Wall clock time and date at job start Wed Apr 1 2020 03:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47178 * 2 1 4 4 H 1.09004 * 109.46866 * 305.00084 * 3 2 1 5 5 C 1.50697 * 109.47003 * 184.99900 * 3 2 1 6 6 N 1.34779 * 120.00268 * 60.00610 * 5 3 2 7 7 O 1.21284 * 119.99907 * 239.99716 * 5 3 2 8 8 N 1.46899 * 109.46816 * 65.00211 * 3 2 1 9 9 C 1.47849 * 111.00231 * 59.15715 * 8 3 2 10 10 C 1.54906 * 104.79428 * 146.36478 * 9 8 3 11 11 C 1.55142 * 101.65078 * 322.92755 * 10 9 8 12 12 O 1.42896 * 110.85747 * 277.19969 * 11 10 9 13 13 C 1.53004 * 110.69922 * 154.03892 * 11 10 9 14 14 N 1.46500 * 109.47331 * 66.40229 * 13 11 10 15 15 C 1.34774 * 119.99961 * 179.97438 * 14 13 11 16 16 O 1.21281 * 120.00138 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99741 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.47173 * 179.97438 * 17 15 14 19 19 C 1.76189 * 100.00097 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00127 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00013 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00034 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48490 * 109.46901 * 150.00205 * 23 21 19 27 27 C 1.47439 * 110.99982 * 180.02562 * 8 3 2 28 28 H 1.09004 * 109.46826 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47469 * 299.99617 * 1 2 3 30 30 H 1.09002 * 109.47398 * 59.99762 * 1 2 3 31 31 H 1.09006 * 109.47263 * 240.00208 * 2 1 3 32 32 H 1.09002 * 109.47398 * 120.00237 * 2 1 3 33 33 H 0.97005 * 119.99624 * 359.97438 * 6 5 3 34 34 H 0.96993 * 120.00020 * 179.97438 * 6 5 3 35 35 H 1.09002 * 110.37143 * 265.19361 * 9 8 3 36 36 H 1.09003 * 110.37260 * 27.52977 * 9 8 3 37 37 H 1.09001 * 110.98592 * 204.83826 * 10 9 8 38 38 H 1.08995 * 110.99349 * 81.02663 * 10 9 8 39 39 H 0.96696 * 114.00308 * 296.09141 * 12 11 10 40 40 H 1.08997 * 109.47505 * 306.39821 * 13 11 10 41 41 H 1.09002 * 109.46765 * 186.40285 * 13 11 10 42 42 H 0.97002 * 119.99685 * 0.02562 * 14 13 11 43 43 H 1.09005 * 109.47318 * 59.99759 * 17 15 14 44 44 H 1.09002 * 109.47150 * 299.99724 * 17 15 14 45 45 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.88897 * 117.33149 * 27 8 3 47 47 H 1.09000 * 110.02272 * 356.22422 * 27 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 7 4.1298 0.8912 -1.2032 7 8 4.2216 1.9436 0.7478 8 7 1.6514 2.0992 1.2553 9 6 2.2075 1.3823 2.4226 10 6 2.5047 2.4909 3.4629 11 6 2.9985 3.6481 2.5551 12 8 4.3826 3.4900 2.2370 13 6 2.7499 5.0025 3.2222 14 7 3.5893 5.1197 4.4171 15 6 3.5382 6.2367 5.1696 16 8 2.7977 7.1450 4.8572 17 6 4.4021 6.3575 6.3985 18 16 4.1090 7.9603 7.1868 19 6 5.2132 7.8352 8.5541 20 1 5.8091 6.9443 8.6872 21 6 5.3173 8.8816 9.4601 22 7 6.1419 8.7879 10.4818 23 14 4.2873 10.4228 9.2293 24 1 5.0354 11.3980 8.3960 25 1 3.0127 10.0698 8.5540 26 1 3.9949 11.0256 10.5545 27 6 2.1265 3.4945 1.2907 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5861 0.4917 -1.9001 34 1 5.0964 0.8927 -1.2830 35 1 1.4766 0.6769 2.8181 36 1 3.1260 0.8639 2.1473 37 1 3.2859 2.1772 4.1553 38 1 1.5999 2.7749 4.0002 39 1 4.9705 3.5411 3.0030 40 1 1.7005 5.0805 3.5062 41 1 2.9978 5.8021 2.5241 42 1 4.1824 4.3937 4.6663 43 1 5.4515 6.2793 6.1141 44 1 4.1543 5.5580 7.0968 45 1 6.2149 9.5194 11.1147 46 1 1.2761 4.1746 1.3414 47 1 2.7203 3.7093 0.4023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325067866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:01 Heat of formation + Delta-G solvation = -110.257505 kcal Electronic energy + Delta-G solvation = -28757.896800 eV Core-core repulsion = 24681.191231 eV Total energy + Delta-G solvation = -4076.705569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17441 -39.52018 -38.38945 -36.41128 -34.56922 -34.01254 -33.28930 -32.42672 -30.80643 -30.11748 -28.88939 -27.03173 -25.62747 -24.76089 -22.90352 -22.02540 -20.59957 -20.50330 -19.99532 -18.10208 -17.89989 -17.25914 -17.07365 -16.46519 -16.11586 -15.66160 -15.38928 -15.18205 -15.05225 -14.89055 -14.74495 -14.02305 -13.91914 -13.78206 -13.69822 -13.32470 -13.18024 -12.79458 -12.73007 -12.59946 -12.35905 -12.32688 -11.92686 -11.72603 -11.54765 -11.42911 -11.25865 -11.21239 -10.99711 -10.92487 -10.58262 -10.37144 -9.91314 -9.85964 -9.83027 -9.52979 -9.02309 -8.96698 -8.63131 -8.48965 -6.90652 -6.27854 -3.99471 2.35686 2.76199 2.98319 3.18250 3.29579 3.34883 3.48910 3.51806 3.65837 3.94823 4.23512 4.34236 4.39615 4.45331 4.49769 4.55875 4.69111 4.75682 4.89566 5.05070 5.08638 5.11165 5.17921 5.28018 5.29149 5.31310 5.49354 5.54710 5.60275 5.61782 5.66177 5.72413 5.78143 5.80691 5.92213 5.94155 6.01783 6.46224 6.47393 6.49356 6.54752 6.99441 7.54031 7.62123 7.95208 8.03281 8.42700 8.48557 9.18322 10.81325 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.030155 B = 0.001986 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.315359 B =14093.327222 C =14330.306698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.058 3.942 4 H 0.106 0.894 5 C 0.464 3.536 6 N -0.861 5.861 7 O -0.484 6.484 8 N -0.496 5.496 9 C 0.044 3.956 10 C -0.151 4.151 11 C 0.112 3.888 12 O -0.509 6.509 13 C 0.102 3.898 14 N -0.735 5.735 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.124 4.124 18 S -0.141 6.141 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.235 1.235 26 H -0.274 1.274 27 C 0.064 3.936 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.396 0.604 34 H 0.397 0.603 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.360 0.640 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.395 0.605 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.091 0.909 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.920 -22.506 -25.755 35.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.055 4.055 4 H 0.124 0.876 5 C 0.246 3.754 6 N -0.427 5.427 7 O -0.356 6.356 8 N -0.218 5.218 9 C -0.083 4.083 10 C -0.189 4.189 11 C 0.069 3.931 12 O -0.312 6.312 13 C -0.022 4.022 14 N -0.390 5.390 15 C 0.318 3.682 16 O -0.392 6.392 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.114 4.114 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.159 1.159 26 H -0.199 1.199 27 C -0.064 4.064 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.224 0.776 34 H 0.228 0.772 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.206 0.794 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.229 0.771 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.080 0.920 46 H 0.109 0.891 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.616 -20.581 -26.010 34.825 hybrid contribution 2.212 -0.859 0.656 2.462 sum -8.404 -21.440 -25.354 34.251 Atomic orbital electron populations 1.21676 0.94079 1.01415 1.03026 1.21538 0.97757 0.93161 1.02474 1.22171 0.90024 0.97840 0.95506 0.87603 1.22052 0.92514 0.78297 0.82506 1.44062 1.11310 1.63146 1.24172 1.91069 1.64987 1.41545 1.38000 1.64062 1.54912 1.01892 1.00943 1.23041 0.98839 0.96575 0.89831 1.23326 1.02138 0.95831 0.97599 1.22426 0.84273 0.91992 0.94387 1.86937 1.14105 1.94929 1.35277 1.21926 0.95875 0.97358 0.87090 1.45862 1.45638 1.19765 1.27737 1.20263 0.82668 0.81393 0.83884 1.90703 1.39283 1.38437 1.70784 1.23279 1.02086 1.04995 0.97112 1.84792 1.58123 1.17446 1.31136 1.22317 1.26711 1.07695 1.10156 0.89389 1.24722 0.94629 0.98200 0.93819 1.69942 1.35523 1.33053 1.13170 0.86726 0.82956 0.83433 0.78686 1.19213 1.15921 1.19949 1.22660 0.96544 0.90042 0.97163 0.92938 0.91125 0.92754 0.91444 0.91280 0.77639 0.77221 0.90683 0.91593 0.90506 0.89894 0.79371 0.90664 0.90952 0.77121 0.88492 0.88471 0.91954 0.89126 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 9.80 37.16 0.36 -0.29 16 2 C -0.11 -0.51 5.21 -26.73 -0.14 -0.65 16 3 C 0.06 0.36 2.10 -68.86 -0.14 0.22 16 4 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 5 C 0.46 3.61 6.08 -10.99 -0.07 3.54 16 6 N -0.86 -3.88 8.74 31.22 0.27 -3.61 16 7 O -0.48 -5.53 9.96 -19.46 -0.19 -5.72 16 8 N -0.50 -3.96 4.66 -224.64 -1.05 -5.01 16 9 C 0.04 0.37 4.73 -2.30 -0.01 0.36 16 10 C -0.15 -1.34 5.94 -24.59 -0.15 -1.49 16 11 C 0.11 1.12 0.84 -88.77 -0.07 1.04 16 12 O -0.51 -5.79 9.51 -60.24 -0.57 -6.37 16 13 C 0.10 1.22 4.71 -4.04 -0.02 1.20 16 14 N -0.73 -9.45 5.20 -60.29 -0.31 -9.76 16 15 C 0.53 9.56 7.85 -10.99 -0.09 9.47 16 16 O -0.52 -11.37 15.86 5.56 0.09 -11.28 16 17 C -0.12 -2.42 6.16 36.01 0.22 -2.20 16 18 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 19 C -0.52 -15.14 10.04 30.94 0.31 -14.83 16 20 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 21 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 23 Si 0.86 22.00 27.74 -169.99 -4.72 17.29 16 24 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 26 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 27 C 0.06 0.60 5.52 -2.82 -0.02 0.59 16 28 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.42 7.75 -51.93 -0.40 0.02 16 30 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.19 7.43 -51.93 -0.39 -0.20 16 32 H 0.07 0.39 6.86 -51.93 -0.36 0.03 16 33 H 0.40 0.65 8.19 -40.82 -0.33 0.32 16 34 H 0.40 1.76 8.93 -40.82 -0.36 1.39 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.07 0.65 5.57 -51.93 -0.29 0.36 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.76 8.02 -51.93 -0.42 0.34 16 39 H 0.36 3.40 7.78 45.56 0.35 3.75 16 40 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.39 3.96 7.27 -40.82 -0.30 3.66 16 43 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 44 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 45 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 46 H 0.09 0.79 7.82 -51.93 -0.41 0.39 16 47 H 0.07 0.73 6.51 -51.93 -0.34 0.39 16 LS Contribution 381.28 15.07 5.75 5.75 Total: -1.00 -36.75 381.28 -8.47 -45.21 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.61 Total: 5.42 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: 0.10 Total: -0.32 kcal Atomic # 7 Polarization: -44.04 SS G_CDS: -0.31 Total: -44.35 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.68 Total: -23.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.72 Total: 17.29 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.75 -8.47 -45.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325067866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.043 kcal (2) G-P(sol) polarization free energy of solvation -36.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds