Wall clock time and date at job start Wed Apr 1 2020 03:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.47031 * 2 1 4 4 H 1.08998 * 109.46628 * 304.99919 * 3 2 1 5 5 C 1.50698 * 109.46917 * 184.99819 * 3 2 1 6 6 H 1.07995 * 120.00267 * 239.99349 * 5 3 2 7 7 C 1.37884 * 120.00038 * 60.00327 * 5 3 2 8 8 N 1.31517 * 119.99799 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00085 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46985 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47437 * 119.99829 * 9 7 5 12 12 H 1.48505 * 109.47361 * 240.00207 * 9 7 5 13 13 N 1.46491 * 109.46893 * 65.00079 * 3 2 1 14 14 C 1.34780 * 120.00146 * 274.99740 * 13 3 2 15 15 O 1.21280 * 119.99828 * 0.02562 * 14 13 3 16 16 C 1.50700 * 120.00382 * 180.02562 * 14 13 3 17 17 C 1.50704 * 109.47095 * 180.02562 * 16 14 13 18 18 N 1.30334 * 126.18035 * 89.97986 * 17 16 14 19 19 N 1.28662 * 109.54429 * 179.97438 * 18 17 16 20 20 C 1.31294 * 109.24486 * 359.97438 * 19 18 17 21 21 C 1.47726 * 126.38636 * 179.73792 * 20 19 18 22 22 C 1.39559 * 120.17378 * 180.02562 * 21 20 19 23 23 C 1.37920 * 119.90786 * 179.97438 * 22 21 20 24 24 C 1.38446 * 120.26774 * 359.97438 * 23 22 21 25 25 C 1.38170 * 120.35857 * 0.02820 * 24 23 22 26 26 C 1.38582 * 120.08633 * 359.69299 * 25 24 23 27 27 O 1.35790 * 120.13607 * 180.28231 * 26 25 24 28 28 C 1.42904 * 117.00242 * 0.27458 * 27 26 25 29 29 O 1.34461 * 126.17908 * 269.97511 * 17 16 14 30 30 H 1.09001 * 109.47394 * 299.99916 * 1 2 3 31 31 H 1.09002 * 109.47360 * 60.00537 * 1 2 3 32 32 H 1.09005 * 109.47329 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47394 * 240.00084 * 2 1 3 34 34 H 1.08996 * 109.47452 * 119.99894 * 2 1 3 35 35 H 0.96997 * 119.99594 * 179.97438 * 8 7 5 36 36 H 0.97004 * 120.00612 * 95.00544 * 13 3 2 37 37 H 1.09002 * 109.46987 * 60.00124 * 16 14 13 38 38 H 1.08994 * 109.46969 * 300.00270 * 16 14 13 39 39 H 1.07993 * 120.04898 * 359.95792 * 22 21 20 40 40 H 1.07995 * 119.86531 * 179.97438 * 23 22 21 41 41 H 1.08006 * 119.82165 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.95868 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.47152 * 300.00518 * 28 27 26 44 44 H 1.09005 * 109.46927 * 59.99912 * 28 27 26 45 45 H 1.08997 * 109.47166 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5418 1.4444 -0.1238 6 1 4.1471 1.8890 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 3.4061 0.3367 -2.1729 9 14 6.0049 0.8813 -1.3818 10 1 6.5986 1.5473 -0.1947 11 1 6.4970 -0.5174 -1.4630 12 1 6.3990 1.6168 -2.6102 13 7 1.6524 2.0975 1.2518 14 6 0.4350 2.6644 1.3669 15 8 -0.3397 2.6320 0.4344 16 6 0.0365 3.3386 2.6544 17 6 -1.3615 3.8859 2.5231 18 7 -2.4649 3.2551 2.8116 19 7 -3.4720 4.0217 2.5802 20 6 -3.0415 5.1784 2.1325 21 6 -3.8766 6.3333 1.7436 22 6 -3.2792 7.5069 1.2815 23 6 -4.0640 8.5816 0.9194 24 6 -5.4431 8.5012 1.0118 25 6 -6.0461 7.3447 1.4679 26 6 -5.2719 6.2539 1.8302 27 8 -5.8638 5.1149 2.2732 28 6 -7.2915 5.1074 2.3352 29 8 -1.6957 5.1132 2.0872 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.8292 -0.0611 -2.9498 36 1 2.2719 2.1232 1.9978 37 1 0.7279 4.1541 2.8667 38 1 0.0679 2.6146 3.4685 39 1 -2.2038 7.5735 1.2078 40 1 -3.6010 9.4896 0.5623 41 1 -6.0507 9.3473 0.7267 42 1 -7.1224 7.2892 1.5378 43 1 -7.6300 5.8945 3.0090 44 1 -7.6993 5.2812 1.3394 45 1 -7.6340 4.1409 2.7049 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362489509.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:39 Heat of formation + Delta-G solvation = -35.066748 kcal Electronic energy + Delta-G solvation = -29487.781645 eV Core-core repulsion = 25278.892641 eV Total energy + Delta-G solvation = -4208.889004 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.19993 -41.18747 -40.77133 -38.45753 -37.23226 -37.04991 -34.60160 -34.29862 -33.12684 -32.19228 -31.28189 -29.63324 -28.57198 -28.19890 -25.43533 -25.11377 -24.20561 -22.93820 -22.77674 -22.08999 -21.19918 -19.47615 -19.18548 -18.43697 -18.22958 -17.55321 -17.41482 -17.19567 -16.79606 -16.67659 -16.55122 -16.17422 -15.69072 -15.38057 -15.09394 -14.77203 -14.61914 -14.52743 -14.25973 -13.85758 -13.60980 -13.49495 -13.19168 -13.16453 -13.09365 -12.92023 -12.86265 -12.70358 -12.61665 -12.16440 -12.09007 -12.07097 -12.06060 -11.97509 -11.60505 -11.43889 -11.04405 -10.80936 -10.53524 -9.84645 -9.69389 -9.20341 -8.15362 -6.32717 -0.58671 0.31719 0.52993 1.07648 1.39356 1.45618 1.47130 1.58619 1.71522 2.25833 2.34197 2.52849 2.67386 2.75496 3.14753 3.26414 3.61627 3.82820 3.85776 4.01591 4.13814 4.18748 4.29288 4.37898 4.38288 4.39829 4.43825 4.44592 4.47452 4.54425 4.58328 4.73768 4.75023 4.81618 5.05080 5.13958 5.23777 5.29274 5.40587 5.41399 5.53604 5.61209 5.68508 5.78133 5.90722 6.16021 6.34116 6.75812 6.89638 7.20116 7.33606 7.52472 8.90399 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019059 B = 0.002221 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.801436 B =12602.772239 C =13182.421992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.004 1.004 5 C -0.543 4.543 6 H 0.078 0.922 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.971 3.029 10 H -0.257 1.257 11 H -0.281 1.281 12 H -0.287 1.287 13 N -0.694 5.694 14 C 0.503 3.497 15 O -0.589 6.589 16 C -0.038 4.038 17 C 0.187 3.813 18 N -0.307 5.307 19 N -0.290 5.290 20 C 0.210 3.790 21 C -0.101 4.101 22 C -0.053 4.053 23 C -0.156 4.156 24 C -0.041 4.041 25 C -0.211 4.211 26 C 0.162 3.838 27 O -0.319 6.319 28 C 0.014 3.986 29 O -0.224 6.224 30 H 0.042 0.958 31 H 0.019 0.981 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.264 0.736 36 H 0.412 0.588 37 H 0.167 0.833 38 H 0.172 0.828 39 H 0.139 0.861 40 H 0.164 0.836 41 H 0.173 0.827 42 H 0.167 0.833 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.476 18.170 11.867 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.014 0.986 5 C -0.581 4.581 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.796 3.204 10 H -0.180 1.180 11 H -0.207 1.207 12 H -0.213 1.213 13 N -0.344 5.344 14 C 0.288 3.712 15 O -0.470 6.470 16 C -0.078 4.078 17 C -0.024 4.024 18 N -0.153 5.153 19 N -0.137 5.137 20 C 0.002 3.998 21 C -0.104 4.104 22 C -0.073 4.073 23 C -0.174 4.174 24 C -0.059 4.059 25 C -0.229 4.229 26 C 0.113 3.887 27 O -0.231 6.231 28 C -0.080 4.080 29 O -0.104 6.104 30 H 0.061 0.939 31 H 0.038 0.962 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.248 0.752 37 H 0.185 0.815 38 H 0.190 0.810 39 H 0.157 0.843 40 H 0.182 0.818 41 H 0.191 0.809 42 H 0.185 0.815 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.714 16.863 11.514 27.032 hybrid contribution 1.717 0.312 -0.743 1.897 sum -15.997 17.174 10.771 25.824 Atomic orbital electron populations 1.21671 0.97456 0.98957 0.99941 1.21793 0.93162 0.99389 1.01574 1.18390 0.93846 0.89019 0.81230 0.98569 1.21612 0.91118 1.38678 1.06713 0.90351 1.25806 1.03344 0.94460 0.95111 1.70073 1.37065 1.38528 1.09956 0.85305 0.79091 0.77716 0.78256 1.18023 1.20697 1.21299 1.46099 1.14860 1.55452 1.17958 1.20592 0.82326 0.79103 0.89186 1.90740 1.52519 1.61156 1.42559 1.20398 0.85214 1.03886 0.98299 1.27529 0.99664 0.79484 0.95709 1.74281 0.95363 1.25597 1.20100 1.74795 1.22363 0.99897 1.16613 1.25789 0.78130 0.97025 0.98840 1.16905 0.88785 0.91162 1.13566 1.21329 1.01302 0.90613 0.94062 1.21396 0.94121 0.99159 1.02712 1.21701 0.94889 0.97338 0.91958 1.21574 1.01593 0.92971 1.06807 1.19162 0.90071 0.87168 0.92265 1.86349 1.24254 1.33270 1.79193 1.23442 0.76195 1.05251 1.03068 1.84782 1.24691 1.35164 1.65784 0.93866 0.96209 0.93805 0.91062 0.93461 0.92703 0.75226 0.81499 0.81046 0.84320 0.81799 0.80919 0.81516 0.90347 0.90970 0.87474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.51 71.98 0.61 -5.21 16 2 C -0.12 -5.95 5.45 30.59 0.17 -5.79 16 3 C 0.28 14.01 2.24 44.25 0.10 14.11 16 4 H 0.00 -0.22 7.58 -2.39 -0.02 -0.24 16 5 C -0.54 -27.82 8.73 25.60 0.22 -27.60 16 6 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 7 C 0.01 0.67 5.29 84.66 0.45 1.12 16 8 N -0.92 -52.51 11.29 21.45 0.24 -52.27 16 9 Si 0.97 41.41 29.54 68.60 2.03 43.44 16 10 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 12 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.69 -26.78 5.02 -446.10 -2.24 -29.02 16 14 C 0.50 19.22 6.39 87.66 0.56 19.78 16 15 O -0.59 -29.08 13.17 -3.03 -0.04 -29.12 16 16 C -0.04 -0.98 6.33 29.10 0.18 -0.80 16 17 C 0.19 6.47 6.96 88.33 0.62 7.08 16 18 N -0.31 -12.10 12.22 -165.32 -2.02 -14.12 16 19 N -0.29 -11.41 10.76 -166.32 -1.79 -13.20 16 20 C 0.21 7.34 7.97 87.28 0.70 8.04 16 21 C -0.10 -2.78 5.88 -20.02 -0.12 -2.90 16 22 C -0.05 -1.10 9.72 22.51 0.22 -0.88 16 23 C -0.16 -2.03 10.03 22.24 0.22 -1.81 16 24 C -0.04 -0.42 10.03 22.30 0.22 -0.19 16 25 C -0.21 -2.96 9.03 22.34 0.20 -2.75 16 26 C 0.16 3.78 6.69 22.79 0.15 3.93 16 27 O -0.32 -8.17 8.83 -91.19 -0.81 -8.97 16 28 C 0.01 0.20 9.81 113.37 1.11 1.31 16 29 O -0.22 -7.76 10.67 -9.11 -0.10 -7.86 16 30 H 0.04 1.99 5.64 -2.39 -0.01 1.97 16 31 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 32 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.07 3.97 5.95 -2.39 -0.01 3.95 16 34 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.41 12.42 8.54 -92.71 -0.79 11.62 16 37 H 0.17 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.17 3.25 8.14 -2.39 -0.02 3.24 16 39 H 0.14 2.70 7.93 -2.91 -0.02 2.68 16 40 H 0.16 1.12 8.06 -2.91 -0.02 1.09 16 41 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 42 H 0.17 1.26 6.30 -2.91 -0.02 1.24 16 43 H 0.08 0.69 7.65 -2.39 -0.02 0.67 16 44 H 0.07 0.74 7.68 -2.38 -0.02 0.72 16 45 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -83.37 379.89 1.15 -82.22 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.25 Total: 21.44 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 5.62 Total: 7.45 kcal Atomic # 7 Polarization: -102.80 SS G_CDS: -5.81 Total: -108.60 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.94 Total: -45.95 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -83.37 1.15 -82.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362489509.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.152 kcal (2) G-P(sol) polarization free energy of solvation -83.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds