Wall clock time and date at job start Wed Apr 1 2020 03:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 109.47310 * 2 1 4 4 H 1.08998 * 109.47305 * 305.26594 * 3 2 1 5 5 C 1.50699 * 109.47556 * 185.26319 * 3 2 1 6 6 H 1.08004 * 120.00350 * 244.97625 * 5 3 2 7 7 C 1.37873 * 119.99824 * 65.24036 * 5 3 2 8 8 N 1.31517 * 120.00263 * 6.30148 * 7 5 3 9 9 Si 1.86802 * 120.00150 * 186.29848 * 7 5 3 10 10 H 1.48498 * 109.47228 * 93.78483 * 9 7 5 11 11 H 1.48505 * 109.47354 * 213.78916 * 9 7 5 12 12 H 1.48499 * 109.46906 * 333.78590 * 9 7 5 13 13 N 1.46502 * 109.47243 * 65.26198 * 3 2 1 14 14 C 1.34773 * 120.00399 * 275.00257 * 13 3 2 15 15 O 1.21282 * 119.99695 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00449 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47307 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.57349 * 54.74611 * 17 16 14 19 19 N 1.46294 * 109.56963 * 294.37864 * 17 16 14 20 20 C 1.33159 * 121.50159 * 303.11713 * 19 17 16 21 21 O 1.21591 * 117.76026 * 180.77142 * 20 19 17 22 22 C 1.46758 * 124.47963 * 0.79314 * 20 19 17 23 23 C 1.40503 * 117.56038 * 139.66240 * 22 20 19 24 24 C 1.37466 * 120.52529 * 180.42151 * 23 22 20 25 25 C 1.38570 * 120.04732 * 0.03585 * 24 23 22 26 26 C 1.37676 * 120.14831 * 359.88199 * 25 24 23 27 27 C 1.39415 * 123.13693 * 319.93787 * 22 20 19 28 28 N 1.38376 * 123.44085 * 359.40054 * 27 22 20 29 29 C 1.32973 * 125.59408 * 40.95793 * 28 27 22 30 30 O 1.21283 * 119.03070 * 177.52253 * 29 28 27 31 31 H 1.08995 * 109.47395 * 300.00199 * 1 2 3 32 32 H 1.09002 * 109.46976 * 60.00199 * 1 2 3 33 33 H 1.08999 * 109.47497 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46892 * 239.99931 * 2 1 3 35 35 H 1.09008 * 109.46765 * 120.00162 * 2 1 3 36 36 H 0.96992 * 120.00487 * 179.97438 * 8 7 5 37 37 H 0.97005 * 119.99957 * 95.00187 * 13 3 2 38 38 H 1.09002 * 109.46489 * 300.00156 * 16 14 13 39 39 H 1.08992 * 109.47041 * 59.99558 * 16 14 13 40 40 H 0.97001 * 119.24741 * 123.13270 * 19 17 16 41 41 H 1.08001 * 119.74123 * 0.44616 * 23 22 20 42 42 H 1.08000 * 119.97891 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.92816 * 179.90600 * 25 24 23 44 44 H 1.08005 * 119.65532 * 180.02562 * 26 25 24 45 45 H 0.96999 * 117.19618 * 220.97747 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6017 1.9828 -0.8390 5 6 3.5413 1.4444 -0.1303 6 1 4.1532 1.8147 0.6790 7 6 4.1337 0.9787 -1.2849 8 7 3.3903 0.6491 -2.3186 9 14 5.9921 0.8159 -1.3812 10 1 6.3877 -0.5668 -1.0116 11 1 6.4434 1.1066 -2.7659 12 1 6.6225 1.7787 -0.4428 13 7 1.6579 2.0955 1.2545 14 6 0.4411 2.6622 1.3758 15 8 -0.3373 2.6320 0.4463 16 6 0.0478 3.3336 2.6665 17 6 -1.3719 3.8896 2.5401 18 1 -2.0508 3.0924 2.2375 19 7 -1.3924 4.9590 1.5420 20 6 -0.6049 6.0273 1.6507 21 8 -0.6878 6.8819 0.7897 22 6 0.3565 6.2436 2.7382 23 6 1.6060 6.7911 2.4020 24 6 2.5555 7.0112 3.3713 25 6 2.2852 6.6923 4.6925 26 6 1.0651 6.1567 5.0388 27 6 0.0858 5.9275 4.0688 28 7 -1.1163 5.3916 4.4959 29 6 -1.8127 4.4515 3.8639 30 8 -2.8329 4.0345 4.3699 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8901 36 1 3.8070 0.3218 -3.1310 37 1 2.2806 2.1200 1.9978 38 1 0.0824 2.6076 3.4788 39 1 0.7401 4.1484 2.8778 40 1 -1.9934 4.8883 0.7839 41 1 1.8221 7.0413 1.3738 42 1 3.5129 7.4328 3.1030 43 1 3.0331 6.8647 5.4522 44 1 0.8627 5.9115 6.0710 45 1 -1.4825 5.7310 5.3275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411988144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:50 Heat of formation + Delta-G solvation = -71.673629 kcal Electronic energy + Delta-G solvation = -31419.677229 eV Core-core repulsion = 27209.200831 eV Total energy + Delta-G solvation = -4210.476398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97091 -39.46843 -39.20398 -38.59032 -36.04372 -35.39336 -34.73231 -32.46394 -31.53879 -31.39536 -30.46214 -29.97440 -27.19330 -25.47436 -24.92320 -23.15062 -22.94958 -21.00493 -20.93658 -20.26423 -19.41705 -18.32884 -17.96744 -17.34080 -16.89628 -16.67754 -16.10218 -15.87027 -15.52015 -15.14271 -14.95820 -14.69993 -14.58278 -14.39905 -14.22584 -13.83202 -13.69636 -13.31948 -13.07485 -12.80209 -12.57291 -12.19239 -12.10087 -11.79266 -11.67022 -11.41637 -11.34784 -11.04759 -10.96746 -10.82796 -10.73387 -10.38678 -10.25117 -10.14676 -9.74003 -9.39779 -9.26374 -9.13040 -9.03944 -8.65861 -8.54120 -7.91327 -6.17726 -4.24746 0.53014 0.85345 1.98526 2.46526 2.67027 3.06640 3.21370 3.26164 3.29350 3.30416 3.42680 3.69155 4.11154 4.22324 4.36555 4.45519 4.46846 4.68692 4.87931 4.93119 4.99882 5.14392 5.15984 5.34785 5.47347 5.51929 5.56630 5.66124 5.90703 6.10439 6.17286 6.30818 6.34578 6.37168 6.55423 6.61203 6.80742 6.93946 7.08579 7.11843 7.27040 7.35519 7.52089 7.55188 7.66077 7.79853 8.02642 8.04251 8.57845 8.73583 9.03248 9.41810 10.90063 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.003834 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.204737 B = 7301.170562 C = 8470.421908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.270 3.730 4 H 0.055 0.945 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.880 5.880 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.704 5.704 14 C 0.507 3.493 15 O -0.541 6.541 16 C -0.176 4.176 17 C 0.146 3.854 18 H 0.143 0.857 19 N -0.686 5.686 20 C 0.560 3.440 21 O -0.536 6.536 22 C -0.142 4.142 23 C -0.041 4.041 24 C -0.132 4.132 25 C -0.072 4.072 26 C -0.151 4.151 27 C 0.175 3.825 28 N -0.657 5.657 29 C 0.516 3.484 30 O -0.516 6.516 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.023 0.977 34 H 0.082 0.918 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.388 0.612 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.419 0.581 41 H 0.141 0.859 42 H 0.136 0.864 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.280 9.971 16.747 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.168 3.832 4 H 0.073 0.927 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.517 5.517 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.352 5.352 14 C 0.291 3.709 15 O -0.420 6.420 16 C -0.217 4.217 17 C 0.036 3.964 18 H 0.160 0.840 19 N -0.339 5.339 20 C 0.347 3.653 21 O -0.413 6.413 22 C -0.148 4.148 23 C -0.060 4.060 24 C -0.150 4.150 25 C -0.090 4.090 26 C -0.171 4.171 27 C 0.079 3.921 28 N -0.303 5.303 29 C 0.302 3.698 30 O -0.389 6.389 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.220 0.780 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.259 0.741 41 H 0.159 0.841 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.153 0.847 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -4.280 9.956 15.616 19.008 hybrid contribution 1.073 -0.159 0.410 1.159 sum -3.207 9.797 16.027 19.056 Atomic orbital electron populations 1.21835 0.98069 0.98181 1.01380 1.21856 0.92924 0.99855 1.01344 1.18802 0.94439 0.88949 0.80964 0.92690 1.21179 0.90582 1.43797 1.01948 0.92138 1.24880 0.98446 0.95048 0.95106 1.69961 1.35351 1.43045 1.03302 0.86501 0.85051 0.78443 0.77491 1.20553 1.21108 1.19842 1.46451 1.14306 1.55775 1.18628 1.19865 0.83262 0.79480 0.88319 1.90680 1.51123 1.59735 1.40470 1.22448 0.96310 1.02941 1.00037 1.21092 0.99363 0.91178 0.84760 0.83968 1.45351 1.42193 1.19426 1.26980 1.17615 0.80201 0.81866 0.85618 1.90861 1.67756 1.42179 1.40529 1.19477 0.97440 1.06116 0.91762 1.21372 0.90460 0.93123 1.01066 1.21153 0.99969 1.01268 0.92659 1.21172 0.95920 0.95281 0.96663 1.21174 0.92962 1.03760 0.99193 1.17393 0.86088 0.95983 0.92636 1.42920 1.21401 1.38608 1.27349 1.20771 0.83364 0.78704 0.86965 1.90822 1.23572 1.58106 1.66443 0.94147 0.92967 0.95794 0.89909 0.94812 0.92543 0.78041 0.87633 0.87803 0.74125 0.84138 0.84563 0.84725 0.84720 0.75140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.52 37.16 0.32 -2.56 16 2 C -0.12 -2.78 5.49 -26.74 -0.15 -2.92 16 3 C 0.27 6.44 2.11 -69.09 -0.15 6.29 16 4 H 0.06 1.56 7.55 -51.93 -0.39 1.16 16 5 C -0.54 -13.61 8.67 -34.44 -0.30 -13.91 16 6 H 0.06 1.47 7.73 -52.48 -0.41 1.06 16 7 C 0.07 1.81 5.21 -17.82 -0.09 1.72 16 8 N -0.88 -24.33 11.99 55.43 0.66 -23.67 16 9 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 N -0.70 -13.34 5.02 -54.94 -0.28 -13.62 16 14 C 0.51 8.88 6.28 -10.99 -0.07 8.81 16 15 O -0.54 -11.11 12.52 5.56 0.07 -11.04 16 16 C -0.18 -2.23 4.74 -27.88 -0.13 -2.36 16 17 C 0.15 1.83 2.66 -69.34 -0.18 1.65 16 18 H 0.14 1.79 7.91 -51.93 -0.41 1.38 16 19 N -0.69 -9.54 4.28 -56.92 -0.24 -9.79 16 20 C 0.56 8.43 6.96 -13.54 -0.09 8.34 16 21 O -0.54 -9.81 17.30 5.29 0.09 -9.72 16 22 C -0.14 -1.73 3.74 -105.16 -0.39 -2.12 16 23 C -0.04 -0.46 9.43 -39.01 -0.37 -0.83 16 24 C -0.13 -1.09 10.03 -39.74 -0.40 -1.49 16 25 C -0.07 -0.47 10.03 -39.66 -0.40 -0.87 16 26 C -0.15 -1.05 9.80 -39.23 -0.38 -1.43 16 27 C 0.18 1.66 4.78 -83.91 -0.40 1.25 16 28 N -0.66 -6.07 4.90 -10.39 -0.05 -6.12 16 29 C 0.52 6.08 6.84 -11.93 -0.08 6.00 16 30 O -0.52 -7.39 17.80 5.56 0.10 -7.29 16 31 H 0.04 0.80 5.64 -51.93 -0.29 0.51 16 32 H 0.05 1.18 7.86 -51.93 -0.41 0.77 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 2.13 6.65 -51.93 -0.35 1.78 16 35 H 0.03 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.39 6.36 8.53 -40.82 -0.35 6.01 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.10 1.25 4.41 -51.93 -0.23 1.02 16 40 H 0.42 5.84 8.85 -40.82 -0.36 5.48 16 41 H 0.14 1.69 7.87 -52.49 -0.41 1.28 16 42 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 43 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 44 H 0.13 0.60 8.06 -52.48 -0.42 0.18 16 45 H 0.41 2.91 8.68 -40.82 -0.35 2.56 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -33.08 368.54 -8.02 -41.10 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -5.63 Total: 13.96 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -3.27 Total: 5.56 kcal Atomic # 7 Polarization: -53.28 SS G_CDS: 0.09 Total: -53.19 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: 0.26 Total: -28.05 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.08 -8.02 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411988144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.579 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds