Wall clock time and date at job start Wed Apr 1 2020 03:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47492 * 2 1 4 4 H 1.08992 * 109.47133 * 179.75351 * 3 2 1 5 5 C 1.50697 * 109.46754 * 59.75495 * 3 2 1 6 6 N 1.34780 * 120.00249 * 60.00189 * 5 3 2 7 7 O 1.21283 * 119.99984 * 240.00123 * 5 3 2 8 8 N 1.46900 * 109.47048 * 299.75838 * 3 2 1 9 9 C 1.47844 * 110.99982 * 307.16602 * 8 3 2 10 10 C 1.54903 * 104.79533 * 213.63634 * 9 8 3 11 11 C 1.55141 * 101.65541 * 37.07000 * 10 9 8 12 12 O 1.42897 * 110.70755 * 82.72628 * 11 10 9 13 13 C 1.52996 * 110.70610 * 205.96263 * 11 10 9 14 14 N 1.46492 * 109.47372 * 298.59621 * 13 11 10 15 15 C 1.34777 * 120.00209 * 179.97438 * 14 13 11 16 16 O 1.21284 * 119.99741 * 0.02562 * 15 14 13 17 17 C 1.50702 * 120.00081 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47020 * 180.02562 * 17 15 14 19 19 C 1.76197 * 99.99787 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00226 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99835 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99791 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99984 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47072 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47382 * 119.99668 * 23 21 19 26 26 H 1.48500 * 109.47124 * 239.99688 * 23 21 19 27 27 C 1.47443 * 111.00170 * 186.32118 * 8 3 2 28 28 H 1.09003 * 109.47226 * 54.75563 * 1 2 3 29 29 H 1.09000 * 109.47083 * 294.75652 * 1 2 3 30 30 H 1.09005 * 109.47260 * 174.75282 * 1 2 3 31 31 H 1.09001 * 109.47080 * 120.00401 * 2 1 3 32 32 H 1.09001 * 109.47342 * 239.99608 * 2 1 3 33 33 H 0.96999 * 119.99536 * 0.02562 * 6 5 3 34 34 H 0.96996 * 119.99732 * 179.97438 * 6 5 3 35 35 H 1.09011 * 110.37190 * 332.46619 * 9 8 3 36 36 H 1.08998 * 110.37948 * 94.80267 * 9 8 3 37 37 H 1.08998 * 110.99400 * 278.97555 * 10 9 8 38 38 H 1.09001 * 111.02450 * 155.17250 * 10 9 8 39 39 H 0.96696 * 114.00252 * 66.40403 * 12 11 10 40 40 H 1.09007 * 109.47123 * 58.59887 * 13 11 10 41 41 H 1.09001 * 109.46993 * 178.59474 * 13 11 10 42 42 H 0.97002 * 120.00192 * 0.02562 * 14 13 11 43 43 H 1.08995 * 109.47045 * 299.99918 * 17 15 14 44 44 H 1.08993 * 109.47166 * 60.00394 * 17 15 14 45 45 H 0.97001 * 120.00275 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.88646 * 242.66641 * 27 8 3 47 47 H 1.08999 * 109.88473 * 3.68535 * 27 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1300 1.4424 0.0044 5 6 1.5328 2.1546 1.2274 6 7 1.8534 1.6958 2.4535 7 8 0.8360 3.1405 1.1120 8 7 1.5552 2.1333 -1.2023 9 6 1.8884 1.3689 -2.4232 10 6 2.1500 2.4461 -3.5053 11 6 2.8604 3.5520 -2.6813 12 8 4.2528 3.2625 -2.5418 13 6 2.6536 4.9240 -3.3259 14 7 3.2371 4.9252 -4.6697 15 6 3.1733 6.0354 -5.4311 16 8 2.6333 7.0337 -5.0036 17 6 3.7730 6.0364 -6.8137 18 16 3.5284 7.6596 -7.5762 19 6 4.3017 7.3848 -9.1354 20 1 4.7397 6.4232 -9.3589 21 6 4.3488 8.4044 -10.0760 22 7 3.8154 9.5764 -9.8034 23 14 5.1692 8.1133 -11.7287 24 1 5.6873 6.7227 -11.7861 25 1 4.1787 8.3182 -12.8161 26 1 6.2943 9.0676 -11.8978 27 6 2.1483 3.4785 -1.3142 28 1 -0.3634 0.5930 -0.8393 29 1 -0.3633 0.4303 0.9332 30 1 -0.3634 -1.0234 -0.0940 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 2.4110 0.9075 2.5458 34 1 1.5272 2.1544 3.2435 35 1 2.7833 0.7677 -2.2621 36 1 1.0513 0.7343 -2.7140 37 1 1.2135 2.8130 -3.9254 38 1 2.8034 2.0626 -4.2889 39 1 4.7465 3.2954 -3.3726 40 1 1.5866 5.1369 -3.3929 41 1 3.1391 5.6878 -2.7184 42 1 3.6687 4.1267 -5.0117 43 1 4.8399 5.8237 -6.7470 44 1 3.2874 5.2725 -7.4208 45 1 3.8479 10.2889 -10.4608 46 1 1.3648 4.2346 -1.2630 47 1 2.8672 3.6348 -0.5099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325067867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:03 Heat of formation + Delta-G solvation = -153.172324 kcal Electronic energy + Delta-G solvation = -28242.093826 eV Core-core repulsion = 24163.527331 eV Total energy + Delta-G solvation = -4078.566495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66577 -40.73595 -39.72373 -37.42471 -35.36132 -35.19869 -34.58076 -33.94173 -31.83499 -31.04014 -29.93087 -27.77847 -27.54044 -25.84761 -23.87044 -22.61409 -21.72744 -21.54593 -20.53103 -19.92223 -18.51114 -18.40124 -17.78924 -17.68024 -16.98178 -16.87854 -16.75453 -16.60680 -16.38576 -15.95920 -15.64227 -15.51384 -14.98181 -14.72298 -14.52147 -14.46098 -14.31586 -14.19635 -13.72711 -13.60451 -13.43397 -13.17100 -13.15446 -12.91274 -12.75837 -12.60867 -12.48435 -12.35749 -12.07953 -11.88888 -11.75786 -11.67296 -11.15751 -11.05242 -10.98682 -10.82296 -10.60418 -10.26203 -10.24099 -9.32287 -8.66837 -8.34451 -6.12614 1.26282 1.42057 1.47003 1.57810 1.57984 1.68712 2.16645 2.27708 2.43394 2.90080 2.99992 3.03993 3.30441 3.45636 3.49280 3.71273 3.86842 3.94618 3.98513 4.15370 4.20439 4.30599 4.31270 4.37288 4.41778 4.50922 4.59442 4.66909 4.71878 4.86947 4.87669 4.94840 5.02198 5.09229 5.11593 5.19579 5.28871 5.42754 5.50105 5.82482 5.88777 6.00644 6.20471 6.40329 6.52015 6.63240 7.07017 7.19160 7.40407 8.75017 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.030716 B = 0.001828 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.352585 B =15313.041942 C =15709.159607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.108 4.108 3 C 0.059 3.941 4 H 0.082 0.918 5 C 0.517 3.483 6 N -0.840 5.840 7 O -0.575 6.575 8 N -0.513 5.513 9 C 0.051 3.949 10 C -0.151 4.151 11 C 0.114 3.886 12 O -0.555 6.555 13 C 0.108 3.892 14 N -0.707 5.707 15 C 0.535 3.465 16 O -0.566 6.566 17 C -0.127 4.127 18 S -0.157 6.157 19 C -0.543 4.543 20 H 0.085 0.915 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.254 1.254 25 H -0.275 1.275 26 H -0.275 1.275 27 C 0.074 3.926 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.416 0.584 34 H 0.406 0.594 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.390 0.610 40 H 0.068 0.932 41 H 0.057 0.943 42 H 0.415 0.585 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.271 0.729 46 H 0.077 0.923 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 -29.024 21.667 36.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.053 4.053 4 H 0.099 0.901 5 C 0.301 3.699 6 N -0.405 5.405 7 O -0.454 6.454 8 N -0.238 5.238 9 C -0.076 4.076 10 C -0.189 4.189 11 C 0.071 3.929 12 O -0.363 6.363 13 C -0.017 4.017 14 N -0.363 5.363 15 C 0.321 3.679 16 O -0.443 6.443 17 C -0.278 4.278 18 S 0.070 5.930 19 C -0.691 4.691 20 H 0.104 0.896 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.178 1.178 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.054 4.054 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.247 0.753 34 H 0.238 0.762 35 H 0.086 0.914 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.241 0.759 40 H 0.086 0.914 41 H 0.076 0.924 42 H 0.253 0.747 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.816 -26.659 22.777 35.111 hybrid contribution 2.054 -0.800 -1.595 2.721 sum 0.238 -27.459 21.181 34.680 Atomic orbital electron populations 1.21693 0.95513 1.01799 1.01451 1.21657 0.96661 0.91394 1.04896 1.21960 0.98835 0.95693 0.88842 0.90057 1.20818 0.79216 0.83667 0.86173 1.43710 1.55537 1.34112 1.07113 1.90756 1.39175 1.28132 1.87305 1.63450 1.56869 1.01490 1.01995 1.23096 1.01208 0.95762 0.87514 1.23404 1.01926 0.95335 0.98242 1.22518 0.82557 0.91761 0.96039 1.86541 1.18951 1.92819 1.38027 1.21859 0.99143 0.98025 0.82700 1.45540 1.60367 1.14575 1.15772 1.20131 0.78487 0.82887 0.86417 1.90716 1.44879 1.34805 1.73944 1.23354 1.05230 1.03615 0.95629 1.85678 1.77189 1.13553 1.16536 1.23240 1.42850 1.02172 1.00853 0.89645 1.26158 0.95854 0.93991 1.03372 1.70195 1.43889 1.03945 1.36869 0.84885 0.77704 0.79054 0.76171 1.17788 1.20046 1.20074 1.22524 0.96202 0.92691 0.94002 0.92789 0.94614 0.91395 0.88593 0.89095 0.75263 0.76235 0.91365 0.88726 0.89992 0.87612 0.75922 0.91356 0.92435 0.74685 0.86804 0.86806 0.92044 0.90473 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.47 71.98 0.68 -0.95 16 2 C -0.11 -0.75 5.23 30.59 0.16 -0.59 16 3 C 0.06 0.74 1.77 44.17 0.08 0.82 16 4 H 0.08 0.89 8.06 -2.39 -0.02 0.87 16 5 C 0.52 8.68 5.78 87.66 0.51 9.19 16 6 N -0.84 -6.60 8.77 -173.53 -1.52 -8.12 16 7 O -0.58 -15.78 16.17 -3.04 -0.05 -15.83 16 8 N -0.51 -8.57 3.93 -864.76 -3.40 -11.97 16 9 C 0.05 0.59 5.18 86.77 0.45 1.04 16 10 C -0.15 -1.92 5.70 31.98 0.18 -1.74 16 11 C 0.11 1.95 0.93 -9.61 -0.01 1.94 16 12 O -0.56 -8.68 13.11 -148.98 -1.95 -10.64 16 13 C 0.11 2.54 4.75 86.38 0.41 2.95 16 14 N -0.71 -16.49 5.13 -463.07 -2.37 -18.87 16 15 C 0.53 19.22 7.85 87.66 0.69 19.91 16 16 O -0.57 -26.53 15.86 -3.04 -0.05 -26.57 16 17 C -0.13 -4.82 6.16 71.24 0.44 -4.39 16 18 S -0.16 -8.65 20.57 -56.49 -1.16 -9.81 16 19 C -0.54 -30.66 9.50 67.96 0.65 -30.01 16 20 H 0.09 4.43 7.80 -2.91 -0.02 4.41 16 21 C 0.01 0.61 5.49 84.86 0.47 1.08 16 22 N -0.91 -56.16 13.22 21.65 0.29 -55.87 16 23 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 24 H -0.25 -10.17 7.11 99.48 0.71 -9.46 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 27 C 0.07 1.55 4.81 86.65 0.42 1.97 16 28 H 0.05 0.83 7.16 -2.39 -0.02 0.81 16 29 H 0.03 0.50 7.40 -2.39 -0.02 0.48 16 30 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.10 0.18 7.57 -2.39 -0.02 0.16 16 32 H 0.09 0.43 6.66 -2.39 -0.02 0.41 16 33 H 0.42 0.33 8.25 -92.71 -0.77 -0.44 16 34 H 0.41 2.86 8.93 -92.71 -0.83 2.04 16 35 H 0.07 0.61 7.25 -2.38 -0.02 0.59 16 36 H 0.09 0.95 7.97 -2.39 -0.02 0.94 16 37 H 0.08 1.25 8.05 -2.39 -0.02 1.23 16 38 H 0.11 0.84 8.03 -2.39 -0.02 0.82 16 39 H 0.39 3.71 8.06 -74.06 -0.60 3.11 16 40 H 0.07 1.83 8.09 -2.38 -0.02 1.81 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.42 6.09 7.29 -92.71 -0.68 5.41 16 43 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 44 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 45 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 46 H 0.08 1.98 7.78 -2.39 -0.02 1.96 16 47 H 0.05 1.20 7.17 -2.39 -0.02 1.19 16 Total: -1.00 -87.38 392.67 -4.91 -92.29 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -1.83 Total: 18.89 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 5.11 Total: 1.21 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -7.01 Total: -94.84 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -2.05 Total: -53.04 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -87.38 -4.91 -92.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325067867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.880 kcal (2) G-P(sol) polarization free energy of solvation -87.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds