Wall clock time and date at job start Wed Apr 1 2020 03:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47178 * 2 1 4 4 H 1.09004 * 109.46866 * 305.00084 * 3 2 1 5 5 C 1.50697 * 109.47003 * 184.99900 * 3 2 1 6 6 N 1.34779 * 120.00268 * 60.00610 * 5 3 2 7 7 O 1.21284 * 119.99907 * 239.99716 * 5 3 2 8 8 N 1.46899 * 109.46816 * 65.00211 * 3 2 1 9 9 C 1.47849 * 111.00231 * 59.15715 * 8 3 2 10 10 C 1.54906 * 104.79428 * 146.36478 * 9 8 3 11 11 C 1.55142 * 101.65078 * 322.92755 * 10 9 8 12 12 O 1.42896 * 110.85747 * 277.19969 * 11 10 9 13 13 C 1.53004 * 110.69922 * 154.03892 * 11 10 9 14 14 N 1.46500 * 109.47331 * 66.40229 * 13 11 10 15 15 C 1.34774 * 119.99961 * 179.97438 * 14 13 11 16 16 O 1.21281 * 120.00138 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99741 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.47173 * 179.97438 * 17 15 14 19 19 C 1.76189 * 100.00097 * 179.97438 * 18 17 15 20 20 H 1.07999 * 120.00127 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00013 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00034 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48490 * 109.46901 * 150.00205 * 23 21 19 27 27 C 1.47439 * 110.99982 * 180.02562 * 8 3 2 28 28 H 1.09004 * 109.46826 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47469 * 299.99617 * 1 2 3 30 30 H 1.09002 * 109.47398 * 59.99762 * 1 2 3 31 31 H 1.09006 * 109.47263 * 240.00208 * 2 1 3 32 32 H 1.09002 * 109.47398 * 120.00237 * 2 1 3 33 33 H 0.97005 * 119.99624 * 359.97438 * 6 5 3 34 34 H 0.96993 * 120.00020 * 179.97438 * 6 5 3 35 35 H 1.09002 * 110.37143 * 265.19361 * 9 8 3 36 36 H 1.09003 * 110.37260 * 27.52977 * 9 8 3 37 37 H 1.09001 * 110.98592 * 204.83826 * 10 9 8 38 38 H 1.08995 * 110.99349 * 81.02663 * 10 9 8 39 39 H 0.96696 * 114.00308 * 296.09141 * 12 11 10 40 40 H 1.08997 * 109.47505 * 306.39821 * 13 11 10 41 41 H 1.09002 * 109.46765 * 186.40285 * 13 11 10 42 42 H 0.97002 * 119.99685 * 0.02562 * 14 13 11 43 43 H 1.09005 * 109.47318 * 59.99759 * 17 15 14 44 44 H 1.09002 * 109.47150 * 299.99724 * 17 15 14 45 45 H 0.97001 * 119.99662 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.88897 * 117.33149 * 27 8 3 47 47 H 1.09000 * 110.02272 * 356.22422 * 27 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1238 6 7 4.1298 0.8912 -1.2032 7 8 4.2216 1.9436 0.7478 8 7 1.6514 2.0992 1.2553 9 6 2.2075 1.3823 2.4226 10 6 2.5047 2.4909 3.4629 11 6 2.9985 3.6481 2.5551 12 8 4.3826 3.4900 2.2370 13 6 2.7499 5.0025 3.2222 14 7 3.5893 5.1197 4.4171 15 6 3.5382 6.2367 5.1696 16 8 2.7977 7.1450 4.8572 17 6 4.4021 6.3575 6.3985 18 16 4.1090 7.9603 7.1868 19 6 5.2132 7.8352 8.5541 20 1 5.8091 6.9443 8.6872 21 6 5.3173 8.8816 9.4601 22 7 6.1419 8.7879 10.4818 23 14 4.2873 10.4228 9.2293 24 1 5.0354 11.3980 8.3960 25 1 3.0127 10.0698 8.5540 26 1 3.9949 11.0256 10.5545 27 6 2.1265 3.4945 1.2907 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.5861 0.4917 -1.9001 34 1 5.0964 0.8927 -1.2830 35 1 1.4766 0.6769 2.8181 36 1 3.1260 0.8639 2.1473 37 1 3.2859 2.1772 4.1553 38 1 1.5999 2.7749 4.0002 39 1 4.9705 3.5411 3.0030 40 1 1.7005 5.0805 3.5062 41 1 2.9978 5.8021 2.5241 42 1 4.1824 4.3937 4.6663 43 1 5.4515 6.2793 6.1141 44 1 4.1543 5.5580 7.0968 45 1 6.2149 9.5194 11.1147 46 1 1.2761 4.1746 1.3414 47 1 2.7203 3.7093 0.4023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325067866.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:00 Heat of formation + Delta-G solvation = -142.023041 kcal Electronic energy + Delta-G solvation = -28759.274257 eV Core-core repulsion = 24681.191231 eV Total energy + Delta-G solvation = -4078.083026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.84191 -40.73283 -39.30764 -37.13414 -35.31762 -35.04739 -34.67451 -33.82771 -31.83484 -30.98150 -29.95032 -27.90853 -27.61282 -25.70212 -23.42731 -22.62554 -21.80732 -21.41563 -20.59744 -19.96064 -18.48394 -18.31304 -17.87636 -17.67618 -17.13652 -16.89584 -16.65708 -16.42029 -16.12037 -15.83498 -15.57565 -15.38783 -14.94997 -14.81460 -14.67367 -14.52998 -14.33961 -14.00257 -13.63368 -13.36290 -13.35266 -13.27923 -13.02141 -12.85298 -12.77934 -12.68321 -12.39810 -12.24179 -11.95568 -11.87697 -11.66118 -11.62972 -11.17730 -11.06166 -10.99055 -10.71875 -10.54683 -10.36840 -10.22864 -9.26838 -9.00544 -8.52050 -6.22945 0.97307 1.31100 1.45967 1.52588 1.54557 1.80104 2.15566 2.24987 2.69919 2.72265 2.86041 2.88035 3.19041 3.51560 3.62798 3.78983 3.88812 3.94911 4.06945 4.19946 4.20616 4.31998 4.41795 4.44973 4.49573 4.54932 4.64777 4.70019 4.78036 4.88450 4.91484 4.98192 5.05077 5.16776 5.18612 5.29388 5.30940 5.56249 5.70244 5.82807 5.94323 6.05538 6.10965 6.35281 6.59491 6.84987 6.93011 7.12920 7.54375 8.60238 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.030155 B = 0.001986 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.315359 B =14093.327222 C =14330.306698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C 0.058 3.942 4 H 0.118 0.882 5 C 0.459 3.541 6 N -0.846 5.846 7 O -0.525 6.525 8 N -0.494 5.494 9 C 0.050 3.950 10 C -0.148 4.148 11 C 0.120 3.880 12 O -0.520 6.520 13 C 0.107 3.893 14 N -0.708 5.708 15 C 0.537 3.463 16 O -0.561 6.561 17 C -0.111 4.111 18 S -0.175 6.175 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.044 3.956 22 N -0.916 5.916 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.237 1.237 26 H -0.259 1.259 27 C 0.065 3.935 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.411 0.589 34 H 0.400 0.600 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.366 0.634 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.412 0.588 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.277 0.723 46 H 0.095 0.905 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 -23.876 -27.480 37.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.055 4.055 4 H 0.136 0.864 5 C 0.242 3.758 6 N -0.412 5.412 7 O -0.401 6.401 8 N -0.216 5.216 9 C -0.078 4.078 10 C -0.187 4.187 11 C 0.078 3.922 12 O -0.325 6.325 13 C -0.018 4.018 14 N -0.363 5.363 15 C 0.323 3.677 16 O -0.439 6.439 17 C -0.262 4.262 18 S 0.051 5.949 19 C -0.676 4.676 20 H 0.081 0.919 21 C -0.161 4.161 22 N -0.554 5.554 23 Si 0.737 3.263 24 H -0.188 1.188 25 H -0.161 1.161 26 H -0.183 1.183 27 C -0.064 4.064 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.078 0.922 33 H 0.242 0.758 34 H 0.230 0.770 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.213 0.787 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.249 0.751 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.086 0.914 46 H 0.113 0.887 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.600 -22.030 -27.782 37.305 hybrid contribution 2.569 -0.619 1.057 2.846 sum -9.031 -22.648 -26.725 36.177 Atomic orbital electron populations 1.21641 0.93909 1.01759 1.02577 1.21531 0.97746 0.91950 1.03115 1.22285 0.89275 0.98917 0.95015 0.86385 1.22299 0.93023 0.77900 0.82578 1.43924 1.11660 1.61948 1.23657 1.91045 1.65825 1.43598 1.39617 1.64094 1.54626 1.01246 1.01674 1.22978 0.98538 0.96411 0.89831 1.23319 1.02252 0.95450 0.97649 1.22365 0.84030 0.91004 0.94832 1.86965 1.14701 1.94877 1.35939 1.21993 0.95462 0.98256 0.86079 1.45585 1.45148 1.18579 1.26977 1.19950 0.81974 0.82075 0.83706 1.90694 1.41137 1.40254 1.71819 1.23266 1.03567 1.01527 0.97837 1.84721 1.57352 1.22399 1.30398 1.22456 1.26885 1.06837 1.11446 0.91906 1.25579 0.95742 1.01156 0.93625 1.70018 1.36942 1.34361 1.14094 0.85858 0.81306 0.79878 0.79273 1.18763 1.16072 1.18275 1.22644 0.96325 0.91154 0.96228 0.92216 0.92661 0.92093 0.89224 0.92226 0.75814 0.76988 0.89749 0.92821 0.89913 0.89843 0.78717 0.90700 0.92332 0.75107 0.86848 0.86629 0.91365 0.88711 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.80 71.98 0.71 -0.29 16 2 C -0.11 -0.73 5.21 30.59 0.16 -0.57 16 3 C 0.06 0.62 2.10 44.17 0.09 0.71 16 4 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 5 C 0.46 6.51 6.08 87.66 0.53 7.04 16 6 N -0.85 -6.07 8.74 -173.53 -1.52 -7.58 16 7 O -0.53 -11.60 9.96 20.87 0.21 -11.39 16 8 N -0.49 -7.24 4.66 -864.64 -4.03 -11.27 16 9 C 0.05 0.77 4.73 86.77 0.41 1.18 16 10 C -0.15 -2.42 5.94 31.98 0.19 -2.23 16 11 C 0.12 2.27 0.84 -9.60 -0.01 2.26 16 12 O -0.52 -11.38 9.51 -125.06 -1.19 -12.57 16 13 C 0.11 2.43 4.71 86.38 0.41 2.84 16 14 N -0.71 -17.12 5.20 -463.06 -2.41 -19.53 16 15 C 0.54 18.68 7.85 87.66 0.69 19.37 16 16 O -0.56 -24.37 15.86 -3.03 -0.05 -24.41 16 17 C -0.11 -4.20 6.16 71.24 0.44 -3.76 16 18 S -0.18 -8.94 18.55 -56.49 -1.05 -9.98 16 19 C -0.53 -30.99 10.04 67.96 0.68 -30.30 16 20 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 21 C 0.04 2.63 5.50 84.86 0.47 3.09 16 22 N -0.92 -56.12 13.97 21.65 0.30 -55.82 16 23 Si 0.91 45.43 27.74 68.60 1.90 47.33 16 24 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 25 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 26 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 27 C 0.06 1.16 5.52 86.66 0.48 1.64 16 28 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.05 0.57 7.75 -2.39 -0.02 0.55 16 30 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.09 0.23 7.43 -2.38 -0.02 0.21 16 32 H 0.06 0.56 6.86 -2.39 -0.02 0.54 16 33 H 0.41 0.33 8.19 -92.70 -0.76 -0.43 16 34 H 0.40 2.92 8.93 -92.71 -0.83 2.09 16 35 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 36 H 0.05 1.00 5.57 -2.39 -0.01 0.99 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.37 8.02 -2.39 -0.02 1.35 16 39 H 0.37 6.45 7.78 -74.06 -0.58 5.87 16 40 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 41 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.41 7.37 7.27 -92.71 -0.67 6.69 16 43 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 44 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 45 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 46 H 0.09 1.57 7.82 -2.39 -0.02 1.56 16 47 H 0.06 1.16 6.51 -2.39 -0.02 1.15 16 Total: -1.00 -79.78 381.28 -4.42 -84.20 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -1.84 Total: 20.02 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.24 Total: 0.99 kcal Atomic # 7 Polarization: -86.54 SS G_CDS: -7.65 Total: -94.19 kcal Atomic # 8 Polarization: -47.34 SS G_CDS: -1.03 Total: -48.37 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.33 kcal Atomic # 16 Polarization: -8.94 SS G_CDS: -1.05 Total: -9.98 kcal Total: -79.78 -4.42 -84.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325067866.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.821 kcal (2) G-P(sol) polarization free energy of solvation -79.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds