Wall clock time and date at job start Wed Apr 1 2020 03:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47057 * 2 1 4 4 C 1.50695 * 109.47615 * 239.99979 * 2 1 3 5 5 H 1.08002 * 120.00199 * 240.00362 * 4 2 1 6 6 C 1.37877 * 120.00246 * 59.99486 * 4 2 1 7 7 N 1.31525 * 119.99720 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00234 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46999 * 60.00506 * 8 6 4 10 10 H 1.48507 * 109.47091 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47249 * 300.00275 * 8 6 4 12 12 C 1.53000 * 109.47047 * 119.99753 * 2 1 3 13 13 N 1.46506 * 109.47135 * 299.99996 * 12 2 1 14 14 C 1.34773 * 119.99529 * 179.97438 * 13 12 2 15 15 O 1.21519 * 120.00697 * 0.02562 * 14 13 12 16 16 C 1.48063 * 119.99621 * 180.02562 * 14 13 12 17 17 C 1.39729 * 120.08386 * 0.02562 * 16 14 13 18 18 C 1.37293 * 119.89812 * 180.09260 * 17 16 14 19 19 C 1.40517 * 120.74664 * 359.97438 * 18 17 16 20 20 C 1.39397 * 119.52501 * 359.80201 * 19 18 17 21 21 C 1.38887 * 120.08633 * 179.97438 * 16 14 13 22 22 N 1.38435 * 123.42891 * 180.38071 * 20 19 18 23 23 C 1.32953 * 125.66410 * 318.96450 * 22 20 19 24 24 O 1.21272 * 119.03872 * 182.53439 * 23 22 20 25 25 C 1.50462 * 121.92494 * 2.53528 * 23 22 20 26 26 N 1.46294 * 108.81576 * 63.64615 * 25 23 22 27 27 C 1.33163 * 121.51333 * 297.02443 * 26 25 23 28 28 O 1.21569 * 117.73744 * 179.25181 * 27 26 25 29 29 H 1.08999 * 109.47275 * 300.00287 * 1 2 3 30 30 H 1.09004 * 109.46991 * 60.00304 * 1 2 3 31 31 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47239 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46972 * 299.99708 * 3 2 1 34 34 H 1.08999 * 109.47313 * 59.99736 * 3 2 1 35 35 H 0.96996 * 119.99588 * 179.97438 * 7 6 4 36 36 H 1.09008 * 109.47030 * 180.02562 * 12 2 1 37 37 H 1.09001 * 109.47498 * 60.00712 * 12 2 1 38 38 H 0.96994 * 119.99999 * 0.02562 * 13 12 2 39 39 H 1.07996 * 120.04895 * 0.11566 * 17 16 14 40 40 H 1.08003 * 119.62630 * 179.97438 * 18 17 16 41 41 H 1.08008 * 119.71604 * 0.03091 * 21 16 14 42 42 H 0.96999 * 117.16744 * 138.68930 * 22 20 19 43 43 H 1.08992 * 109.58843 * 303.84504 * 25 23 22 44 44 H 1.09001 * 109.69247 * 183.50599 * 25 23 22 45 45 H 0.97007 * 119.23900 * 117.04114 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8768 -0.4913 3.6695 15 8 2.5754 -1.4793 3.7811 16 6 1.3828 0.2064 4.8784 17 6 0.5789 1.3423 4.7522 18 6 0.1245 1.9874 5.8758 19 6 0.4579 1.5184 7.1577 20 6 1.2558 0.3828 7.2877 21 6 1.7163 -0.2672 6.1408 22 7 1.6265 -0.1530 8.5092 23 6 1.9995 0.5420 9.5794 24 8 2.3451 -0.0541 10.5774 25 6 2.0052 2.0466 9.5887 26 7 0.6332 2.5247 9.4181 27 6 -0.0598 2.2704 8.3098 28 8 -1.1994 2.6889 8.2466 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 0.7095 1.1616 -3.4844 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 0.9937 0.7579 2.3564 39 1 0.3152 1.7120 3.7724 40 1 -0.4962 2.8652 5.7731 41 1 2.3375 -1.1455 6.2362 42 1 1.6091 -1.1193 8.5926 43 1 2.6245 2.4147 8.7709 44 1 2.4020 2.4065 10.5380 45 1 0.2188 3.0390 10.1287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362535387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:48 Heat of formation + Delta-G solvation = -71.948739 kcal Electronic energy + Delta-G solvation = -29648.456139 eV Core-core repulsion = 25437.967811 eV Total energy + Delta-G solvation = -4210.488327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.87348 -40.03101 -39.67386 -38.38788 -36.48277 -36.01642 -35.26617 -33.48603 -31.83391 -30.97355 -30.19459 -28.31167 -26.41899 -25.80984 -25.46922 -24.64974 -23.15209 -21.96059 -21.32232 -20.28747 -18.98661 -18.54262 -18.29493 -17.62379 -17.30901 -16.86224 -16.35367 -15.89616 -15.46572 -15.20383 -15.04779 -14.98467 -14.70809 -14.68156 -14.09533 -13.90316 -13.58837 -13.48793 -13.09434 -12.99017 -12.91275 -12.67656 -12.29551 -11.90167 -11.47999 -11.28680 -11.25748 -11.00799 -10.90546 -10.78537 -10.61909 -10.46848 -10.27249 -9.89389 -9.75074 -9.72352 -9.47158 -9.39121 -8.88745 -8.87633 -8.59098 -8.41096 -6.08052 -4.18464 0.08462 0.69400 1.72490 2.01948 2.40425 2.59063 2.87181 3.26456 3.31219 3.32641 3.40604 3.55534 3.64655 3.88628 4.25368 4.34131 4.34907 4.66373 4.67292 4.69868 4.81096 4.97212 5.18946 5.38186 5.44544 5.71348 5.86584 5.95383 6.06576 6.09892 6.17971 6.21289 6.41076 6.50553 6.62318 6.64030 6.72608 6.82068 6.85978 6.92907 7.26342 7.31837 7.47524 7.53124 7.62870 7.82857 7.93448 8.05889 8.29739 8.43260 8.81729 9.47779 10.93386 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.002166 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.330660 B =12924.682856 C =13694.268329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.130 3.870 13 N -0.704 5.704 14 C 0.543 3.457 15 O -0.541 6.541 16 C -0.072 4.072 17 C -0.102 4.102 18 C -0.047 4.047 19 C -0.134 4.134 20 C 0.170 3.830 21 C -0.092 4.092 22 N -0.656 5.656 23 C 0.508 3.492 24 O -0.520 6.520 25 C 0.092 3.908 26 N -0.708 5.708 27 C 0.563 3.437 28 O -0.528 6.528 29 H 0.006 0.994 30 H 0.087 0.913 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.087 0.913 34 H 0.005 0.995 35 H 0.261 0.739 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.399 0.601 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.150 0.850 42 H 0.414 0.586 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.022 5.851 21.060 21.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 C -0.190 4.190 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.008 3.992 13 N -0.354 5.354 14 C 0.328 3.672 15 O -0.420 6.420 16 C -0.076 4.076 17 C -0.122 4.122 18 C -0.066 4.066 19 C -0.140 4.140 20 C 0.074 3.926 21 C -0.113 4.113 22 N -0.301 5.301 23 C 0.293 3.707 24 O -0.394 6.394 25 C -0.036 4.036 26 N -0.364 5.364 27 C 0.350 3.650 28 O -0.405 6.405 29 H 0.025 0.975 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.236 0.764 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.168 0.832 42 H 0.253 0.747 43 H 0.122 0.878 44 H 0.150 0.850 45 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 0.104 5.283 21.348 21.992 hybrid contribution -0.039 -0.347 -0.658 0.745 sum 0.065 4.937 20.690 21.271 Atomic orbital electron populations 1.21854 0.97684 0.99334 1.00151 1.18362 0.92843 0.92780 0.90460 1.21854 0.98700 0.98294 1.00138 1.20920 1.31705 1.12201 0.89819 0.92432 1.24876 0.94794 0.94905 0.98874 1.69786 1.36506 1.22660 1.23442 0.86621 0.79238 0.79803 0.82131 1.20259 1.21310 1.20269 1.21840 0.98410 0.95957 0.83006 1.46290 1.51774 1.31549 1.05835 1.18174 0.81223 0.84431 0.83394 1.90762 1.38317 1.26142 1.86757 1.20153 0.97762 0.95696 0.93987 1.21347 0.96731 0.94439 0.99641 1.21189 0.96528 0.99579 0.89330 1.19467 1.01350 0.98527 0.94643 1.17239 0.94974 0.95346 0.85008 1.21298 0.99089 1.01328 0.89536 1.42925 1.64885 1.12098 1.10217 1.20779 0.76401 0.91266 0.82210 1.90843 1.45877 1.71148 1.31523 1.21761 0.85155 0.89662 1.07019 1.45408 1.14721 1.56613 1.19612 1.17760 0.85608 0.79554 0.82101 1.90889 1.17575 1.51296 1.80694 0.97546 0.89460 0.95299 0.95315 0.89454 0.97574 0.92872 0.92269 0.92269 0.76423 0.83909 0.83593 0.83193 0.74707 0.87813 0.85027 0.74623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 2 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 3 C -0.13 -2.78 8.08 37.16 0.30 -2.48 16 4 C -0.51 -12.73 8.01 -34.44 -0.28 -13.00 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.70 5.15 -17.81 -0.09 1.61 16 7 N -0.89 -22.77 9.35 55.43 0.52 -22.25 16 8 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 12 C 0.13 2.55 4.50 -4.04 -0.02 2.53 16 13 N -0.70 -11.25 4.91 -61.17 -0.30 -11.55 16 14 C 0.54 8.42 7.78 -12.23 -0.10 8.32 16 15 O -0.54 -10.17 16.32 5.35 0.09 -10.08 16 16 C -0.07 -0.84 5.86 -105.07 -0.62 -1.45 16 17 C -0.10 -0.99 9.52 -39.37 -0.37 -1.36 16 18 C -0.05 -0.43 9.41 -39.07 -0.37 -0.79 16 19 C -0.13 -1.25 5.49 -105.06 -0.58 -1.83 16 20 C 0.17 1.51 6.16 -83.92 -0.52 0.99 16 21 C -0.09 -0.93 9.35 -38.82 -0.36 -1.29 16 22 N -0.66 -5.19 4.89 -10.39 -0.05 -5.24 16 23 C 0.51 4.18 7.41 -11.91 -0.09 4.09 16 24 O -0.52 -5.93 17.80 5.56 0.10 -5.83 16 25 C 0.09 0.46 6.48 -5.42 -0.04 0.43 16 26 N -0.71 -4.54 5.29 -63.39 -0.34 -4.87 16 27 C 0.56 5.42 7.22 -13.42 -0.10 5.32 16 28 O -0.53 -6.86 17.28 5.31 0.09 -6.76 16 29 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 30 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16 34 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 35 H 0.26 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.40 5.61 4.20 -40.82 -0.17 5.44 16 39 H 0.14 1.20 6.40 -52.49 -0.34 0.87 16 40 H 0.15 1.17 7.86 -52.48 -0.41 0.76 16 41 H 0.15 1.51 7.62 -52.48 -0.40 1.11 16 42 H 0.41 2.91 8.68 -40.82 -0.35 2.56 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.13 0.34 8.11 -51.93 -0.42 -0.08 16 45 H 0.42 2.00 8.85 -40.82 -0.36 1.63 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -31.72 370.05 -7.78 -39.51 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -5.45 Total: 6.69 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -2.99 Total: -0.29 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.17 Total: -43.92 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.28 Total: -22.67 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.72 -7.78 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362535387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.442 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds