Wall clock time and date at job start Wed Apr 1 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47385 * 2 1 4 4 C 1.52999 * 109.47370 * 240.00102 * 2 1 3 5 5 C 1.53005 * 109.46927 * 120.00014 * 2 1 3 6 6 H 1.08995 * 109.46892 * 299.99752 * 5 2 1 7 7 N 1.46498 * 109.47171 * 60.00382 * 5 2 1 8 8 C 1.34774 * 119.99669 * 274.99956 * 7 5 2 9 9 O 1.21550 * 120.00221 * 359.97438 * 8 7 5 10 10 C 1.47886 * 120.00168 * 180.27493 * 8 7 5 11 11 C 1.39920 * 120.02326 * 359.44637 * 10 8 7 12 12 C 1.38327 * 120.36048 * 179.71545 * 11 10 8 13 13 C 1.37753 * 120.40898 * 0.56504 * 12 11 10 14 14 C 1.40746 * 120.04035 * 359.71592 * 13 12 11 15 15 C 1.41437 * 120.17923 * 180.02562 * 14 13 12 16 16 H 1.08009 * 119.99845 * 334.92899 * 15 14 13 17 17 C 1.39936 * 120.00340 * 154.93332 * 15 14 13 18 18 N 1.30823 * 119.99598 * 342.58086 * 17 15 14 19 19 Si 1.86795 * 120.00306 * 162.58558 * 17 15 14 20 20 H 1.48494 * 109.47345 * 89.99634 * 19 17 15 21 21 H 1.48501 * 109.47433 * 209.99919 * 19 17 15 22 22 H 1.48504 * 109.47118 * 329.99571 * 19 17 15 23 23 C 1.38993 * 120.02928 * 179.72332 * 10 8 7 24 24 C 1.50701 * 109.46862 * 179.97438 * 5 2 1 25 25 N 1.31701 * 126.18592 * 305.03041 * 24 5 2 26 26 C 1.34346 * 105.81926 * 180.02562 * 25 24 5 27 27 O 1.21899 * 126.56909 * 179.97438 * 26 25 24 28 28 O 1.34147 * 106.86349 * 359.97438 * 26 25 24 29 29 N 1.21335 * 109.54846 * 359.70952 * 28 26 25 30 30 H 0.97004 * 124.93376 * 180.29867 * 29 28 26 31 31 H 1.09002 * 109.47409 * 299.99773 * 1 2 3 32 32 H 1.09001 * 109.46955 * 60.00185 * 1 2 3 33 33 H 1.08998 * 109.47204 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47547 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47305 * 300.00438 * 3 2 1 36 36 H 1.09001 * 109.47097 * 60.00079 * 3 2 1 37 37 H 1.09005 * 109.47270 * 299.99868 * 4 2 1 38 38 H 1.09001 * 109.47316 * 59.99933 * 4 2 1 39 39 H 1.09000 * 109.47567 * 180.02562 * 4 2 1 40 40 H 0.97005 * 120.00200 * 94.99634 * 7 5 2 41 41 H 1.08006 * 119.82294 * 359.97438 * 11 10 8 42 42 H 1.08002 * 119.79624 * 180.26411 * 12 11 10 43 43 H 1.08003 * 119.98315 * 179.74613 * 13 12 11 44 44 H 0.97002 * 120.00192 * 180.02562 * 18 17 15 45 45 H 1.07998 * 120.20203 * 359.97438 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0399 -0.7213 1.2493 6 1 1.6766 -0.2074 2.1392 7 7 1.5516 -2.1025 1.2492 8 6 0.3297 -2.3852 1.7425 9 8 -0.3671 -1.4943 2.1877 10 6 -0.1609 -3.7803 1.7480 11 6 0.6385 -4.8056 1.2308 12 6 0.1890 -6.1138 1.2378 13 6 -1.0551 -6.4209 1.7434 14 6 -1.8757 -5.4021 2.2626 15 6 -3.1534 -5.7142 2.7829 16 1 -3.6742 -6.5970 2.4424 17 6 -3.7428 -4.8791 3.7387 18 7 -3.0085 -4.0219 4.4001 19 14 -5.5778 -4.9885 4.0703 20 1 -5.8282 -5.9815 5.1456 21 1 -6.0840 -3.6591 4.4964 22 1 -6.2801 -5.4119 2.8322 23 6 -1.4187 -4.0733 2.2618 24 6 3.5469 -0.7218 1.2490 25 7 4.3241 -1.1710 0.2852 26 6 5.5838 -0.9745 0.7090 27 8 6.6051 -1.2563 0.1062 28 8 5.5023 -0.4088 1.9227 29 7 4.3363 -0.2610 2.2242 30 1 4.0226 0.1319 3.0538 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 2.1078 -2.8136 0.8942 41 1 1.6136 -4.5750 0.8276 42 1 0.8153 -6.8986 0.8401 43 1 -1.4008 -7.4441 1.7417 44 1 -3.4169 -3.4433 5.0629 45 1 -2.0408 -3.2846 2.6584 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363119833.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:30 Heat of formation + Delta-G solvation = 4.952804 kcal Electronic energy + Delta-G solvation = -30815.486208 eV Core-core repulsion = 26608.332581 eV Total energy + Delta-G solvation = -4207.153626 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.85902 -41.52593 -39.46562 -39.36189 -38.38365 -36.40360 -35.62739 -34.77492 -33.65795 -31.98240 -31.25064 -28.98252 -28.14951 -27.98045 -27.09459 -25.29971 -24.20943 -23.52865 -22.75595 -21.49306 -21.13123 -20.00280 -19.71928 -19.52204 -18.36055 -17.56771 -17.48168 -17.09760 -16.79132 -16.50362 -16.41868 -15.65196 -15.46031 -15.04564 -15.00479 -14.84025 -14.56484 -14.36193 -14.24769 -13.87167 -13.47052 -13.31024 -13.21879 -13.00628 -12.94168 -12.77115 -12.67309 -12.52254 -12.45012 -12.24683 -12.16963 -11.99816 -11.85505 -11.69987 -11.48846 -11.35465 -11.03660 -10.77154 -10.36722 -10.23395 -9.45886 -9.35736 -8.64148 -6.34800 -0.37521 0.39287 0.61399 1.03649 1.40203 1.48260 1.49550 1.54840 1.73495 2.07313 2.22012 2.25356 2.67997 2.81822 3.32223 3.55980 3.72977 3.84390 3.95536 4.07635 4.28459 4.40930 4.43945 4.48765 4.60188 4.77344 4.82896 4.91629 4.94597 5.05013 5.08397 5.11933 5.14210 5.19842 5.21563 5.33496 5.34910 5.39787 5.48423 5.55239 5.64112 5.86815 5.95275 6.07587 6.25091 6.30454 6.42321 6.64102 6.68951 6.91634 6.96144 7.23427 8.32651 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016056 B = 0.002941 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.513348 B = 9518.705550 C =10172.199492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.065 4.065 3 C -0.141 4.141 4 C -0.154 4.154 5 C 0.226 3.774 6 H 0.135 0.865 7 N -0.709 5.709 8 C 0.580 3.420 9 O -0.554 6.554 10 C -0.136 4.136 11 C -0.200 4.200 12 C -0.098 4.098 13 C -0.219 4.219 14 C 0.068 3.932 15 C -0.498 4.498 16 H 0.079 0.921 17 C 0.035 3.965 18 N -0.820 5.820 19 Si 0.978 3.022 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.258 1.258 23 C -0.121 4.121 24 C 0.361 3.639 25 N -0.545 5.545 26 C 0.551 3.449 27 O -0.515 6.515 28 O -0.069 6.069 29 N -0.464 5.464 30 H 0.493 0.507 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.033 0.967 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.413 0.587 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.103 0.897 44 H 0.288 0.712 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.598 11.489 -2.725 14.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.067 4.067 3 C -0.198 4.198 4 C -0.211 4.211 5 C 0.120 3.880 6 H 0.152 0.848 7 N -0.364 5.364 8 C 0.371 3.629 9 O -0.433 6.433 10 C -0.139 4.139 11 C -0.220 4.220 12 C -0.116 4.116 13 C -0.239 4.239 14 C 0.066 3.934 15 C -0.528 4.528 16 H 0.097 0.903 17 C -0.180 4.180 18 N -0.445 5.445 19 Si 0.798 3.202 20 H -0.186 1.186 21 H -0.194 1.194 22 H -0.182 1.182 23 C -0.141 4.141 24 C 0.090 3.910 25 N -0.309 5.309 26 C 0.301 3.699 27 O -0.399 6.399 28 O -0.091 6.091 29 N -0.130 5.130 30 H 0.352 0.648 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.251 0.749 41 H 0.146 0.854 42 H 0.148 0.852 43 H 0.122 0.878 44 H 0.098 0.902 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.927 11.920 -3.017 15.195 hybrid contribution -0.339 -0.265 1.064 1.148 sum 8.588 11.655 -1.954 14.609 Atomic orbital electron populations 1.21827 0.93213 1.01383 1.02091 1.20898 0.96175 0.96300 0.93320 1.21900 1.00392 0.93371 1.04157 1.22122 1.03260 0.99736 0.95970 1.19793 0.79627 0.85410 1.03215 0.84755 1.45643 1.17894 1.08494 1.64382 1.18310 0.80488 0.88452 0.75696 1.90716 1.56873 1.48320 1.47371 1.19679 0.96701 0.92285 1.05238 1.20814 1.00294 0.92625 1.08257 1.20874 0.95485 0.96413 0.98840 1.21384 0.95853 0.97804 1.08832 1.17924 0.93312 0.91466 0.90705 1.19829 1.02105 1.09785 1.21033 0.90260 1.26723 1.04546 0.93045 0.93726 1.69848 1.39116 1.17864 1.17701 0.85265 0.76614 0.78772 0.79499 1.18583 1.19381 1.18220 1.21429 0.95242 0.96728 1.00699 1.25300 0.97108 0.85403 0.83145 1.73416 0.99423 1.32353 1.25662 1.22081 0.90335 0.79576 0.77911 1.91148 1.34962 1.56807 1.56978 1.85261 1.11543 1.71905 1.40388 1.42679 0.94656 1.54636 1.21073 0.64821 0.92243 0.91614 0.94757 0.92950 0.90653 0.90546 0.93504 0.92069 0.89759 0.74869 0.85413 0.85174 0.87846 0.90172 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 7.00 71.98 0.50 -2.54 16 2 C -0.06 -1.22 0.62 -52.18 -0.03 -1.25 16 3 C -0.14 -1.89 8.23 71.98 0.59 -1.30 16 4 C -0.15 -3.19 7.92 71.98 0.57 -2.62 16 5 C 0.23 4.25 2.09 44.25 0.09 4.34 16 6 H 0.13 2.16 7.58 -2.39 -0.02 2.15 16 7 N -0.71 -17.93 4.14 -448.94 -1.86 -19.79 16 8 C 0.58 20.57 6.13 86.80 0.53 21.10 16 9 O -0.55 -22.09 13.46 -3.87 -0.05 -22.15 16 10 C -0.14 -5.73 5.87 -20.13 -0.12 -5.85 16 11 C -0.20 -7.42 9.55 22.70 0.22 -7.20 16 12 C -0.10 -3.79 10.01 22.18 0.22 -3.57 16 13 C -0.22 -9.92 9.78 22.77 0.22 -9.69 16 14 C 0.07 3.52 5.57 -21.32 -0.12 3.40 16 15 C -0.50 -26.00 9.05 23.47 0.21 -25.79 16 16 H 0.08 3.96 7.90 -2.91 -0.02 3.94 16 17 C 0.04 1.74 5.14 85.25 0.44 2.17 16 18 N -0.82 -42.45 10.97 21.82 0.24 -42.21 16 19 Si 0.98 37.58 29.59 68.60 2.03 39.61 16 20 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 22 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 23 C -0.12 -6.11 8.23 23.01 0.19 -5.92 16 24 C 0.36 6.08 5.58 138.21 0.77 6.85 16 25 N -0.55 -12.59 8.68 -431.17 -3.74 -16.33 16 26 C 0.55 14.46 9.62 130.00 1.25 15.71 16 27 O -0.52 -17.78 18.07 18.13 0.33 -17.45 16 28 O -0.07 -1.25 11.35 93.21 1.06 -0.19 16 29 N -0.46 -5.35 6.79 -53.62 -0.36 -5.72 16 30 H 0.49 1.26 8.96 -92.71 -0.83 0.43 16 31 H 0.06 1.50 7.53 -2.39 -0.02 1.48 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.03 1.04 5.78 -2.39 -0.01 1.02 16 34 H 0.05 0.69 7.22 -2.38 -0.02 0.67 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 1.10 7.60 -2.38 -0.02 1.08 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.86 5.31 -2.39 -0.01 1.85 16 40 H 0.41 9.90 6.61 -92.70 -0.61 9.29 16 41 H 0.13 3.74 6.38 -2.91 -0.02 3.72 16 42 H 0.13 4.07 8.06 -2.91 -0.02 4.04 16 43 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 44 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 45 H 0.11 5.96 5.76 -2.91 -0.02 5.94 16 Total: -1.00 -69.33 368.35 2.81 -66.52 By element: Atomic # 1 Polarization: 30.24 SS G_CDS: -0.37 Total: 29.87 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 5.54 Total: -12.16 kcal Atomic # 7 Polarization: -78.32 SS G_CDS: -5.73 Total: -84.05 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: 1.33 Total: -39.78 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -69.33 2.81 -66.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363119833.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.470 kcal (2) G-P(sol) polarization free energy of solvation -69.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds