Wall clock time and date at job start Wed Apr 1 2020 03:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47057 * 2 1 4 4 C 1.50695 * 109.47615 * 239.99979 * 2 1 3 5 5 H 1.08002 * 120.00199 * 240.00362 * 4 2 1 6 6 C 1.37877 * 120.00246 * 59.99486 * 4 2 1 7 7 N 1.31525 * 119.99720 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00234 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46999 * 60.00506 * 8 6 4 10 10 H 1.48507 * 109.47091 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47249 * 300.00275 * 8 6 4 12 12 C 1.53000 * 109.47047 * 119.99753 * 2 1 3 13 13 N 1.46506 * 109.47135 * 299.99996 * 12 2 1 14 14 C 1.34773 * 119.99529 * 179.97438 * 13 12 2 15 15 O 1.21519 * 120.00697 * 0.02562 * 14 13 12 16 16 C 1.48063 * 119.99621 * 180.02562 * 14 13 12 17 17 C 1.39729 * 120.08386 * 0.02562 * 16 14 13 18 18 C 1.37293 * 119.89812 * 180.09260 * 17 16 14 19 19 C 1.40517 * 120.74664 * 359.97438 * 18 17 16 20 20 C 1.39397 * 119.52501 * 359.80201 * 19 18 17 21 21 C 1.38887 * 120.08633 * 179.97438 * 16 14 13 22 22 N 1.38435 * 123.42891 * 180.38071 * 20 19 18 23 23 C 1.32953 * 125.66410 * 318.96450 * 22 20 19 24 24 O 1.21272 * 119.03872 * 182.53439 * 23 22 20 25 25 C 1.50462 * 121.92494 * 2.53528 * 23 22 20 26 26 N 1.46294 * 108.81576 * 63.64615 * 25 23 22 27 27 C 1.33163 * 121.51333 * 297.02443 * 26 25 23 28 28 O 1.21569 * 117.73744 * 179.25181 * 27 26 25 29 29 H 1.08999 * 109.47275 * 300.00287 * 1 2 3 30 30 H 1.09004 * 109.46991 * 60.00304 * 1 2 3 31 31 H 1.09001 * 109.47067 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.47239 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.46972 * 299.99708 * 3 2 1 34 34 H 1.08999 * 109.47313 * 59.99736 * 3 2 1 35 35 H 0.96996 * 119.99588 * 179.97438 * 7 6 4 36 36 H 1.09008 * 109.47030 * 180.02562 * 12 2 1 37 37 H 1.09001 * 109.47498 * 60.00712 * 12 2 1 38 38 H 0.96994 * 119.99999 * 0.02562 * 13 12 2 39 39 H 1.07996 * 120.04895 * 0.11566 * 17 16 14 40 40 H 1.08003 * 119.62630 * 179.97438 * 18 17 16 41 41 H 1.08008 * 119.71604 * 0.03091 * 21 16 14 42 42 H 0.96999 * 117.16744 * 138.68930 * 22 20 19 43 43 H 1.08992 * 109.58843 * 303.84504 * 25 23 22 44 44 H 1.09001 * 109.69247 * 183.50599 * 25 23 22 45 45 H 0.97007 * 119.23900 * 117.04114 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3216 -1.1204 -4.0078 9 1 1.8260 -2.5203 -4.0076 10 1 1.8271 -0.4200 -5.2204 11 1 3.8065 -1.1209 -4.0080 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8768 -0.4913 3.6695 15 8 2.5754 -1.4793 3.7811 16 6 1.3828 0.2064 4.8784 17 6 0.5789 1.3423 4.7522 18 6 0.1245 1.9874 5.8758 19 6 0.4579 1.5184 7.1577 20 6 1.2558 0.3828 7.2877 21 6 1.7163 -0.2672 6.1408 22 7 1.6265 -0.1530 8.5092 23 6 1.9995 0.5420 9.5794 24 8 2.3451 -0.0541 10.5774 25 6 2.0052 2.0466 9.5887 26 7 0.6332 2.5247 9.4181 27 6 -0.0598 2.2704 8.3098 28 8 -1.1994 2.6889 8.2466 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 0.7095 1.1616 -3.4844 36 1 3.1300 -0.7208 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 0.9937 0.7579 2.3564 39 1 0.3152 1.7120 3.7724 40 1 -0.4962 2.8652 5.7731 41 1 2.3375 -1.1455 6.2362 42 1 1.6091 -1.1193 8.5926 43 1 2.6245 2.4147 8.7709 44 1 2.4020 2.4065 10.5380 45 1 0.2188 3.0390 10.1287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362535387.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:47 Heat of formation + Delta-G solvation = -94.995414 kcal Electronic energy + Delta-G solvation = -29649.455518 eV Core-core repulsion = 25437.967811 eV Total energy + Delta-G solvation = -4211.487706 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.58820 -41.12558 -40.45762 -39.35371 -38.08139 -36.76565 -35.95824 -35.04496 -33.00482 -32.33699 -31.03962 -28.87253 -27.70493 -27.52604 -27.18106 -25.87600 -23.95913 -22.92573 -22.00934 -21.26903 -20.61903 -19.53204 -18.99266 -18.30301 -18.11543 -17.77880 -17.62816 -17.19986 -16.64859 -16.44306 -16.31302 -16.02386 -15.81639 -15.46465 -15.02673 -14.83791 -14.78470 -14.65945 -14.50270 -13.97684 -13.97335 -13.72613 -13.47044 -13.16712 -13.07987 -12.68836 -12.65504 -12.61494 -12.22472 -12.11758 -12.00976 -11.76236 -11.45608 -11.43827 -11.30809 -11.00224 -10.68160 -10.41782 -10.37715 -10.30551 -9.95137 -9.60753 -8.00376 -6.15583 -0.74466 -0.05285 1.07740 1.22148 1.45497 1.47474 1.53117 1.68770 1.82569 2.10436 2.19872 2.49370 2.60186 3.04770 3.20521 3.23680 3.59748 3.62768 3.87677 3.95978 4.01533 4.16470 4.40410 4.44437 4.53698 4.65531 4.67719 4.75495 4.95613 5.02672 5.07997 5.08742 5.12991 5.22960 5.28896 5.34207 5.40998 5.56221 5.57488 5.70190 5.70854 5.87606 5.95897 6.19308 6.24407 6.45925 6.57004 6.67025 6.87603 6.88547 7.17816 7.52130 8.98136 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024898 B = 0.002166 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.330660 B =12924.682856 C =13694.268329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.528 4.528 5 H 0.045 0.955 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.146 3.854 13 N -0.699 5.699 14 C 0.546 3.454 15 O -0.579 6.579 16 C -0.085 4.085 17 C -0.093 4.093 18 C -0.042 4.042 19 C -0.132 4.132 20 C 0.182 3.818 21 C -0.088 4.088 22 N -0.654 5.654 23 C 0.506 3.494 24 O -0.553 6.553 25 C 0.094 3.906 26 N -0.694 5.694 27 C 0.563 3.437 28 O -0.566 6.566 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.018 0.982 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.260 0.740 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.410 0.590 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.147 0.853 42 H 0.417 0.583 43 H 0.124 0.876 44 H 0.161 0.839 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.195 7.240 22.629 23.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.051 3.949 3 C -0.181 4.181 4 C -0.567 4.567 5 H 0.063 0.937 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.203 1.203 12 C 0.023 3.977 13 N -0.350 5.350 14 C 0.333 3.667 15 O -0.460 6.460 16 C -0.089 4.089 17 C -0.112 4.112 18 C -0.061 4.061 19 C -0.138 4.138 20 C 0.086 3.914 21 C -0.109 4.109 22 N -0.299 5.299 23 C 0.294 3.706 24 O -0.429 6.429 25 C -0.033 4.033 26 N -0.348 5.348 27 C 0.350 3.650 28 O -0.445 6.445 29 H 0.059 0.941 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.249 0.751 39 H 0.176 0.824 40 H 0.178 0.822 41 H 0.165 0.835 42 H 0.256 0.744 43 H 0.142 0.858 44 H 0.179 0.821 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -0.063 6.698 22.942 23.900 hybrid contribution 0.033 -0.798 -1.052 1.321 sum -0.029 5.900 21.890 22.671 Atomic orbital electron populations 1.21707 0.97097 0.98793 1.00588 1.18354 0.93255 0.93118 0.90184 1.21701 0.98072 0.97740 1.00605 1.21248 1.31702 1.12195 0.91553 0.93664 1.25416 0.95188 0.95590 1.00860 1.69894 1.36938 1.23208 1.23619 0.85870 0.78630 0.78821 0.79787 1.20378 1.21002 1.20295 1.21365 0.97397 0.95230 0.83756 1.46056 1.52090 1.31777 1.05109 1.18656 0.80151 0.83840 0.84018 1.90744 1.40012 1.27940 1.87320 1.19799 0.99700 0.96835 0.92517 1.21430 0.95739 0.93404 1.00629 1.21325 0.96168 0.99776 0.88858 1.19586 1.00801 0.98378 0.94989 1.17042 0.94639 0.94956 0.84813 1.21259 0.98899 1.01237 0.89508 1.42973 1.64451 1.12489 1.09989 1.21353 0.75326 0.92513 0.81432 1.90836 1.47375 1.72107 1.32620 1.22007 0.84478 0.87231 1.09575 1.45332 1.15137 1.55516 1.18808 1.17812 0.85243 0.79262 0.82698 1.90883 1.19127 1.52985 1.81531 0.94125 0.91896 0.96285 0.96167 0.91911 0.94072 0.93060 0.93715 0.93865 0.75095 0.82438 0.82212 0.83481 0.74412 0.85806 0.82086 0.73467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.08 71.98 0.58 -4.58 16 2 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 3 C -0.12 -5.09 8.08 71.98 0.58 -4.51 16 4 C -0.53 -26.80 8.01 25.60 0.21 -26.60 16 5 H 0.05 2.34 7.74 -2.91 -0.02 2.32 16 6 C 0.03 1.50 5.15 84.65 0.44 1.93 16 7 N -0.90 -46.35 9.35 21.45 0.20 -46.15 16 8 Si 0.94 41.50 29.54 68.60 2.03 43.52 16 9 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 12 C 0.15 5.73 4.50 86.38 0.39 6.12 16 13 N -0.70 -21.45 4.91 -465.75 -2.29 -23.73 16 14 C 0.55 16.45 7.78 86.85 0.68 17.12 16 15 O -0.58 -21.83 16.32 -3.78 -0.06 -21.89 16 16 C -0.08 -1.82 5.86 -20.15 -0.12 -1.94 16 17 C -0.09 -1.54 9.52 22.41 0.21 -1.33 16 18 C -0.04 -0.64 9.41 22.60 0.21 -0.43 16 19 C -0.13 -2.12 5.49 -20.15 -0.11 -2.23 16 20 C 0.18 2.84 6.16 38.72 0.24 3.08 16 21 C -0.09 -1.66 9.35 22.77 0.21 -1.45 16 22 N -0.65 -9.24 4.89 -306.18 -1.50 -10.74 16 23 C 0.51 7.27 7.41 87.86 0.65 7.93 16 24 O -0.55 -11.81 17.80 -3.01 -0.05 -11.86 16 25 C 0.09 0.64 6.48 85.60 0.55 1.19 16 26 N -0.69 -6.91 5.29 -473.64 -2.51 -9.42 16 27 C 0.56 9.48 7.22 86.79 0.63 10.11 16 28 O -0.57 -13.64 17.28 -3.93 -0.07 -13.71 16 29 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 30 H 0.06 2.96 6.07 -2.38 -0.01 2.94 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.06 2.93 6.07 -2.38 -0.01 2.92 16 34 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 35 H 0.26 13.02 8.31 -92.71 -0.77 12.25 16 36 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.41 10.51 4.20 -92.71 -0.39 10.12 16 39 H 0.16 2.11 6.40 -2.91 -0.02 2.09 16 40 H 0.16 2.06 7.86 -2.91 -0.02 2.04 16 41 H 0.15 2.87 7.62 -2.91 -0.02 2.84 16 42 H 0.42 5.41 8.68 -92.71 -0.80 4.60 16 43 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.16 0.22 8.11 -2.39 -0.02 0.20 16 45 H 0.43 2.90 8.85 -92.70 -0.82 2.08 16 Total: -1.00 -69.32 370.05 0.15 -69.18 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -0.93 Total: 18.19 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 5.32 Total: 6.62 kcal Atomic # 7 Polarization: -83.95 SS G_CDS: -6.09 Total: -90.04 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -0.18 Total: -47.46 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -69.32 0.15 -69.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362535387.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.820 kcal (2) G-P(sol) polarization free energy of solvation -69.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds