 * 14 13 12 42 42 H 0.97003 * 120.00120 * 95.00139 * 20 4 2 43 43 H 0.97006 * 119.99764 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5129 2.3809 8 6 5.3835 -1.6532 2.5831 9 8 6.1731 -1.1231 1.8268 10 6 5.8774 -2.4539 3.7276 11 6 4.9860 -3.0719 4.6102 12 6 5.4900 -3.8095 5.6637 13 7 6.7901 -3.9348 5.8417 14 6 7.6643 -3.3699 5.0332 15 6 7.2476 -2.6191 3.9505 16 6 8.2549 -1.9825 3.0281 17 9 9.5476 -2.2933 3.4634 18 9 8.0706 -2.4689 1.7293 19 9 8.0816 -0.5943 3.0351 20 7 1.5517 -2.1024 1.2492 21 6 0.3101 -2.3898 1.7504 22 1 -0.3089 -1.5982 2.1461 23 6 -0.1523 -3.6986 1.7509 24 7 0.6024 -4.6633 1.2692 25 14 -1.8462 -4.0903 2.4339 26 1 -2.4893 -2.8395 2.9105 27 1 -2.6805 -4.7014 1.3682 28 1 -1.7152 -5.0418 3.5666 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9336 -1.1546 0.3181 37 1 3.9329 0.3032 1.3392 38 1 3.4281 -1.9358 2.9849 39 1 3.9196 -2.9736 4.4703 40 1 4.8094 -4.2902 6.3509 41 1 8.7207 -3.4987 5.2171 42 1 2.1079 -2.8135 0.8942 43 1 0.2790 -5.5779 1.2692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319954495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:47 Heat of formation + Delta-G solvation = -140.918231 kcal Electronic energy + Delta-G solvation = -31324.142284 eV Core-core repulsion = 26568.806474 eV Total energy + Delta-G solvation = -4755.335809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.99590 -47.58084 -47.32128 -40.89863 -39.20132 -37.34912 -34.26687 -33.31859 -33.21350 -32.18322 -30.47200 -28.32902 -26.57877 -26.13278 -25.03412 -23.79303 -22.74786 -21.91909 -20.70573 -19.55127 -18.83847 -18.30861 -18.28367 -17.77965 -17.12589 -16.75362 -15.58461 -15.55936 -15.45576 -15.00261 -14.92280 -14.30115 -14.21034 -14.11461 -14.03409 -13.90282 -13.82562 -13.57349 -13.51712 -13.42277 -13.32714 -13.03645 -12.88014 -12.30677 -12.10583 -11.91559 -11.69080 -11.17421 -11.05250 -10.91461 -10.75490 -10.41448 -10.33392 -10.33104 -10.16153 -10.04885 -9.75520 -9.73224 -9.63984 -9.03367 -8.84536 -7.14352 -5.92137 -3.22220 0.19896 0.54876 2.60922 2.76220 3.08835 3.31679 3.38964 3.41046 3.42815 3.67838 3.98718 4.06381 4.31671 4.42898 4.46693 4.51909 4.81492 4.87310 5.19899 5.25795 5.28911 5.38661 5.43296 5.52145 5.55822 5.66438 5.79003 5.90434 6.06865 6.09169 6.16158 6.29525 6.34512 6.43747 6.53477 6.54043 6.74985 6.98529 7.22315 7.40424 7.57841 7.58664 8.18531 8.24886 9.37126 9.90639 10.26650 11.29364 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.003596 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.963954 B = 7784.600494 C = 9554.732545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.109 4.109 3 C -0.150 4.150 4 C 0.169 3.831 5 H 0.055 0.945 6 C 0.113 3.887 7 N -0.694 5.694 8 C 0.541 3.459 9 O -0.522 6.522 10 C -0.032 4.032 11 C -0.137 4.137 12 C 0.130 3.870 13 N -0.469 5.469 14 C 0.143 3.857 15 C -0.195 4.195 16 C 0.524 3.476 17 F -0.185 7.185 18 F -0.161 7.161 19 F -0.163 7.163 20 N -0.722 5.722 21 C -0.239 4.239 22 H 0.074 0.926 23 C -0.009 4.009 24 N -0.928 5.928 25 Si 0.901 3.099 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.411 0.589 39 H 0.159 0.841 40 H 0.175 0.825 41 H 0.175 0.825 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.209 5.753 6.643 14.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.208 4.208 4 C 0.059 3.941 5 H 0.073 0.927 6 C -0.011 4.011 7 N -0.346 5.346 8 C 0.326 3.674 9 O -0.399 6.399 10 C -0.043 4.043 11 C -0.158 4.158 12 C -0.027 4.027 13 N -0.178 5.178 14 C -0.014 4.014 15 C -0.200 4.200 16 C 0.469 3.531 17 F -0.166 7.166 18 F -0.142 7.142 19 F -0.144 7.144 20 N -0.364 5.364 21 C -0.370 4.370 22 H 0.092 0.908 23 C -0.205 4.205 24 N -0.576 5.576 25 Si 0.733 3.267 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.249 0.751 39 H 0.176 0.824 40 H 0.192 0.808 41 H 0.192 0.808 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.881 5.657 6.844 14.832 hybrid contribution -1.389 -0.211 -0.454 1.476 sum 10.492 5.446 6.390 13.438 Atomic orbital electron populations 1.21818 0.94845 1.03923 0.99071 1.21720 0.96987 0.94432 0.99929 1.21948 1.00505 0.97291 1.01021 1.20565 0.89000 0.88304 0.96257 0.92710 1.21871 0.95941 0.94899 0.88419 1.45838 1.05774 1.52041 1.30953 1.18035 0.83552 0.81376 0.84487 1.90854 1.54990 1.47786 1.46283 1.20337 0.92385 0.95998 0.95559 1.22593 1.01859 0.96694 0.94614 1.23124 0.91789 0.92874 0.94871 1.67780 1.03398 1.18970 1.27618 1.22739 1.00802 0.89908 0.87955 1.21214 0.93744 1.04900 1.00107 1.17677 0.78670 0.77198 0.79593 1.93143 1.40943 1.92941 1.89608 1.93256 1.94903 1.87568 1.38506 1.93239 1.95073 1.29706 1.96394 1.42496 1.18193 1.01809 1.73913 1.19238 0.92843 0.92389 1.32547 0.90789 1.24729 0.98260 0.95879 1.01674 1.69669 1.36799 0.99924 1.51173 0.86213 0.84283 0.77964 0.78279 1.20517 1.21882 1.21895 0.94040 0.94922 0.89490 0.91813 0.93019 0.93487 0.93157 0.91320 0.91010 0.75139 0.82394 0.80808 0.80830 0.78089 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.26 37.16 0.31 -2.06 16 2 C -0.11 -1.74 2.69 -90.62 -0.24 -1.99 16 3 C -0.15 -1.99 8.84 37.16 0.33 -1.66 16 4 C 0.17 2.87 2.18 -67.93 -0.15 2.72 16 5 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 6 C 0.11 1.76 4.73 -4.04 -0.02 1.74 16 7 N -0.69 -10.58 5.35 -61.15 -0.33 -10.91 16 8 C 0.54 8.59 7.63 -12.19 -0.09 8.49 16 9 O -0.52 -9.53 11.59 5.35 0.06 -9.47 16 10 C -0.03 -0.43 5.88 -104.65 -0.62 -1.05 16 11 C -0.14 -1.55 9.62 -39.02 -0.38 -1.93 16 12 C 0.13 1.32 11.17 -17.59 -0.20 1.12 16 13 N -0.47 -5.30 10.34 -13.30 -0.14 -5.44 16 14 C 0.14 1.59 10.59 -17.59 -0.19 1.40 16 15 C -0.20 -2.55 5.41 -104.06 -0.56 -3.11 16 16 C 0.52 7.41 2.78 36.00 0.10 7.51 16 17 F -0.18 -2.25 16.01 2.25 0.04 -2.21 16 18 F -0.16 -2.63 15.15 2.25 0.03 -2.60 16 19 F -0.16 -2.54 15.11 2.25 0.03 -2.51 16 20 N -0.72 -15.22 4.44 -53.43 -0.24 -15.46 16 21 C -0.24 -5.66 7.57 -15.06 -0.11 -5.77 16 22 H 0.07 1.73 7.40 -52.49 -0.39 1.34 16 23 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 24 N -0.93 -25.38 13.06 55.49 0.72 -24.66 16 25 Si 0.90 20.45 29.55 -169.99 -5.02 15.42 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.77 6.01 -51.93 -0.31 1.45 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.06 6.71 -51.93 -0.35 0.71 16 38 H 0.41 6.08 6.28 -40.82 -0.26 5.83 16 39 H 0.16 1.63 6.54 -52.49 -0.34 1.28 16 40 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 41 H 0.17 1.49 7.17 -52.49 -0.38 1.11 16 42 H 0.39 9.00 7.80 -40.82 -0.32 8.68 16 43 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -28.57 362.52 -6.48 -35.06 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -5.20 Total: 12.19 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -1.91 Total: 5.11 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.02 Total: -56.46 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.06 Total: -9.47 kcal Atomic # 9 Polarization: -7.42 SS G_CDS: 0.10 Total: -7.31 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.57 -6.48 -35.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319954495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.862 kcal (2) G-P(sol) polarization free energy of solvation -28.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds