Wall clock time and date at job start Wed Apr 1 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46846 * 2 1 4 4 C 1.52999 * 109.47179 * 120.00024 * 2 1 3 5 5 H 1.08997 * 109.46828 * 299.99992 * 4 2 1 6 6 C 1.53006 * 109.46811 * 180.02562 * 4 2 1 7 7 N 1.46500 * 109.46998 * 184.99974 * 6 4 2 8 8 C 1.34769 * 120.00237 * 180.02562 * 7 6 4 9 9 O 1.21517 * 119.99865 * 359.97438 * 8 7 6 10 10 C 1.48152 * 120.00169 * 179.97438 * 8 7 6 11 11 C 1.39836 * 120.92273 * 359.97438 * 10 8 7 12 12 C 1.38129 * 119.00083 * 179.97438 * 11 10 8 13 13 N 1.31828 * 120.90133 * 359.97438 * 12 11 10 14 14 C 1.31796 * 122.04492 * 359.97438 * 13 12 11 15 15 C 1.38180 * 120.89780 * 359.74144 * 14 13 12 16 16 C 1.50698 * 120.49914 * 180.28427 * 15 14 13 17 17 F 1.39896 * 109.47101 * 0.22724 * 16 15 14 18 18 F 1.39903 * 109.47010 * 120.22892 * 16 15 14 19 19 F 1.39903 * 109.47160 * 240.22550 * 16 15 14 20 20 N 1.46493 * 109.47168 * 60.00108 * 4 2 1 21 21 C 1.36940 * 120.00317 * 274.99962 * 20 4 2 22 22 H 1.07999 * 119.99727 * 359.97438 * 21 20 4 23 23 C 1.38806 * 120.00128 * 180.02562 * 21 20 4 24 24 N 1.31615 * 120.00100 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99731 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47385 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47390 * 119.99925 * 25 23 21 28 28 H 1.48502 * 109.46804 * 239.99522 * 25 23 21 29 29 H 1.09001 * 109.47165 * 299.99729 * 1 2 3 30 30 H 1.08998 * 109.47611 * 60.00231 * 1 2 3 31 31 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47165 * 240.00270 * 2 1 3 33 33 H 1.09002 * 109.47069 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.47196 * 299.99650 * 3 2 1 35 35 H 1.08994 * 109.47635 * 60.00325 * 3 2 1 36 36 H 1.08993 * 109.46955 * 305.00200 * 6 4 2 37 37 H 1.09000 * 109.47050 * 65.00029 * 6 4 2 38 38 H 0.97010 * 119.99909 * 359.97438 * 7 6 4 39 39 H 1.08001 * 120.49643 * 359.95999 * 11 10 8 40 40 H 1.08001 * 119.54441 * 179.97438 * 12 11 10 41 41 H 1.07996 * 119.55209 * 179.97438 * 14 13 12 42 42 H 0.97003 * 120.00120 * 95.00139 * 20 4 2 43 43 H 0.97006 * 119.99764 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 3.5700 -0.7206 1.2495 7 7 4.0585 -1.5129 2.3809 8 6 5.3835 -1.6532 2.5831 9 8 6.1731 -1.1231 1.8268 10 6 5.8774 -2.4539 3.7276 11 6 4.9860 -3.0719 4.6102 12 6 5.4900 -3.8095 5.6637 13 7 6.7901 -3.9348 5.8417 14 6 7.6643 -3.3699 5.0332 15 6 7.2476 -2.6191 3.9505 16 6 8.2549 -1.9825 3.0281 17 9 9.5476 -2.2933 3.4634 18 9 8.0706 -2.4689 1.7293 19 9 8.0816 -0.5943 3.0351 20 7 1.5517 -2.1024 1.2492 21 6 0.3101 -2.3898 1.7504 22 1 -0.3089 -1.5982 2.1461 23 6 -0.1523 -3.6986 1.7509 24 7 0.6024 -4.6633 1.2692 25 14 -1.8462 -4.0903 2.4339 26 1 -2.4893 -2.8395 2.9105 27 1 -2.6805 -4.7014 1.3682 28 1 -1.7152 -5.0418 3.5666 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 3.9336 -1.1546 0.3181 37 1 3.9329 0.3032 1.3392 38 1 3.4281 -1.9358 2.9849 39 1 3.9196 -2.9736 4.4703 40 1 4.8094 -4.2902 6.3509 41 1 8.7207 -3.4987 5.2171 42 1 2.1079 -2.8135 0.8942 43 1 0.2790 -5.5779 1.2692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319954495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:46 Heat of formation + Delta-G solvation = -158.495891 kcal Electronic energy + Delta-G solvation = -31324.904508 eV Core-core repulsion = 26568.806474 eV Total energy + Delta-G solvation = -4756.098034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.10658 -48.66379 -48.50395 -41.90132 -40.37170 -38.76068 -35.56202 -34.92315 -34.29300 -33.14116 -32.12059 -29.72930 -27.67614 -27.36817 -26.20105 -25.32278 -23.87086 -23.19439 -21.92560 -20.85451 -19.98177 -19.43960 -19.42246 -19.12517 -18.57029 -17.81393 -17.00300 -16.66827 -16.58803 -16.39680 -15.84631 -15.70674 -15.39967 -15.30089 -15.25649 -15.07881 -14.97407 -14.95509 -14.82950 -14.69382 -14.57430 -14.20155 -13.94774 -13.78863 -13.42682 -12.90843 -12.89954 -12.86465 -12.71095 -12.45562 -12.26984 -11.95371 -11.78337 -11.53992 -11.41156 -11.33383 -11.28004 -10.86487 -10.75673 -10.60889 -10.13080 -8.95189 -7.85916 -5.13272 -0.78927 -0.33532 1.50838 1.54963 1.55380 1.61403 1.65004 1.92727 2.45105 2.61262 2.63744 2.96767 3.24160 3.31828 3.40433 3.46899 3.49931 3.82246 3.85093 3.90791 4.01106 4.28683 4.31410 4.42651 4.44816 4.45370 4.63781 4.66898 4.76635 4.92915 4.97893 5.06019 5.15684 5.23103 5.26048 5.29354 5.45240 5.62859 5.66799 5.77767 6.33901 6.34648 6.54052 6.95947 7.42635 8.12486 8.38051 9.36807 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.003596 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.963954 B = 7784.600494 C = 9554.732545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C -0.142 4.142 4 C 0.172 3.828 5 H 0.062 0.938 6 C 0.121 3.879 7 N -0.692 5.692 8 C 0.539 3.461 9 O -0.550 6.550 10 C -0.050 4.050 11 C -0.134 4.134 12 C 0.140 3.860 13 N -0.475 5.475 14 C 0.151 3.849 15 C -0.207 4.207 16 C 0.522 3.478 17 F -0.173 7.173 18 F -0.178 7.178 19 F -0.174 7.174 20 N -0.727 5.727 21 C -0.213 4.213 22 H 0.081 0.919 23 C -0.067 4.067 24 N -0.966 5.966 25 Si 0.954 3.046 26 H -0.267 1.267 27 H -0.307 1.307 28 H -0.297 1.297 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.413 0.587 39 H 0.167 0.833 40 H 0.209 0.791 41 H 0.198 0.802 42 H 0.372 0.628 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.075 6.794 8.188 15.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 C -0.199 4.199 4 C 0.064 3.936 5 H 0.080 0.920 6 C -0.003 4.003 7 N -0.343 5.343 8 C 0.324 3.676 9 O -0.430 6.430 10 C -0.061 4.061 11 C -0.155 4.155 12 C -0.016 4.016 13 N -0.184 5.184 14 C -0.006 4.006 15 C -0.211 4.211 16 C 0.467 3.533 17 F -0.155 7.155 18 F -0.159 7.159 19 F -0.156 7.156 20 N -0.367 5.367 21 C -0.345 4.345 22 H 0.099 0.901 23 C -0.259 4.259 24 N -0.617 5.617 25 Si 0.786 3.214 26 H -0.191 1.191 27 H -0.235 1.235 28 H -0.224 1.224 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.252 0.748 39 H 0.184 0.816 40 H 0.226 0.774 41 H 0.215 0.785 42 H 0.204 0.796 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.742 6.755 8.409 15.944 hybrid contribution -1.314 -0.455 -0.934 1.676 sum 10.428 6.300 7.474 14.293 Atomic orbital electron populations 1.21732 0.95367 1.01801 1.00307 1.21625 0.96425 0.96254 0.98493 1.21859 1.00894 0.94999 1.02186 1.20692 0.89741 0.86219 0.96986 0.92018 1.21743 0.94811 0.95643 0.88075 1.45794 1.05843 1.51946 1.30732 1.18386 0.83287 0.81097 0.84796 1.90832 1.55568 1.49070 1.47508 1.20257 0.93163 0.97011 0.95653 1.22733 1.01960 0.96348 0.94411 1.23683 0.91905 0.91586 0.94474 1.67899 1.03913 1.18996 1.27561 1.23096 1.01974 0.88640 0.86851 1.21208 0.93171 1.05983 1.00779 1.17826 0.79503 0.76742 0.79218 1.93156 1.40187 1.92779 1.89342 1.93216 1.95084 1.87720 1.39926 1.93207 1.95216 1.30717 1.96413 1.42598 1.17342 1.03269 1.73521 1.19493 0.93210 0.92035 1.29713 0.90150 1.25289 1.00919 0.96230 1.03498 1.69804 1.38237 0.99749 1.53952 0.85349 0.81258 0.77825 0.76978 1.19108 1.23478 1.22413 0.93321 0.93220 0.93124 0.93219 0.92359 0.92252 0.92086 0.92867 0.89520 0.74842 0.81569 0.77432 0.78520 0.79556 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.38 8.26 71.98 0.59 -3.78 16 2 C -0.11 -3.26 2.69 -10.80 -0.03 -3.29 16 3 C -0.14 -3.37 8.84 71.98 0.64 -2.74 16 4 C 0.17 5.66 2.18 44.99 0.10 5.75 16 5 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 6 C 0.12 3.72 4.73 86.38 0.41 4.13 16 7 N -0.69 -20.80 5.35 -465.68 -2.49 -23.29 16 8 C 0.54 17.06 7.63 86.88 0.66 17.72 16 9 O -0.55 -20.32 11.59 -3.77 -0.04 -20.36 16 10 C -0.05 -1.32 5.88 -19.88 -0.12 -1.44 16 11 C -0.13 -2.82 9.62 22.63 0.22 -2.60 16 12 C 0.14 2.47 11.17 84.67 0.95 3.41 16 13 N -0.48 -9.56 10.34 -196.00 -2.03 -11.58 16 14 C 0.15 3.06 10.59 84.68 0.90 3.96 16 15 C -0.21 -5.23 5.41 -19.50 -0.11 -5.34 16 16 C 0.52 14.69 2.78 71.24 0.20 14.88 16 17 F -0.17 -4.06 16.01 44.97 0.72 -3.34 16 18 F -0.18 -5.91 15.15 44.97 0.68 -5.23 16 19 F -0.17 -5.46 15.11 44.97 0.68 -4.78 16 20 N -0.73 -30.49 4.44 -322.95 -1.43 -31.93 16 21 C -0.21 -9.94 7.57 84.03 0.64 -9.30 16 22 H 0.08 3.63 7.40 -2.91 -0.02 3.60 16 23 C -0.07 -3.41 5.50 84.86 0.47 -2.94 16 24 N -0.97 -53.79 13.06 21.65 0.28 -53.51 16 25 Si 0.95 42.14 29.55 68.60 2.03 44.16 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.31 -14.16 7.11 99.48 0.71 -13.45 16 28 H -0.30 -13.19 7.11 99.48 0.71 -12.49 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 2.02 6.01 -2.39 -0.01 2.00 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.06 1.32 6.55 -2.39 -0.02 1.31 16 34 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 2.43 6.71 -2.39 -0.02 2.41 16 38 H 0.41 11.97 6.28 -92.70 -0.58 11.38 16 39 H 0.17 3.16 6.54 -2.91 -0.02 3.15 16 40 H 0.21 2.16 8.06 -2.91 -0.02 2.13 16 41 H 0.20 2.91 7.17 -2.91 -0.02 2.89 16 42 H 0.37 17.65 7.80 -92.71 -0.72 16.92 16 43 H 0.25 13.64 8.31 -92.70 -0.77 12.87 16 Total: -1.00 -61.82 362.52 3.69 -58.14 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.22 Total: 33.30 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 5.51 Total: 18.43 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -5.67 Total: -120.31 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.04 Total: -20.36 kcal Atomic # 9 Polarization: -15.43 SS G_CDS: 2.08 Total: -13.35 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -61.82 3.69 -58.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319954495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.360 kcal (2) G-P(sol) polarization free energy of solvation -61.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds