Wall clock time and date at job start Wed Apr 1 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47385 * 2 1 4 4 C 1.52999 * 109.47370 * 240.00102 * 2 1 3 5 5 C 1.53005 * 109.46927 * 120.00014 * 2 1 3 6 6 H 1.08995 * 109.46892 * 299.99752 * 5 2 1 7 7 N 1.46498 * 109.47171 * 60.00382 * 5 2 1 8 8 C 1.34774 * 119.99669 * 274.99956 * 7 5 2 9 9 O 1.21550 * 120.00221 * 359.97438 * 8 7 5 10 10 C 1.47886 * 120.00168 * 180.27493 * 8 7 5 11 11 C 1.39920 * 120.02326 * 359.44637 * 10 8 7 12 12 C 1.38327 * 120.36048 * 179.71545 * 11 10 8 13 13 C 1.37753 * 120.40898 * 0.56504 * 12 11 10 14 14 C 1.40746 * 120.04035 * 359.71592 * 13 12 11 15 15 C 1.41437 * 120.17923 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99845 * 334.92899 * 15 14 13 17 17 C 1.39936 * 120.00340 * 154.93332 * 15 14 13 18 18 N 1.30823 * 119.99598 * 342.58086 * 17 15 14 19 19 Si 1.86795 * 120.00306 * 162.58558 * 17 15 14 20 20 H 1.48494 * 109.47345 * 89.99634 * 19 17 15 21 21 H 1.48501 * 109.47433 * 209.99919 * 19 17 15 22 22 H 1.48504 * 109.47118 * 329.99571 * 19 17 15 23 23 C 1.38993 * 120.02928 * 179.72332 * 10 8 7 24 24 C 1.50701 * 109.46862 * 179.97438 * 5 2 1 25 25 N 1.31701 * 126.18592 * 305.03041 * 24 5 2 26 26 C 1.34346 * 105.81926 * 180.02562 * 25 24 5 27 27 O 1.21899 * 126.56909 * 179.97438 * 26 25 24 28 28 O 1.34147 * 106.86349 * 359.97438 * 26 25 24 29 29 N 1.21335 * 109.54846 * 359.70952 * 28 26 25 30 30 H 0.97004 * 124.93376 * 180.29867 * 29 28 26 31 31 H 1.09002 * 109.47409 * 299.99773 * 1 2 3 32 32 H 1.09001 * 109.46955 * 60.00185 * 1 2 3 33 33 H 1.08998 * 109.47204 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47547 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47305 * 300.00438 * 3 2 1 36 36 H 1.09001 * 109.47097 * 60.00079 * 3 2 1 37 37 H 1.09005 * 109.47270 * 299.99868 * 4 2 1 38 38 H 1.09001 * 109.47316 * 59.99933 * 4 2 1 39 39 H 1.09000 * 109.47567 * 180.02562 * 4 2 1 40 40 H 0.97005 * 120.00200 * 94.99634 * 7 5 2 41 41 H 1.08006 * 119.82294 * 359.97438 * 11 10 8 42 42 H 1.08002 * 119.79624 * 180.26411 * 12 11 10 43 43 H 1.08003 * 119.98315 * 179.74613 * 13 12 11 44 44 H 0.97002 * 120.00192 * 180.02562 * 18 17 15 45 45 H 1.07998 * 120.20203 * 359.97438 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7213 1.2493 6 1 1.6766 -0.2074 2.1392 7 7 1.5516 -2.1025 1.2492 8 6 0.3297 -2.3852 1.7425 9 8 -0.3671 -1.4943 2.1877 10 6 -0.1609 -3.7803 1.7480 11 6 0.6385 -4.8056 1.2308 12 6 0.1890 -6.1138 1.2378 13 6 -1.0551 -6.4209 1.7434 14 6 -1.8757 -5.4021 2.2626 15 6 -3.1534 -5.7142 2.7829 16 1 -3.6742 -6.5970 2.4424 17 6 -3.7428 -4.8791 3.7387 18 7 -3.0085 -4.0219 4.4001 19 14 -5.5778 -4.9885 4.0703 20 1 -5.8282 -5.9815 5.1456 21 1 -6.0840 -3.6591 4.4964 22 1 -6.2801 -5.4119 2.8322 23 6 -1.4187 -4.0733 2.2618 24 6 3.5469 -0.7218 1.2490 25 7 4.3241 -1.1710 0.2852 26 6 5.5838 -0.9745 0.7090 27 8 6.6051 -1.2563 0.1062 28 8 5.5023 -0.4088 1.9227 29 7 4.3363 -0.2610 2.2242 30 1 4.0226 0.1319 3.0538 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 2.1078 -2.8136 0.8942 41 1 1.6136 -4.5750 0.8276 42 1 0.8153 -6.8986 0.8401 43 1 -1.4008 -7.4441 1.7417 44 1 -3.4169 -3.4433 5.0629 45 1 -2.0408 -3.2846 2.6584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363119833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:31 Heat of formation + Delta-G solvation = 24.427643 kcal Electronic energy + Delta-G solvation = -30814.641715 eV Core-core repulsion = 26608.332581 eV Total energy + Delta-G solvation = -4206.309134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -45.95586 -40.28262 -38.26683 -38.09710 -36.89631 -35.45570 -33.96574 -33.47755 -32.71468 -30.34968 -29.53499 -27.92758 -27.27092 -27.03828 -25.35898 -24.32607 -22.92300 -22.35997 -21.04406 -20.57506 -19.76822 -19.04315 -18.76529 -17.99284 -17.02748 -16.46509 -16.09247 -15.91720 -15.45035 -15.20911 -14.85652 -14.51120 -14.08130 -13.96430 -13.70760 -13.53728 -13.25062 -13.03194 -12.75321 -12.59971 -12.45969 -12.28872 -12.14480 -11.77125 -11.72452 -11.48791 -11.30757 -11.21601 -11.13969 -11.02370 -10.82949 -10.79011 -10.56829 -10.40033 -10.14422 -9.78351 -9.40887 -9.29830 -9.23990 -9.02555 -7.74465 -7.60574 -6.88636 -4.49435 0.54175 1.41762 2.04049 2.54283 2.73230 2.76018 3.02771 3.04477 3.10312 3.35598 3.57257 3.71605 3.85626 4.18876 4.44037 4.56061 4.72418 4.89312 5.03884 5.29275 5.35523 5.51088 5.52945 5.56583 5.67008 5.80633 5.84390 5.94541 6.00834 6.06969 6.10363 6.17397 6.20062 6.43139 6.49995 6.58295 6.63247 6.88176 6.91285 7.12001 7.27809 7.28473 7.54587 7.61526 7.63772 7.78696 7.89891 8.08264 8.40979 8.63535 8.72605 8.75161 10.06166 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.002941 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.513348 B = 9518.705550 C =10172.199492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 C -0.145 4.145 4 C -0.157 4.157 5 C 0.226 3.774 6 H 0.117 0.883 7 N -0.726 5.726 8 C 0.574 3.426 9 O -0.533 6.533 10 C -0.130 4.130 11 C -0.217 4.217 12 C -0.096 4.096 13 C -0.208 4.208 14 C 0.098 3.902 15 C -0.459 4.459 16 H 0.081 0.919 17 C 0.074 3.926 18 N -0.785 5.785 19 Si 0.909 3.091 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.260 1.260 23 C -0.088 4.088 24 C 0.352 3.648 25 N -0.532 5.532 26 C 0.555 3.445 27 O -0.469 6.469 28 O -0.082 6.082 29 N -0.493 5.493 30 H 0.472 0.528 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.409 0.591 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.284 0.716 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.471 10.438 -2.594 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.071 4.071 3 C -0.203 4.203 4 C -0.214 4.214 5 C 0.118 3.882 6 H 0.134 0.866 7 N -0.382 5.382 8 C 0.365 3.635 9 O -0.410 6.410 10 C -0.133 4.133 11 C -0.237 4.237 12 C -0.115 4.115 13 C -0.228 4.228 14 C 0.096 3.904 15 C -0.488 4.488 16 H 0.099 0.901 17 C -0.145 4.145 18 N -0.409 5.409 19 Si 0.733 3.267 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.108 4.108 24 C 0.082 3.918 25 N -0.294 5.294 26 C 0.304 3.696 27 O -0.350 6.350 28 O -0.104 6.104 29 N -0.159 5.159 30 H 0.326 0.674 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.106 0.894 40 H 0.247 0.753 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.795 10.842 -2.931 13.671 hybrid contribution -0.119 0.034 1.086 1.093 sum 7.676 10.876 -1.846 13.440 Atomic orbital electron populations 1.21915 0.91809 1.03490 1.01821 1.20936 0.97568 0.94707 0.93930 1.21932 1.00221 0.95227 1.02897 1.22165 1.03652 1.00409 0.95203 1.19620 0.79337 0.87194 1.02058 0.86550 1.45940 1.19473 1.06830 1.65970 1.18821 0.79394 0.89882 0.75353 1.90724 1.55907 1.48163 1.46232 1.19338 0.97569 0.89856 1.06536 1.20367 0.99401 0.93303 1.10603 1.20454 0.96086 0.95046 0.99868 1.21136 0.94942 0.97835 1.08925 1.17591 0.92515 0.90567 0.89742 1.19591 1.00991 1.08736 1.19460 0.90067 1.25945 1.00428 0.93697 0.94402 1.69774 1.37419 1.16813 1.16887 0.86290 0.82133 0.78604 0.79658 1.19446 1.19932 1.18348 1.21616 0.93670 0.97438 0.98104 1.25657 0.97707 0.85369 0.83086 1.73424 0.99713 1.31480 1.24739 1.22082 0.90567 0.79439 0.77499 1.91184 1.33655 1.54601 1.55515 1.85257 1.10611 1.72922 1.41617 1.42537 0.95824 1.56494 1.21071 0.67411 0.91536 0.92831 0.91533 0.93357 0.91319 0.92190 0.92015 0.92832 0.89391 0.75335 0.89175 0.88801 0.88558 0.90465 0.84741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 7.00 37.15 0.26 -1.41 16 2 C -0.07 -0.73 0.62 -154.51 -0.10 -0.83 16 3 C -0.14 -1.21 8.23 37.16 0.31 -0.91 16 4 C -0.16 -1.78 7.92 37.16 0.29 -1.49 16 5 C 0.23 2.41 2.09 -69.08 -0.14 2.27 16 6 H 0.12 1.13 7.58 -51.93 -0.39 0.73 16 7 N -0.73 -9.89 4.14 -55.87 -0.23 -10.12 16 8 C 0.57 10.35 6.13 -12.31 -0.08 10.28 16 9 O -0.53 -10.60 13.46 5.32 0.07 -10.53 16 10 C -0.13 -2.74 5.87 -105.04 -0.62 -3.36 16 11 C -0.22 -4.23 9.55 -38.92 -0.37 -4.60 16 12 C -0.10 -1.95 10.01 -39.73 -0.40 -2.35 16 13 C -0.21 -4.70 9.78 -38.81 -0.38 -5.08 16 14 C 0.10 2.45 5.57 -106.87 -0.59 1.85 16 15 C -0.46 -11.45 9.05 -37.73 -0.34 -11.79 16 16 H 0.08 1.93 7.90 -52.48 -0.41 1.52 16 17 C 0.07 1.78 5.14 -17.35 -0.09 1.69 16 18 N -0.78 -19.44 10.97 55.55 0.61 -18.83 16 19 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 20 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.09 -2.15 8.23 -38.44 -0.32 -2.47 16 24 C 0.35 3.49 5.58 -155.64 -0.87 2.62 16 25 N -0.53 -6.74 8.68 -14.52 -0.13 -6.87 16 26 C 0.55 7.78 9.62 53.45 0.51 8.29 16 27 O -0.47 -8.24 18.07 -19.16 -0.35 -8.59 16 28 O -0.08 -0.86 11.35 -7.39 -0.08 -0.94 16 29 N -0.49 -3.71 6.79 32.13 0.22 -3.49 16 30 H 0.47 1.57 8.96 -40.82 -0.37 1.21 16 31 H 0.07 0.87 7.53 -51.93 -0.39 0.48 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.03 5.78 -51.93 -0.30 0.73 16 34 H 0.05 0.40 7.22 -51.93 -0.37 0.03 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.77 7.60 -51.93 -0.39 0.38 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.06 5.31 -51.93 -0.28 0.79 16 40 H 0.41 5.45 6.61 -40.82 -0.27 5.18 16 41 H 0.09 1.49 6.38 -52.48 -0.33 1.15 16 42 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 44 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 45 H 0.13 3.53 5.76 -52.49 -0.30 3.23 16 LS Contribution 368.35 15.07 5.55 5.55 Total: -1.00 -30.07 368.35 -7.77 -37.84 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.49 Total: 10.46 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -2.92 Total: -7.27 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.47 Total: -39.31 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.36 Total: -20.06 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.07 -7.77 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363119833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.269 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds