Wall clock time and date at job start Wed Apr 1 2020 03:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47169 * 2 1 4 4 H 1.09004 * 109.47353 * 54.31962 * 3 2 1 5 5 C 1.50699 * 109.47265 * 174.31956 * 3 2 1 6 6 H 1.08005 * 119.99440 * 25.67734 * 5 3 2 7 7 C 1.37872 * 120.00282 * 205.67452 * 5 3 2 8 8 N 1.31518 * 120.00288 * 353.27481 * 7 5 3 9 9 Si 1.86803 * 120.00051 * 173.27681 * 7 5 3 10 10 H 1.48493 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46991 * 239.99811 * 9 7 5 12 12 H 1.48498 * 109.46973 * 120.00184 * 9 7 5 13 13 N 1.46502 * 109.47411 * 294.32380 * 3 2 1 14 14 C 1.34778 * 120.00055 * 84.99625 * 13 3 2 15 15 O 1.21280 * 119.99847 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99890 * 179.97438 * 14 13 3 17 17 C 1.52995 * 109.47065 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.57247 * 54.75262 * 17 16 14 19 19 N 1.46293 * 109.57004 * 294.37994 * 17 16 14 20 20 C 1.33156 * 121.50393 * 303.11594 * 19 17 16 21 21 O 1.21592 * 117.76105 * 180.76619 * 20 19 17 22 22 C 1.46765 * 124.48242 * 0.79377 * 20 19 17 23 23 C 1.40498 * 117.55926 * 139.65464 * 22 20 19 24 24 C 1.37463 * 120.52317 * 180.41889 * 23 22 20 25 25 C 1.38568 * 120.04893 * 0.04931 * 24 23 22 26 26 C 1.37671 * 120.14587 * 359.87357 * 25 24 23 27 27 C 1.39405 * 123.13129 * 319.93852 * 22 20 19 28 28 N 1.38376 * 123.44792 * 359.39457 * 27 22 20 29 29 C 1.32984 * 125.59164 * 40.96260 * 28 27 22 30 30 O 1.21270 * 119.02947 * 177.52474 * 29 28 27 31 31 H 1.09002 * 109.46818 * 299.99767 * 1 2 3 32 32 H 1.08998 * 109.47087 * 59.99940 * 1 2 3 33 33 H 1.08996 * 109.47072 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46818 * 240.00233 * 2 1 3 35 35 H 1.08998 * 109.47087 * 120.00060 * 2 1 3 36 36 H 0.96998 * 119.99530 * 354.66598 * 8 7 5 37 37 H 0.96995 * 119.99871 * 265.00146 * 13 3 2 38 38 H 1.09004 * 109.47205 * 300.00728 * 16 14 13 39 39 H 1.09000 * 109.46799 * 60.00358 * 16 14 13 40 40 H 0.97008 * 119.24628 * 123.13514 * 19 17 16 41 41 H 1.08003 * 119.74162 * 0.45784 * 23 22 20 42 42 H 1.08000 * 119.97658 * 180.02562 * 24 23 22 43 43 H 1.07996 * 119.93062 * 179.90502 * 25 24 23 44 44 H 1.08010 * 119.65976 * 180.02562 * 26 25 24 45 45 H 0.96993 * 117.20342 * 220.97330 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5961 1.9849 0.8348 5 6 3.5405 1.4448 0.1406 6 1 4.1146 0.5897 -0.1845 7 6 4.1803 2.5385 0.6842 8 7 3.4994 3.6300 0.9576 9 14 6.0143 2.4700 1.0324 10 1 6.5435 1.1397 0.6385 11 1 6.2513 2.6871 2.4823 12 1 6.7057 3.5288 0.2539 13 7 1.6665 2.0926 -1.2586 14 6 0.4505 2.6590 -1.3895 15 8 -0.3342 2.6309 -0.4653 16 6 0.0665 3.3282 -2.6840 17 6 -1.3537 3.8854 -2.5684 18 1 -1.4188 4.5420 -1.7008 19 7 -2.3028 2.7816 -2.4231 20 6 -2.3802 1.8070 -3.3271 21 8 -3.2033 0.9306 -3.1458 22 6 -1.5398 1.7179 -4.5269 23 6 -1.0629 0.4482 -4.8937 24 6 -0.2637 0.2959 -6.0017 25 6 0.0790 1.3991 -6.7670 26 6 -0.3814 2.6498 -6.4220 27 6 -1.1968 2.8254 -5.3009 28 7 -1.6232 4.1121 -5.0225 29 6 -1.6943 4.6591 -3.8125 30 8 -2.0437 5.8157 -3.7091 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.5647 3.6942 0.7062 37 1 2.2942 2.1153 -1.9977 38 1 0.7604 4.1429 -2.8917 39 1 0.1070 2.6010 -3.4949 40 1 -2.8892 2.7594 -1.6507 41 1 -1.3268 -0.4151 -4.3007 42 1 0.0976 -0.6843 -6.2758 43 1 0.7082 1.2774 -7.6362 44 1 -0.1097 3.5042 -7.0244 45 1 -1.8936 4.6620 -5.7743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411988140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:47 Heat of formation + Delta-G solvation = -79.248589 kcal Electronic energy + Delta-G solvation = -31826.849436 eV Core-core repulsion = 27616.044563 eV Total energy + Delta-G solvation = -4210.804873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95917 -39.46093 -39.16797 -38.59153 -36.06349 -35.44244 -34.76413 -32.29899 -31.81219 -31.51233 -30.46990 -29.96731 -26.92939 -25.36481 -24.93010 -23.16006 -22.98744 -21.00842 -20.94330 -20.35443 -19.45255 -18.31393 -17.96223 -17.53623 -17.03035 -16.64160 -16.18368 -16.04977 -15.55908 -15.07911 -14.78132 -14.62855 -14.54356 -14.40047 -13.91718 -13.85355 -13.75544 -13.38228 -13.17490 -13.03632 -12.70406 -12.30881 -12.19418 -12.07315 -11.82532 -11.54386 -11.08223 -10.96254 -10.86618 -10.76476 -10.71620 -10.38333 -10.24387 -10.16172 -9.88129 -9.41229 -9.27432 -9.16047 -8.75854 -8.68498 -8.63575 -7.82601 -6.59560 -4.41124 0.51726 0.83588 2.01619 2.46151 2.67358 3.06501 3.31989 3.33119 3.36067 3.42553 3.49070 3.75060 4.12127 4.29079 4.36813 4.44506 4.51944 4.66889 4.91618 4.92083 4.97185 5.14712 5.22254 5.46228 5.48936 5.55438 5.64370 5.68519 5.88149 5.99197 6.03472 6.07454 6.18282 6.23964 6.35532 6.59638 6.65940 6.80880 6.82053 6.91833 7.04322 7.08033 7.26666 7.55239 7.59101 7.84690 8.00657 8.22289 8.53591 8.70964 9.10229 9.39014 10.77465 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.003792 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.346190 B = 7382.247567 C = 7530.979327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.117 4.117 3 C 0.244 3.756 4 H 0.054 0.946 5 C -0.608 4.608 6 H 0.056 0.944 7 C 0.031 3.969 8 N -0.890 5.890 9 Si 1.073 2.927 10 H -0.287 1.287 11 H -0.284 1.284 12 H -0.287 1.287 13 N -0.699 5.699 14 C 0.503 3.497 15 O -0.552 6.552 16 C -0.177 4.177 17 C 0.145 3.855 18 H 0.143 0.857 19 N -0.684 5.684 20 C 0.560 3.440 21 O -0.539 6.539 22 C -0.143 4.143 23 C -0.043 4.043 24 C -0.134 4.134 25 C -0.071 4.071 26 C -0.150 4.150 27 C 0.178 3.822 28 N -0.658 5.658 29 C 0.516 3.484 30 O -0.514 6.514 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.027 0.973 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.278 0.722 37 H 0.385 0.615 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.419 0.581 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.136 0.864 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.038 -2.465 -17.112 18.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.156 4.156 3 C 0.144 3.856 4 H 0.072 0.928 5 C -0.647 4.647 6 H 0.075 0.925 7 C -0.178 4.178 8 N -0.523 5.523 9 Si 0.900 3.100 10 H -0.213 1.213 11 H -0.210 1.210 12 H -0.213 1.213 13 N -0.348 5.348 14 C 0.287 3.713 15 O -0.432 6.432 16 C -0.218 4.218 17 C 0.036 3.964 18 H 0.161 0.839 19 N -0.338 5.338 20 C 0.347 3.653 21 O -0.417 6.417 22 C -0.148 4.148 23 C -0.062 4.062 24 C -0.152 4.152 25 C -0.090 4.090 26 C -0.170 4.170 27 C 0.082 3.918 28 N -0.304 5.304 29 C 0.302 3.698 30 O -0.387 6.387 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.218 0.782 38 H 0.123 0.877 39 H 0.119 0.881 40 H 0.258 0.742 41 H 0.157 0.843 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -5.793 -1.525 -15.516 16.632 hybrid contribution -1.113 -0.514 -1.181 1.702 sum -6.906 -2.039 -16.696 18.183 Atomic orbital electron populations 1.21828 0.96910 0.98671 1.02220 1.21819 0.94222 0.99102 1.00418 1.18962 0.94927 0.88587 0.83113 0.92821 1.22175 0.91092 1.04918 1.46477 0.92529 1.25999 1.06653 0.92231 0.92891 1.70690 1.11909 1.27547 1.42128 0.83500 0.73945 0.75411 0.77111 1.21278 1.21002 1.21335 1.47657 1.13375 1.55212 1.18548 1.20091 0.83524 0.79669 0.88027 1.90637 1.50984 1.60527 1.41073 1.22488 0.95682 1.03091 1.00587 1.21116 0.89569 0.89185 0.96546 0.83946 1.45353 1.39579 1.22830 1.25995 1.17611 0.83176 0.81602 0.82889 1.90852 1.36463 1.37572 1.76769 1.19470 1.03318 0.93579 0.98479 1.21323 0.93765 0.95331 0.95801 1.21127 0.99150 0.99706 0.95239 1.21167 0.97262 0.91744 0.98827 1.21199 0.98628 0.98965 0.98231 1.17405 0.94910 0.83193 0.96337 1.42932 1.64521 1.12844 1.10076 1.20789 0.76612 0.87586 0.84811 1.90820 1.45043 1.16802 1.86065 0.92974 0.93161 0.95354 0.93784 0.92373 0.91055 0.78157 0.87652 0.88093 0.74217 0.84336 0.84646 0.84701 0.84660 0.75138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 8.53 37.16 0.32 -2.44 16 2 C -0.12 -2.45 5.58 -26.73 -0.15 -2.59 16 3 C 0.24 5.70 1.72 -69.08 -0.12 5.58 16 4 H 0.05 1.46 6.57 -51.93 -0.34 1.12 16 5 C -0.61 -15.38 8.49 -34.44 -0.29 -15.67 16 6 H 0.06 1.43 7.82 -52.48 -0.41 1.01 16 7 C 0.03 0.82 5.45 -17.82 -0.10 0.72 16 8 N -0.89 -25.13 13.56 55.43 0.75 -24.38 16 9 Si 1.07 23.24 29.91 -169.99 -5.08 18.15 16 10 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 13 N -0.70 -14.03 4.98 -54.93 -0.27 -14.30 16 14 C 0.50 9.37 6.30 -10.99 -0.07 9.30 16 15 O -0.55 -11.66 12.52 5.56 0.07 -11.59 16 16 C -0.18 -2.51 4.74 -27.89 -0.13 -2.64 16 17 C 0.15 1.99 2.66 -69.34 -0.18 1.80 16 18 H 0.14 2.02 7.91 -51.93 -0.41 1.61 16 19 N -0.68 -9.75 4.28 -56.92 -0.24 -9.99 16 20 C 0.56 8.41 6.96 -13.53 -0.09 8.32 16 21 O -0.54 -9.67 17.30 5.28 0.09 -9.57 16 22 C -0.14 -1.75 3.74 -105.17 -0.39 -2.14 16 23 C -0.04 -0.47 9.43 -39.01 -0.37 -0.84 16 24 C -0.13 -1.08 10.03 -39.74 -0.40 -1.48 16 25 C -0.07 -0.48 10.03 -39.67 -0.40 -0.88 16 26 C -0.15 -1.12 9.80 -39.23 -0.38 -1.50 16 27 C 0.18 1.77 4.78 -83.91 -0.40 1.37 16 28 N -0.66 -6.59 4.90 -10.38 -0.05 -6.64 16 29 C 0.52 6.63 6.84 -11.92 -0.08 6.54 16 30 O -0.51 -7.96 17.80 5.57 0.10 -7.86 16 31 H 0.05 1.10 7.89 -51.93 -0.41 0.69 16 32 H 0.05 1.02 5.63 -51.93 -0.29 0.72 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.28 7.99 6.93 -40.82 -0.28 7.71 16 37 H 0.39 7.17 8.59 -40.82 -0.35 6.82 16 38 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.10 1.31 4.41 -51.93 -0.23 1.08 16 40 H 0.42 5.94 8.85 -40.82 -0.36 5.58 16 41 H 0.14 1.58 7.87 -52.48 -0.41 1.17 16 42 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 44 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 45 H 0.41 3.21 8.68 -40.82 -0.35 2.86 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -32.77 369.52 -7.93 -40.70 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: -5.61 Total: 16.46 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -3.25 Total: 3.45 kcal Atomic # 7 Polarization: -55.49 SS G_CDS: 0.18 Total: -55.31 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: 0.26 Total: -29.02 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.08 Total: 18.15 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.77 -7.93 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411988140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.550 kcal (2) G-P(sol) polarization free energy of solvation -32.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds