Wall clock time and date at job start Wed Apr 1 2020 03:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.47031 * 2 1 4 4 H 1.08998 * 109.46628 * 304.99919 * 3 2 1 5 5 C 1.50698 * 109.46917 * 184.99819 * 3 2 1 6 6 H 1.07995 * 120.00267 * 239.99349 * 5 3 2 7 7 C 1.37884 * 120.00038 * 60.00327 * 5 3 2 8 8 N 1.31517 * 119.99799 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00085 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46985 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47437 * 119.99829 * 9 7 5 12 12 H 1.48505 * 109.47361 * 240.00207 * 9 7 5 13 13 N 1.46491 * 109.46893 * 65.00079 * 3 2 1 14 14 C 1.34780 * 120.00146 * 274.99740 * 13 3 2 15 15 O 1.21280 * 119.99828 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00382 * 180.02562 * 14 13 3 17 17 C 1.50704 * 109.47095 * 180.02562 * 16 14 13 18 18 N 1.30334 * 126.18035 * 89.97986 * 17 16 14 19 19 N 1.28662 * 109.54429 * 179.97438 * 18 17 16 20 20 C 1.31294 * 109.24486 * 359.97438 * 19 18 17 21 21 C 1.47726 * 126.38636 * 179.73792 * 20 19 18 22 22 C 1.39559 * 120.17378 * 180.02562 * 21 20 19 23 23 C 1.37920 * 119.90786 * 179.97438 * 22 21 20 24 24 C 1.38446 * 120.26774 * 359.97438 * 23 22 21 25 25 C 1.38170 * 120.35857 * 0.02820 * 24 23 22 26 26 C 1.38582 * 120.08633 * 359.69299 * 25 24 23 27 27 O 1.35790 * 120.13607 * 180.28231 * 26 25 24 28 28 C 1.42904 * 117.00242 * 0.27458 * 27 26 25 29 29 O 1.34461 * 126.17908 * 269.97511 * 17 16 14 30 30 H 1.09001 * 109.47394 * 299.99916 * 1 2 3 31 31 H 1.09002 * 109.47360 * 60.00537 * 1 2 3 32 32 H 1.09005 * 109.47329 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47394 * 240.00084 * 2 1 3 34 34 H 1.08996 * 109.47452 * 119.99894 * 2 1 3 35 35 H 0.96997 * 119.99594 * 179.97438 * 8 7 5 36 36 H 0.97004 * 120.00612 * 95.00544 * 13 3 2 37 37 H 1.09002 * 109.46987 * 60.00124 * 16 14 13 38 38 H 1.08994 * 109.46969 * 300.00270 * 16 14 13 39 39 H 1.07993 * 120.04898 * 359.95792 * 22 21 20 40 40 H 1.07995 * 119.86531 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.82165 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.95868 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.47152 * 300.00518 * 28 27 26 44 44 H 1.09005 * 109.46927 * 59.99912 * 28 27 26 45 45 H 1.08997 * 109.47166 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3818 10 1 6.5986 1.5473 -0.1947 11 1 6.4970 -0.5174 -1.4630 12 1 6.3990 1.6168 -2.6102 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3397 2.6320 0.4344 16 6 0.0365 3.3386 2.6544 17 6 -1.3615 3.8859 2.5231 18 7 -2.4649 3.2551 2.8116 19 7 -3.4720 4.0217 2.5802 20 6 -3.0415 5.1784 2.1325 21 6 -3.8766 6.3333 1.7436 22 6 -3.2792 7.5069 1.2815 23 6 -4.0640 8.5816 0.9194 24 6 -5.4431 8.5012 1.0118 25 6 -6.0461 7.3447 1.4679 26 6 -5.2719 6.2539 1.8302 27 8 -5.8638 5.1149 2.2732 28 6 -7.2915 5.1074 2.3352 29 8 -1.6957 5.1132 2.0872 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8292 -0.0611 -2.9498 36 1 2.2719 2.1232 1.9978 37 1 0.7279 4.1541 2.8667 38 1 0.0679 2.6146 3.4685 39 1 -2.2038 7.5735 1.2078 40 1 -3.6010 9.4896 0.5623 41 1 -6.0507 9.3473 0.7267 42 1 -7.1224 7.2892 1.5378 43 1 -7.6300 5.8945 3.0090 44 1 -7.6993 5.2812 1.3394 45 1 -7.6340 4.1409 2.7049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362489509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:40 Heat of formation + Delta-G solvation = -6.887056 kcal Electronic energy + Delta-G solvation = -29486.559682 eV Core-core repulsion = 25278.892641 eV Total energy + Delta-G solvation = -4207.667041 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.94141 -40.44354 -39.13816 -37.72422 -35.94995 -35.20530 -33.42978 -32.50370 -31.71730 -30.76111 -30.52084 -28.30327 -27.58476 -26.77838 -24.35364 -23.43018 -22.83976 -21.95263 -21.87110 -20.41736 -19.41922 -18.63855 -17.67149 -17.33040 -16.80933 -16.58131 -16.12223 -15.97836 -15.65219 -15.31731 -15.15587 -14.93656 -14.53407 -14.30716 -13.99793 -13.75374 -13.25026 -13.08936 -12.78725 -12.67199 -12.49234 -12.18372 -11.99836 -11.80424 -11.66756 -11.44794 -11.44329 -11.35310 -11.27113 -10.98664 -10.86153 -10.78484 -10.37670 -10.31796 -10.18413 -9.63466 -9.24398 -9.06323 -8.98342 -8.53273 -8.33618 -7.91083 -6.14821 -4.24701 0.34880 1.01597 1.61579 2.22492 2.60978 2.93020 3.20999 3.22488 3.30189 3.32343 3.41720 3.69077 4.04298 4.29688 4.35342 4.41808 4.50007 4.73828 4.87355 4.87666 4.90612 5.05749 5.14967 5.16565 5.23691 5.25837 5.34263 5.37865 5.54546 5.55185 5.75904 5.84786 5.96990 6.08114 6.30002 6.41525 6.48054 6.67678 7.02549 7.04904 7.19351 7.32884 7.39521 7.59275 7.68846 7.86583 8.15564 8.48116 8.55207 8.72524 9.01375 9.42397 10.90508 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019059 B = 0.002221 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.801436 B =12602.772239 C =13182.421992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.505 3.495 15 O -0.537 6.537 16 C -0.053 4.053 17 C 0.198 3.802 18 N -0.278 5.278 19 N -0.252 5.252 20 C 0.202 3.798 21 C -0.055 4.055 22 C -0.045 4.045 23 C -0.160 4.160 24 C -0.057 4.057 25 C -0.214 4.214 26 C 0.176 3.824 27 O -0.282 6.282 28 C 0.023 3.977 29 O -0.217 6.217 30 H 0.039 0.961 31 H 0.048 0.952 32 H 0.023 0.977 33 H 0.099 0.901 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.391 0.609 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.138 0.862 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.444 15.707 10.506 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.169 3.831 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.350 5.350 14 C 0.287 3.713 15 O -0.415 6.415 16 C -0.094 4.094 17 C -0.012 4.012 18 N -0.125 5.125 19 N -0.100 5.100 20 C -0.006 4.006 21 C -0.057 4.057 22 C -0.065 4.065 23 C -0.178 4.178 24 C -0.076 4.076 25 C -0.233 4.233 26 C 0.128 3.872 27 O -0.193 6.193 28 C -0.072 4.072 29 O -0.097 6.097 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.043 0.957 33 H 0.118 0.882 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.224 0.776 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.157 0.843 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.156 0.844 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.678 14.394 10.091 24.930 hybrid contribution 1.874 0.940 -0.263 2.113 sum -15.803 15.334 9.828 24.114 Atomic orbital electron populations 1.21837 0.98211 0.98207 1.01247 1.21941 0.92650 0.99650 1.02392 1.18845 0.94311 0.89262 0.80652 0.93245 1.21248 0.90547 1.39124 1.06368 0.91916 1.24899 0.98662 0.94780 0.95389 1.69909 1.35088 1.37511 1.09332 0.86391 0.84776 0.77798 0.78111 1.19720 1.20857 1.20911 1.46426 1.13974 1.55699 1.18901 1.19793 0.83415 0.80066 0.87990 1.90750 1.51153 1.59441 1.40109 1.20289 0.86104 1.02131 1.00926 1.27010 0.98948 0.79406 0.95862 1.74396 0.94546 1.24628 1.18930 1.74871 1.22036 0.98826 1.14229 1.25008 0.78068 0.96635 1.00849 1.16488 0.88033 0.91003 1.10216 1.21163 1.00832 0.90580 0.93886 1.20991 0.93623 0.99197 1.04027 1.21157 0.94882 0.96866 0.94657 1.21189 1.00330 0.93850 1.07937 1.18853 0.90290 0.86270 0.91818 1.86402 1.21721 1.32244 1.78909 1.23174 0.78370 1.04111 1.01545 1.84782 1.24368 1.35050 1.65498 0.94202 0.93310 0.95739 0.88245 0.94873 0.92567 0.77639 0.85962 0.84636 0.84258 0.84812 0.85049 0.84420 0.92565 0.92480 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 37.15 0.32 -2.85 16 2 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 3 C 0.27 6.66 2.24 -69.08 -0.15 6.50 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 5 C -0.53 -13.73 8.73 -34.44 -0.30 -14.03 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.88 -24.50 11.29 55.43 0.63 -23.88 16 9 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 10 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.70 -13.72 5.02 -54.94 -0.28 -14.00 16 14 C 0.50 9.67 6.39 -10.98 -0.07 9.60 16 15 O -0.54 -12.75 13.17 5.56 0.07 -12.67 16 16 C -0.05 -0.73 6.33 -29.03 -0.18 -0.92 16 17 C 0.20 3.38 6.96 -12.91 -0.09 3.29 16 18 N -0.28 -5.28 12.22 32.58 0.40 -4.88 16 19 N -0.25 -4.70 10.76 32.05 0.34 -4.35 16 20 C 0.20 3.37 7.97 -13.91 -0.11 3.25 16 21 C -0.05 -0.73 5.88 -104.86 -0.62 -1.35 16 22 C -0.04 -0.47 9.72 -39.21 -0.38 -0.85 16 23 C -0.16 -1.27 10.03 -39.62 -0.40 -1.67 16 24 C -0.06 -0.40 10.03 -39.53 -0.40 -0.80 16 25 C -0.21 -1.78 9.03 -39.48 -0.36 -2.13 16 26 C 0.18 2.07 6.69 -38.78 -0.26 1.81 16 27 O -0.28 -3.52 8.83 -19.08 -0.17 -3.69 16 28 C 0.02 0.17 9.81 101.05 0.99 1.16 16 29 O -0.22 -3.65 10.67 3.86 0.04 -3.61 16 30 H 0.04 0.90 5.64 -51.93 -0.29 0.60 16 31 H 0.05 1.21 7.85 -51.93 -0.41 0.80 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.39 6.31 8.54 -40.82 -0.35 5.96 16 37 H 0.12 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.14 1.48 8.14 -51.93 -0.42 1.06 16 39 H 0.14 1.34 7.93 -52.49 -0.42 0.93 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 41 H 0.13 0.54 8.06 -52.48 -0.42 0.12 16 42 H 0.14 0.77 6.30 -52.49 -0.33 0.44 16 43 H 0.06 0.30 7.65 -51.93 -0.40 -0.10 16 44 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -35.22 379.89 -6.30 -41.52 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -5.79 Total: 5.14 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -2.25 Total: -0.57 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 1.09 Total: -47.11 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.05 Total: -19.97 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.22 -6.30 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362489509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.631 kcal (2) G-P(sol) polarization free energy of solvation -35.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds