Wall clock time and date at job start Wed Apr 1 2020 03:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47492 * 2 1 4 4 H 1.08992 * 109.47133 * 179.75351 * 3 2 1 5 5 C 1.50697 * 109.46754 * 59.75495 * 3 2 1 6 6 N 1.34780 * 120.00249 * 60.00189 * 5 3 2 7 7 O 1.21283 * 119.99984 * 240.00123 * 5 3 2 8 8 N 1.46900 * 109.47048 * 299.75838 * 3 2 1 9 9 C 1.47844 * 110.99982 * 307.16602 * 8 3 2 10 10 C 1.54903 * 104.79533 * 213.63634 * 9 8 3 11 11 C 1.55141 * 101.65541 * 37.07000 * 10 9 8 12 12 O 1.42897 * 110.70755 * 82.72628 * 11 10 9 13 13 C 1.52996 * 110.70610 * 205.96263 * 11 10 9 14 14 N 1.46492 * 109.47372 * 298.59621 * 13 11 10 15 15 C 1.34777 * 120.00209 * 179.97438 * 14 13 11 16 16 O 1.21284 * 119.99741 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00081 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47020 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99787 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00226 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99835 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99791 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47072 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47382 * 119.99668 * 23 21 19 26 26 H 1.48500 * 109.47124 * 239.99688 * 23 21 19 27 27 C 1.47443 * 111.00170 * 186.32118 * 8 3 2 28 28 H 1.09003 * 109.47226 * 54.75563 * 1 2 3 29 29 H 1.09000 * 109.47083 * 294.75652 * 1 2 3 30 30 H 1.09005 * 109.47260 * 174.75282 * 1 2 3 31 31 H 1.09001 * 109.47080 * 120.00401 * 2 1 3 32 32 H 1.09001 * 109.47342 * 239.99608 * 2 1 3 33 33 H 0.96999 * 119.99536 * 0.02562 * 6 5 3 34 34 H 0.96996 * 119.99732 * 179.97438 * 6 5 3 35 35 H 1.09011 * 110.37190 * 332.46619 * 9 8 3 36 36 H 1.08998 * 110.37948 * 94.80267 * 9 8 3 37 37 H 1.08998 * 110.99400 * 278.97555 * 10 9 8 38 38 H 1.09001 * 111.02450 * 155.17250 * 10 9 8 39 39 H 0.96696 * 114.00252 * 66.40403 * 12 11 10 40 40 H 1.09007 * 109.47123 * 58.59887 * 13 11 10 41 41 H 1.09001 * 109.46993 * 178.59474 * 13 11 10 42 42 H 0.97002 * 120.00192 * 0.02562 * 14 13 11 43 43 H 1.08995 * 109.47045 * 299.99918 * 17 15 14 44 44 H 1.08993 * 109.47166 * 60.00394 * 17 15 14 45 45 H 0.97001 * 120.00275 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.88646 * 242.66641 * 27 8 3 47 47 H 1.08999 * 109.88473 * 3.68535 * 27 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4424 0.0044 5 6 1.5328 2.1546 1.2274 6 7 1.8534 1.6958 2.4535 7 8 0.8360 3.1405 1.1120 8 7 1.5552 2.1333 -1.2023 9 6 1.8884 1.3689 -2.4232 10 6 2.1500 2.4461 -3.5053 11 6 2.8604 3.5520 -2.6813 12 8 4.2528 3.2625 -2.5418 13 6 2.6536 4.9240 -3.3259 14 7 3.2371 4.9252 -4.6697 15 6 3.1733 6.0354 -5.4311 16 8 2.6333 7.0337 -5.0036 17 6 3.7730 6.0364 -6.8137 18 16 3.5284 7.6596 -7.5762 19 6 4.3017 7.3848 -9.1354 20 1 4.7397 6.4232 -9.3589 21 6 4.3488 8.4044 -10.0760 22 7 3.8154 9.5764 -9.8034 23 14 5.1692 8.1133 -11.7287 24 1 5.6873 6.7227 -11.7861 25 1 4.1787 8.3182 -12.8161 26 1 6.2943 9.0676 -11.8978 27 6 2.1483 3.4785 -1.3142 28 1 -0.3634 0.5930 -0.8393 29 1 -0.3633 0.4303 0.9332 30 1 -0.3634 -1.0234 -0.0940 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 2.4110 0.9075 2.5458 34 1 1.5272 2.1544 3.2435 35 1 2.7833 0.7677 -2.2621 36 1 1.0513 0.7343 -2.7140 37 1 1.2135 2.8130 -3.9254 38 1 2.8034 2.0626 -4.2889 39 1 4.7465 3.2954 -3.3726 40 1 1.5866 5.1369 -3.3929 41 1 3.1391 5.6878 -2.7184 42 1 3.6687 4.1267 -5.0117 43 1 4.8399 5.8237 -6.7470 44 1 3.2874 5.2725 -7.4208 45 1 3.8479 10.2889 -10.4608 46 1 1.3648 4.2346 -1.2630 47 1 2.8672 3.6348 -0.5099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325067867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:04 Heat of formation + Delta-G solvation = -118.672137 kcal Electronic energy + Delta-G solvation = -28240.597786 eV Core-core repulsion = 24163.527331 eV Total energy + Delta-G solvation = -4077.070455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95099 -39.66200 -38.67147 -36.67435 -34.58091 -34.16180 -33.37237 -32.44255 -30.83708 -30.18397 -28.82439 -26.97858 -25.56029 -24.85989 -23.33607 -21.92201 -20.78886 -20.40441 -19.93332 -18.10573 -17.96786 -17.25690 -17.05964 -16.49767 -16.24908 -15.85566 -15.52642 -15.41034 -15.03635 -14.81743 -14.72123 -14.20838 -13.95003 -13.75469 -13.72587 -13.46614 -13.19352 -12.93466 -12.82709 -12.62362 -12.56248 -12.21649 -11.95213 -11.84383 -11.70603 -11.42605 -11.36830 -11.09399 -11.08077 -11.03449 -10.76455 -10.28130 -10.13882 -10.04283 -9.82102 -9.46305 -9.09552 -8.98316 -8.69886 -8.24744 -6.51606 -6.23018 -3.93745 2.31859 2.93181 2.97702 3.05264 3.20610 3.26403 3.30724 3.52690 3.65111 3.72743 4.14513 4.18782 4.26531 4.32312 4.44703 4.46889 4.66666 4.78662 4.90275 4.96898 5.05861 5.12200 5.12789 5.23570 5.28120 5.40482 5.48278 5.51934 5.55932 5.61932 5.64035 5.70323 5.75830 5.85399 5.87996 6.00911 6.09650 6.35323 6.47607 6.49987 6.54068 6.95619 7.22527 7.57521 7.59378 7.93211 8.33908 8.55284 9.22330 10.84453 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.001828 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.352585 B =15313.041942 C =15709.159607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.059 3.941 4 H 0.072 0.928 5 C 0.523 3.477 6 N -0.859 5.859 7 O -0.520 6.520 8 N -0.500 5.500 9 C 0.048 3.952 10 C -0.154 4.154 11 C 0.098 3.902 12 O -0.551 6.551 13 C 0.105 3.895 14 N -0.740 5.740 15 C 0.533 3.467 16 O -0.512 6.512 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.071 3.929 28 H 0.074 0.926 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.399 0.601 34 H 0.402 0.598 35 H 0.053 0.947 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.377 0.623 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.393 0.607 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.268 0.732 46 H 0.103 0.897 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.558 -24.976 22.151 33.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.054 4.054 4 H 0.089 0.911 5 C 0.307 3.693 6 N -0.424 5.424 7 O -0.393 6.393 8 N -0.224 5.224 9 C -0.079 4.079 10 C -0.193 4.193 11 C 0.056 3.944 12 O -0.358 6.358 13 C -0.020 4.020 14 N -0.395 5.395 15 C 0.319 3.681 16 O -0.386 6.386 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.057 4.057 28 H 0.093 0.907 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.227 0.773 34 H 0.233 0.767 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.099 0.901 39 H 0.226 0.774 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.227 0.773 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.121 0.879 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.672 -22.497 23.222 32.540 hybrid contribution 2.631 -1.960 -1.922 3.803 sum -1.040 -24.457 21.300 32.449 Atomic orbital electron populations 1.21738 0.94267 1.01513 1.03186 1.21616 0.97936 0.92837 1.02870 1.21869 0.98395 0.94853 0.90259 0.91065 1.20412 0.79896 0.84273 0.84766 1.43859 1.56481 1.34018 1.08062 1.90775 1.36438 1.25680 1.86451 1.63501 1.56445 1.01881 1.00587 1.23032 1.00150 0.96032 0.88672 1.23393 1.02179 0.96006 0.97696 1.22786 0.82033 0.93021 0.96573 1.86549 1.19297 1.93066 1.36852 1.21842 1.00202 0.96414 0.83565 1.45935 1.61884 1.15448 1.16270 1.20317 0.78961 0.82314 0.86535 1.90722 1.42339 1.32496 1.73037 1.23526 1.03318 1.08291 0.95243 1.85445 1.76399 1.06596 1.14851 1.22903 1.43060 1.01576 1.00848 0.90872 1.25002 0.95331 0.94445 0.98869 1.70024 1.42229 1.02723 1.35233 0.86109 0.78951 0.78373 0.82001 1.19633 1.20554 1.20567 1.22726 0.97198 0.91933 0.93879 0.90738 0.93053 0.92868 0.91260 0.90530 0.77302 0.76713 0.92916 0.89663 0.89005 0.90074 0.77441 0.90131 0.90593 0.77328 0.89227 0.89207 0.92205 0.87858 0.91637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.47 37.16 0.35 -0.59 16 2 C -0.11 -0.56 5.23 -26.73 -0.14 -0.70 16 3 C 0.06 0.42 1.77 -68.87 -0.12 0.30 16 4 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 5 C 0.52 4.49 5.78 -10.99 -0.06 4.43 16 6 N -0.86 -3.93 8.77 31.22 0.27 -3.66 16 7 O -0.52 -6.80 16.17 5.55 0.09 -6.71 16 8 N -0.50 -4.39 3.93 -224.68 -0.88 -5.27 16 9 C 0.05 0.34 5.18 -2.30 -0.01 0.33 16 10 C -0.15 -1.17 5.70 -24.59 -0.14 -1.31 16 11 C 0.10 0.90 0.93 -88.80 -0.08 0.82 16 12 O -0.55 -5.00 13.11 -35.23 -0.46 -5.46 16 13 C 0.10 1.24 4.75 -4.05 -0.02 1.22 16 14 N -0.74 -9.22 5.13 -60.30 -0.31 -9.53 16 15 C 0.53 9.70 7.85 -10.98 -0.09 9.62 16 16 O -0.51 -11.65 15.86 5.55 0.09 -11.57 16 17 C -0.15 -3.01 6.16 36.01 0.22 -2.79 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 19 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.13 13.22 55.49 0.73 -25.40 16 23 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.07 0.73 4.81 -2.84 -0.01 0.71 16 28 H 0.07 0.60 7.16 -51.93 -0.37 0.23 16 29 H 0.05 0.38 7.40 -51.93 -0.38 -0.01 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.20 7.57 -51.93 -0.39 -0.19 16 32 H 0.08 0.33 6.66 -51.93 -0.35 -0.01 16 33 H 0.40 0.65 8.25 -40.82 -0.34 0.31 16 34 H 0.40 1.59 8.93 -40.82 -0.36 1.22 16 35 H 0.05 0.34 7.25 -51.92 -0.38 -0.04 16 36 H 0.09 0.55 7.97 -51.93 -0.41 0.13 16 37 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 38 H 0.08 0.50 8.03 -51.93 -0.42 0.08 16 39 H 0.38 2.46 8.06 45.56 0.37 2.83 16 40 H 0.08 1.04 8.09 -51.93 -0.42 0.61 16 41 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.39 3.55 7.29 -40.82 -0.30 3.25 16 43 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 44 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.10 1.21 7.78 -51.93 -0.40 0.81 16 47 H 0.07 0.73 7.17 -51.93 -0.37 0.36 16 LS Contribution 392.67 15.07 5.92 5.92 Total: -1.00 -37.91 392.67 -8.30 -46.20 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -6.60 Total: 3.86 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 0.09 Total: -0.86 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.18 Total: -43.85 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.28 Total: -23.74 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.91 -8.30 -46.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325067867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.470 kcal (2) G-P(sol) polarization free energy of solvation -37.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds