Wall clock time and date at job start Wed Apr 1 2020 02:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.46942 * 2 1 4 4 C 1.53002 * 109.47192 * 296.91445 * 3 2 1 5 5 C 1.52996 * 109.47139 * 294.30901 * 4 3 2 6 6 C 1.53006 * 109.46874 * 56.91322 * 3 2 1 7 7 N 1.46494 * 109.47027 * 63.89561 * 6 3 2 8 8 C 1.46502 * 120.00200 * 273.04484 * 7 6 3 9 9 C 1.50694 * 109.47126 * 275.38513 * 8 7 6 10 10 H 1.08005 * 120.00270 * 0.02562 * 9 8 7 11 11 C 1.37876 * 120.00218 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99879 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00141 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47003 * 60.00620 * 13 11 9 15 15 H 1.48505 * 109.47288 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47454 * 300.00623 * 13 11 9 17 17 S 1.65600 * 119.99925 * 93.04278 * 7 6 3 18 18 O 1.42107 * 104.27886 * 153.93029 * 17 7 6 19 19 O 1.42092 * 104.27884 * 26.07262 * 17 7 6 20 20 C 1.81397 * 104.45113 * 270.00035 * 17 7 6 21 21 C 1.50702 * 109.47379 * 179.97438 * 20 17 7 22 22 N 1.29942 * 126.29087 * 269.98114 * 21 20 17 23 23 O 1.21304 * 110.25319 * 179.72667 * 22 21 20 24 24 C 1.33638 * 109.80880 * 0.46012 * 23 22 21 25 25 C 1.50701 * 126.55066 * 179.80276 * 24 23 22 26 26 N 1.31132 * 106.89945 * 359.54627 * 24 23 22 27 27 H 1.08998 * 109.47699 * 63.89921 * 1 2 3 28 28 H 1.09009 * 109.46668 * 183.89815 * 1 2 3 29 29 H 1.09002 * 109.47029 * 303.89037 * 1 2 3 30 30 H 1.09004 * 109.47167 * 240.00724 * 2 1 3 31 31 H 1.08998 * 109.47887 * 120.00276 * 2 1 3 32 32 H 1.08996 * 109.47127 * 176.91087 * 3 2 1 33 33 H 1.09003 * 109.46642 * 54.30838 * 4 3 2 34 34 H 1.08992 * 109.46930 * 174.30567 * 4 3 2 35 35 H 1.09008 * 109.47058 * 65.49831 * 5 4 3 36 36 H 1.09003 * 109.47357 * 185.49895 * 5 4 3 37 37 H 1.08999 * 109.47211 * 305.50160 * 5 4 3 38 38 H 1.08997 * 109.47013 * 303.89879 * 6 3 2 39 39 H 1.08998 * 109.46848 * 183.89530 * 6 3 2 40 40 H 1.08998 * 109.47165 * 35.38893 * 8 7 6 41 41 H 1.09002 * 109.47069 * 155.38462 * 8 7 6 42 42 H 0.96995 * 119.99918 * 179.97438 * 12 11 9 43 43 H 1.08995 * 109.47271 * 59.99749 * 20 17 7 44 44 H 1.09004 * 109.47091 * 300.00129 * 20 17 7 45 45 H 1.08995 * 109.47248 * 269.69239 * 25 24 23 46 46 H 1.09005 * 109.46630 * 29.69484 * 25 24 23 47 47 H 1.08998 * 109.47086 * 149.68884 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5943 2.1411 -1.2863 5 6 2.2798 1.4853 -2.4866 6 6 1.4674 2.1859 1.2087 7 7 1.9692 1.5734 2.4412 8 6 1.2620 0.4357 3.0344 9 6 0.1391 0.9402 3.9036 10 1 -0.0311 2.0020 4.0038 11 6 -0.6717 0.0462 4.5702 12 7 -0.4648 -1.2468 4.4479 13 14 -2.0632 0.6716 5.6482 14 1 -3.0082 1.4675 4.8244 15 1 -2.7802 -0.4815 6.2495 16 1 -1.5072 1.5260 6.7281 17 16 3.3360 2.1669 3.1638 18 8 3.1869 1.8201 4.5338 19 8 3.3871 3.5263 2.7537 20 6 4.6912 1.2239 2.4124 21 6 6.0040 1.6794 2.9958 22 7 6.7586 2.6337 2.5394 23 8 7.7444 2.7587 3.2351 24 6 7.7162 1.8622 4.2257 25 6 8.7542 1.6824 5.3034 26 7 6.6099 1.1724 4.0843 27 1 -0.3634 0.4521 -0.9228 28 1 -0.3633 -1.0254 0.0699 29 1 -0.3633 0.5730 0.8531 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.1285 1.4431 0.0554 33 1 0.5131 2.0522 -1.3920 34 1 1.8696 3.1947 -1.2416 35 1 1.9291 0.4582 -2.5888 36 1 2.0397 2.0431 -3.3917 37 1 3.3592 1.4871 -2.3343 38 1 0.3793 2.1258 1.1901 39 1 1.7744 3.2310 1.1712 40 1 0.8544 -0.1920 2.2421 41 1 1.9559 -0.1479 3.6396 42 1 -1.0350 -1.8757 4.9172 43 1 4.6957 1.3898 1.3352 44 1 4.5516 0.1622 2.6159 45 1 9.5020 0.9625 4.9710 46 1 9.2358 2.6389 5.5070 47 1 8.2755 1.3161 6.2115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364765310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:08 Heat of formation + Delta-G solvation = -36.065018 kcal Electronic energy + Delta-G solvation = -30086.182257 eV Core-core repulsion = 26012.693916 eV Total energy + Delta-G solvation = -4073.488341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.93558 -39.48062 -38.32422 -37.47471 -37.12345 -36.06275 -35.08843 -34.33762 -31.97076 -31.24660 -30.17625 -29.76718 -27.91734 -25.50207 -25.05089 -24.28179 -23.73630 -22.90440 -20.21500 -19.88267 -19.48647 -18.90088 -18.69505 -18.28778 -17.61817 -17.36096 -16.54391 -16.43531 -16.12191 -15.93859 -15.50509 -15.21155 -14.76849 -14.38305 -14.29505 -14.24209 -14.07530 -13.90530 -13.73575 -13.48885 -13.42444 -13.33277 -13.25495 -13.06072 -13.03948 -12.96850 -12.70194 -12.51813 -12.46999 -12.34790 -12.27375 -12.11157 -12.06250 -11.82622 -11.61907 -11.34640 -11.15108 -11.13975 -11.01548 -10.50250 -9.69734 -8.15413 -6.24090 -1.06558 -0.02701 0.91340 1.39035 1.42384 1.48374 1.55867 1.74593 2.18917 2.43298 2.62779 2.77034 3.09868 3.16833 3.54098 3.70682 3.84604 3.97041 4.06312 4.11666 4.24597 4.35598 4.52058 4.53291 4.54846 4.64317 4.68359 4.75893 4.84484 4.85023 4.95658 5.00347 5.07554 5.10357 5.14965 5.20811 5.24553 5.39482 5.43100 5.51048 5.54936 5.60735 5.73351 5.76992 5.94557 6.18775 6.81831 6.88646 7.42550 8.91547 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009064 B = 0.004632 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.559105 B = 6043.415401 C = 8270.782574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.106 4.106 4 C -0.119 4.119 5 C -0.148 4.148 6 C 0.111 3.889 7 N -0.975 5.975 8 C 0.257 3.743 9 C -0.541 4.541 10 H 0.046 0.954 11 C 0.019 3.981 12 N -0.919 5.919 13 Si 0.945 3.055 14 H -0.265 1.265 15 H -0.277 1.277 16 H -0.283 1.283 17 S 2.607 3.393 18 O -0.973 6.973 19 O -0.979 6.979 20 C -0.537 4.537 21 C 0.152 3.848 22 N -0.382 5.382 23 O 0.094 5.906 24 C 0.195 3.805 25 C -0.063 4.063 26 N -0.509 5.509 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.012 0.988 42 H 0.266 0.734 43 H 0.182 0.818 44 H 0.174 0.826 45 H 0.134 0.866 46 H 0.131 0.869 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.884 3.315 -8.988 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.126 4.126 4 C -0.157 4.157 5 C -0.205 4.205 6 C -0.014 4.014 7 N -0.813 5.813 8 C 0.134 3.866 9 C -0.581 4.581 10 H 0.064 0.936 11 C -0.181 4.181 12 N -0.559 5.559 13 Si 0.771 3.229 14 H -0.190 1.190 15 H -0.201 1.201 16 H -0.209 1.209 17 S 2.698 3.302 18 O -0.963 6.963 19 O -0.969 6.969 20 C -0.665 4.665 21 C -0.121 4.121 22 N -0.088 5.088 23 O 0.030 5.970 24 C -0.024 4.024 25 C -0.121 4.121 26 N -0.243 5.243 27 H 0.088 0.912 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.085 0.915 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.199 0.801 44 H 0.192 0.808 45 H 0.152 0.848 46 H 0.150 0.850 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 15.306 3.941 -8.889 18.133 hybrid contribution -0.692 -0.448 0.587 1.012 sum 14.613 3.493 -8.302 17.166 Atomic orbital electron populations 1.21876 0.96234 1.01165 1.01839 1.21600 0.96186 0.95839 1.01916 1.21753 1.00035 0.96124 0.94729 1.21546 1.01480 0.99526 0.93115 1.21774 1.00419 1.01049 0.97285 1.21680 1.01513 0.96400 0.81847 1.57219 1.39199 1.47082 1.37837 1.19081 0.90808 0.83226 0.93438 1.21733 1.14721 0.92909 1.28699 0.93597 1.25563 0.99869 0.95040 0.97600 1.69974 1.40313 1.01604 1.44041 0.85814 0.79709 0.78079 0.79332 1.18971 1.20146 1.20884 1.04994 0.75671 0.74861 0.74658 1.93591 1.84944 1.84731 1.33003 1.93497 1.86988 1.32559 1.83834 1.29285 1.04966 1.17815 1.14453 1.24556 0.99739 0.94463 0.93314 1.74673 0.97685 1.19577 1.16875 1.85262 1.33213 1.47420 1.31118 1.30145 0.95467 0.84242 0.92549 1.20938 0.92713 1.07759 0.90672 1.71982 1.07496 1.28208 1.16601 0.91218 0.93972 0.93330 0.90306 0.92859 0.91012 0.90976 0.91545 0.92253 0.91871 0.92743 0.89373 0.89975 0.91487 0.97003 0.92526 0.80076 0.80779 0.84841 0.85048 0.86874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 8.33 71.98 0.60 -4.02 16 2 C -0.12 -3.26 4.92 30.60 0.15 -3.11 16 3 C -0.11 -2.79 2.37 -10.79 -0.03 -2.82 16 4 C -0.12 -2.51 5.25 30.59 0.16 -2.35 16 5 C -0.15 -2.58 9.55 71.98 0.69 -1.90 16 6 C 0.11 3.77 4.88 86.38 0.42 4.19 16 7 N -0.97 -39.99 2.56 -519.86 -1.33 -41.32 16 8 C 0.26 12.61 4.01 85.63 0.34 12.95 16 9 C -0.54 -30.47 9.38 25.60 0.24 -30.23 16 10 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 11 C 0.02 1.07 5.46 84.65 0.46 1.53 16 12 N -0.92 -53.11 13.29 21.45 0.28 -52.83 16 13 Si 0.95 45.01 29.54 68.60 2.03 47.03 16 14 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 15 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 16 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 17 S 2.61 108.56 5.35 -56.49 -0.30 108.26 16 18 O -0.97 -49.92 16.98 -127.65 -2.17 -52.08 16 19 O -0.98 -42.83 16.54 -127.65 -2.11 -44.94 16 20 C -0.54 -16.98 6.80 71.24 0.48 -16.49 16 21 C 0.15 5.07 7.48 138.46 1.04 6.10 16 22 N -0.38 -12.02 12.16 -60.32 -0.73 -12.76 16 23 O 0.09 2.36 11.31 74.88 0.85 3.21 16 24 C 0.20 4.32 8.51 88.38 0.75 5.07 16 25 C -0.06 -0.51 10.51 71.24 0.75 0.24 16 26 N -0.51 -16.00 11.55 -303.20 -3.50 -19.50 16 27 H 0.07 1.71 6.58 -2.39 -0.02 1.70 16 28 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.05 1.75 5.12 -2.39 -0.01 1.74 16 30 H 0.08 1.79 6.57 -2.39 -0.02 1.77 16 31 H 0.05 1.70 5.85 -2.39 -0.01 1.68 16 32 H 0.07 1.69 6.72 -2.39 -0.02 1.68 16 33 H 0.07 1.51 6.33 -2.39 -0.02 1.49 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.01 6.79 -2.38 -0.02 0.99 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.09 3.14 6.02 -2.39 -0.01 3.12 16 39 H 0.08 2.73 6.85 -2.39 -0.02 2.72 16 40 H 0.07 3.16 4.00 -2.39 -0.01 3.15 16 41 H 0.01 0.64 7.59 -2.39 -0.02 0.62 16 42 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.18 4.46 6.72 -2.39 -0.02 4.45 16 44 H 0.17 5.01 8.14 -2.39 -0.02 4.99 16 45 H 0.13 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.13 0.30 8.14 -2.38 -0.02 0.28 16 47 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -79.54 384.46 0.06 -79.48 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.99 Total: 16.30 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 6.06 Total: -30.84 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -5.28 Total: -126.41 kcal Atomic # 8 Polarization: -90.39 SS G_CDS: -3.43 Total: -93.82 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 108.56 SS G_CDS: -0.30 Total: 108.26 kcal Total: -79.54 0.06 -79.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364765310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.413 kcal (2) G-P(sol) polarization free energy of solvation -79.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds