Wall clock time and date at job start Wed Apr 1 2020 03:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47169 * 2 1 4 4 H 1.09004 * 109.47353 * 54.31962 * 3 2 1 5 5 C 1.50699 * 109.47265 * 174.31956 * 3 2 1 6 6 H 1.08005 * 119.99440 * 25.67734 * 5 3 2 7 7 C 1.37872 * 120.00282 * 205.67452 * 5 3 2 8 8 N 1.31518 * 120.00288 * 353.27481 * 7 5 3 9 9 Si 1.86803 * 120.00051 * 173.27681 * 7 5 3 10 10 H 1.48493 * 109.47085 * 359.97438 * 9 7 5 11 11 H 1.48507 * 109.46991 * 239.99811 * 9 7 5 12 12 H 1.48498 * 109.46973 * 120.00184 * 9 7 5 13 13 N 1.46502 * 109.47411 * 294.32380 * 3 2 1 14 14 C 1.34778 * 120.00055 * 84.99625 * 13 3 2 15 15 O 1.21280 * 119.99847 * 0.02562 * 14 13 3 16 16 C 1.50700 * 119.99890 * 179.97438 * 14 13 3 17 17 C 1.52995 * 109.47065 * 180.02562 * 16 14 13 18 18 H 1.08999 * 109.57247 * 54.75262 * 17 16 14 19 19 N 1.46293 * 109.57004 * 294.37994 * 17 16 14 20 20 C 1.33156 * 121.50393 * 303.11594 * 19 17 16 21 21 O 1.21592 * 117.76105 * 180.76619 * 20 19 17 22 22 C 1.46765 * 124.48242 * 0.79377 * 20 19 17 23 23 C 1.40498 * 117.55926 * 139.65464 * 22 20 19 24 24 C 1.37463 * 120.52317 * 180.41889 * 23 22 20 25 25 C 1.38568 * 120.04893 * 0.04931 * 24 23 22 26 26 C 1.37671 * 120.14587 * 359.87357 * 25 24 23 27 27 C 1.39405 * 123.13129 * 319.93852 * 22 20 19 28 28 N 1.38376 * 123.44792 * 359.39457 * 27 22 20 29 29 C 1.32984 * 125.59164 * 40.96260 * 28 27 22 30 30 O 1.21270 * 119.02947 * 177.52474 * 29 28 27 31 31 H 1.09002 * 109.46818 * 299.99767 * 1 2 3 32 32 H 1.08998 * 109.47087 * 59.99940 * 1 2 3 33 33 H 1.08996 * 109.47072 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.46818 * 240.00233 * 2 1 3 35 35 H 1.08998 * 109.47087 * 120.00060 * 2 1 3 36 36 H 0.96998 * 119.99530 * 354.66598 * 8 7 5 37 37 H 0.96995 * 119.99871 * 265.00146 * 13 3 2 38 38 H 1.09004 * 109.47205 * 300.00728 * 16 14 13 39 39 H 1.09000 * 109.46799 * 60.00358 * 16 14 13 40 40 H 0.97008 * 119.24628 * 123.13514 * 19 17 16 41 41 H 1.08003 * 119.74162 * 0.45784 * 23 22 20 42 42 H 1.08000 * 119.97658 * 180.02562 * 24 23 22 43 43 H 1.07996 * 119.93062 * 179.90502 * 25 24 23 44 44 H 1.08010 * 119.65976 * 180.02562 * 26 25 24 45 45 H 0.96993 * 117.20342 * 220.97330 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5961 1.9849 0.8348 5 6 3.5405 1.4448 0.1406 6 1 4.1146 0.5897 -0.1845 7 6 4.1803 2.5385 0.6842 8 7 3.4994 3.6300 0.9576 9 14 6.0143 2.4700 1.0324 10 1 6.5435 1.1397 0.6385 11 1 6.2513 2.6871 2.4823 12 1 6.7057 3.5288 0.2539 13 7 1.6665 2.0926 -1.2586 14 6 0.4505 2.6590 -1.3895 15 8 -0.3342 2.6309 -0.4653 16 6 0.0665 3.3282 -2.6840 17 6 -1.3537 3.8854 -2.5684 18 1 -1.4188 4.5420 -1.7008 19 7 -2.3028 2.7816 -2.4231 20 6 -2.3802 1.8070 -3.3271 21 8 -3.2033 0.9306 -3.1458 22 6 -1.5398 1.7179 -4.5269 23 6 -1.0629 0.4482 -4.8937 24 6 -0.2637 0.2959 -6.0017 25 6 0.0790 1.3991 -6.7670 26 6 -0.3814 2.6498 -6.4220 27 6 -1.1968 2.8254 -5.3009 28 7 -1.6232 4.1121 -5.0225 29 6 -1.6943 4.6591 -3.8125 30 8 -2.0437 5.8157 -3.7091 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.5647 3.6942 0.7062 37 1 2.2942 2.1153 -1.9977 38 1 0.7604 4.1429 -2.8917 39 1 0.1070 2.6010 -3.4949 40 1 -2.8892 2.7594 -1.6507 41 1 -1.3268 -0.4151 -4.3007 42 1 0.0976 -0.6843 -6.2758 43 1 0.7082 1.2774 -7.6362 44 1 -0.1097 3.5042 -7.0244 45 1 -1.8936 4.6620 -5.7743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411988140.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:46 Heat of formation + Delta-G solvation = -104.088779 kcal Electronic energy + Delta-G solvation = -31827.926587 eV Core-core repulsion = 27616.044563 eV Total energy + Delta-G solvation = -4211.882024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.96747 -40.65061 -40.52833 -39.57892 -37.42922 -36.71256 -36.00529 -34.21237 -33.40435 -32.26949 -31.73658 -30.80227 -28.69433 -26.70572 -25.81129 -24.90343 -23.84170 -22.35696 -21.90934 -21.67905 -21.07432 -19.41357 -19.20645 -18.90423 -18.08893 -17.79228 -17.53177 -17.16381 -16.65683 -16.59592 -15.96499 -15.85515 -15.63436 -15.46756 -15.34984 -15.16077 -14.94969 -14.68190 -14.61105 -14.20660 -14.19443 -13.98270 -13.38916 -12.95020 -12.87891 -12.76521 -12.61111 -12.52442 -12.42647 -12.15662 -11.97960 -11.89045 -11.68246 -11.63393 -11.30075 -10.96006 -10.70251 -10.63227 -10.35404 -10.03443 -9.55995 -9.43316 -8.66596 -6.48339 -0.27353 0.13366 1.00063 1.42975 1.58378 1.63087 1.74835 1.81895 1.83353 2.06778 2.41061 2.56499 2.66271 2.97103 3.19239 3.32950 3.36777 3.72798 3.78466 4.01210 4.11937 4.24836 4.29730 4.32431 4.33350 4.34491 4.38917 4.48351 4.55390 4.85598 4.90516 4.96426 5.05098 5.15998 5.22257 5.28565 5.39446 5.44045 5.47050 5.48984 5.68706 5.77673 5.95113 5.95833 6.02636 6.17277 6.49437 6.62755 6.85050 6.99777 7.39798 7.53760 8.69561 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.003792 C = 0.003717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.346190 B = 7382.247567 C = 7530.979327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.111 4.111 3 C 0.250 3.750 4 H 0.006 0.994 5 C -0.611 4.611 6 H 0.060 0.940 7 C -0.015 4.015 8 N -0.922 5.922 9 Si 1.120 2.880 10 H -0.266 1.266 11 H -0.287 1.287 12 H -0.280 1.280 13 N -0.700 5.700 14 C 0.499 3.501 15 O -0.580 6.580 16 C -0.162 4.162 17 C 0.146 3.854 18 H 0.132 0.868 19 N -0.686 5.686 20 C 0.556 3.444 21 O -0.580 6.580 22 C -0.168 4.168 23 C -0.064 4.064 24 C -0.125 4.125 25 C -0.057 4.057 26 C -0.136 4.136 27 C 0.166 3.834 28 N -0.641 5.641 29 C 0.525 3.475 30 O -0.544 6.544 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.261 0.739 37 H 0.396 0.604 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.414 0.586 41 H 0.122 0.878 42 H 0.160 0.840 43 H 0.175 0.825 44 H 0.168 0.832 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.056 -3.128 -20.672 21.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.149 4.149 3 C 0.149 3.851 4 H 0.024 0.976 5 C -0.650 4.650 6 H 0.078 0.922 7 C -0.217 4.217 8 N -0.557 5.557 9 Si 0.942 3.058 10 H -0.191 1.191 11 H -0.213 1.213 12 H -0.205 1.205 13 N -0.349 5.349 14 C 0.285 3.715 15 O -0.461 6.461 16 C -0.202 4.202 17 C 0.037 3.963 18 H 0.149 0.851 19 N -0.337 5.337 20 C 0.344 3.656 21 O -0.461 6.461 22 C -0.173 4.173 23 C -0.083 4.083 24 C -0.143 4.143 25 C -0.076 4.076 26 C -0.156 4.156 27 C 0.070 3.930 28 N -0.287 5.287 29 C 0.310 3.690 30 O -0.420 6.420 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.230 0.770 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.252 0.748 41 H 0.140 0.860 42 H 0.178 0.822 43 H 0.192 0.808 44 H 0.186 0.814 45 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.805 -2.202 -19.138 19.636 hybrid contribution -1.785 -0.413 -0.135 1.837 sum -5.590 -2.616 -19.273 20.237 Atomic orbital electron populations 1.21668 0.96182 0.99639 1.00794 1.21734 0.94723 0.97550 1.00924 1.18647 0.94013 0.89478 0.83013 0.97554 1.22409 0.91945 1.04673 1.45945 0.92161 1.27319 1.10173 0.91792 0.92425 1.70823 1.11220 1.29010 1.44618 0.82898 0.69564 0.76568 0.76791 1.19057 1.21341 1.20539 1.47150 1.14328 1.55695 1.17696 1.20695 0.82524 0.78948 0.89290 1.90633 1.51647 1.61211 1.42643 1.22366 0.96138 1.03629 0.98081 1.21067 0.89208 0.88850 0.97210 0.85054 1.45436 1.39466 1.23024 1.25819 1.18194 0.82987 0.80775 0.83599 1.90811 1.38330 1.39038 1.77953 1.19376 1.04661 0.95188 0.98104 1.21344 0.95389 0.94327 0.97260 1.21462 0.97470 1.01582 0.93760 1.21654 0.96203 0.90641 0.99075 1.21580 0.96683 1.00576 0.96742 1.17539 0.96004 0.82160 0.97253 1.42719 1.63453 1.13074 1.09478 1.20402 0.76504 0.86882 0.85205 1.90815 1.46810 1.17870 1.86485 0.95149 0.93823 0.93070 0.92184 0.92753 0.92839 0.76986 0.85877 0.86155 0.74833 0.86021 0.82221 0.80777 0.81412 0.73486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.05 8.53 71.98 0.61 -4.44 16 2 C -0.11 -4.62 5.58 30.60 0.17 -4.45 16 3 C 0.25 11.93 1.72 44.24 0.08 12.00 16 4 H 0.01 0.37 6.57 -2.38 -0.02 0.35 16 5 C -0.61 -30.90 8.49 25.60 0.22 -30.69 16 6 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 7 C -0.01 -0.79 5.45 84.65 0.46 -0.32 16 8 N -0.92 -53.30 13.56 21.45 0.29 -53.01 16 9 Si 1.12 46.18 29.91 68.60 2.05 48.23 16 10 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 11 H -0.29 -11.93 7.11 99.48 0.71 -11.23 16 12 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 13 N -0.70 -28.23 4.98 -446.09 -2.22 -30.45 16 14 C 0.50 18.94 6.30 87.66 0.55 19.49 16 15 O -0.58 -25.64 12.52 -3.03 -0.04 -25.67 16 16 C -0.16 -4.47 4.74 29.85 0.14 -4.33 16 17 C 0.15 4.06 2.66 44.19 0.12 4.17 16 18 H 0.13 3.93 7.91 -2.39 -0.02 3.91 16 19 N -0.69 -20.44 4.28 -453.14 -1.94 -22.38 16 20 C 0.56 17.16 6.96 86.72 0.60 17.77 16 21 O -0.58 -21.89 17.30 -4.01 -0.07 -21.96 16 22 C -0.17 -3.95 3.74 -20.22 -0.08 -4.02 16 23 C -0.06 -1.31 9.43 22.64 0.21 -1.10 16 24 C -0.12 -1.54 10.03 22.17 0.22 -1.32 16 25 C -0.06 -0.47 10.03 22.21 0.22 -0.25 16 26 C -0.14 -1.37 9.80 22.50 0.22 -1.15 16 27 C 0.17 2.88 4.78 38.75 0.19 3.07 16 28 N -0.64 -11.52 4.90 -306.16 -1.50 -13.02 16 29 C 0.52 13.10 6.84 87.84 0.60 13.70 16 30 O -0.54 -16.67 17.80 -3.00 -0.05 -16.72 16 31 H 0.03 1.32 7.89 -2.39 -0.02 1.30 16 32 H 0.04 1.79 5.63 -2.39 -0.01 1.78 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.26 15.65 6.93 -92.71 -0.64 15.01 16 37 H 0.40 14.39 8.59 -92.71 -0.80 13.60 16 38 H 0.12 3.01 8.14 -2.39 -0.02 3.00 16 39 H 0.12 2.92 4.41 -2.39 -0.01 2.91 16 40 H 0.41 12.71 8.85 -92.70 -0.82 11.89 16 41 H 0.12 2.83 7.87 -2.91 -0.02 2.81 16 42 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.17 0.19 8.06 -2.91 -0.02 0.16 16 44 H 0.17 0.66 8.06 -2.91 -0.02 0.64 16 45 H 0.42 5.49 8.68 -92.71 -0.80 4.69 16 Total: -1.00 -75.10 369.52 -0.15 -75.25 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: -1.21 Total: 41.57 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 4.54 Total: 18.14 kcal Atomic # 7 Polarization: -113.48 SS G_CDS: -5.37 Total: -118.85 kcal Atomic # 8 Polarization: -64.19 SS G_CDS: -0.16 Total: -64.35 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.05 Total: 48.23 kcal Total: -75.10 -0.15 -75.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411988140.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.843 kcal (2) G-P(sol) polarization free energy of solvation -75.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds