Wall clock time and date at job start Wed Apr 1 2020 03:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52990 * 109.47310 * 2 1 4 4 H 1.08998 * 109.47305 * 305.26594 * 3 2 1 5 5 C 1.50699 * 109.47556 * 185.26319 * 3 2 1 6 6 H 1.08004 * 120.00350 * 244.97625 * 5 3 2 7 7 C 1.37873 * 119.99824 * 65.24036 * 5 3 2 8 8 N 1.31517 * 120.00263 * 6.30148 * 7 5 3 9 9 Si 1.86802 * 120.00150 * 186.29848 * 7 5 3 10 10 H 1.48498 * 109.47228 * 93.78483 * 9 7 5 11 11 H 1.48505 * 109.47354 * 213.78916 * 9 7 5 12 12 H 1.48499 * 109.46906 * 333.78590 * 9 7 5 13 13 N 1.46502 * 109.47243 * 65.26198 * 3 2 1 14 14 C 1.34773 * 120.00399 * 275.00257 * 13 3 2 15 15 O 1.21282 * 119.99695 * 359.97438 * 14 13 3 16 16 C 1.50703 * 120.00449 * 179.97438 * 14 13 3 17 17 C 1.52996 * 109.47307 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.57349 * 54.74611 * 17 16 14 19 19 N 1.46294 * 109.56963 * 294.37864 * 17 16 14 20 20 C 1.33159 * 121.50159 * 303.11713 * 19 17 16 21 21 O 1.21591 * 117.76026 * 180.77142 * 20 19 17 22 22 C 1.46758 * 124.47963 * 0.79314 * 20 19 17 23 23 C 1.40503 * 117.56038 * 139.66240 * 22 20 19 24 24 C 1.37466 * 120.52529 * 180.42151 * 23 22 20 25 25 C 1.38570 * 120.04732 * 0.03585 * 24 23 22 26 26 C 1.37676 * 120.14831 * 359.88199 * 25 24 23 27 27 C 1.39415 * 123.13693 * 319.93787 * 22 20 19 28 28 N 1.38376 * 123.44085 * 359.40054 * 27 22 20 29 29 C 1.32973 * 125.59408 * 40.95793 * 28 27 22 30 30 O 1.21283 * 119.03070 * 177.52253 * 29 28 27 31 31 H 1.08995 * 109.47395 * 300.00199 * 1 2 3 32 32 H 1.09002 * 109.46976 * 60.00199 * 1 2 3 33 33 H 1.08999 * 109.47497 * 180.02562 * 1 2 3 34 34 H 1.08997 * 109.46892 * 239.99931 * 2 1 3 35 35 H 1.09008 * 109.46765 * 120.00162 * 2 1 3 36 36 H 0.96992 * 120.00487 * 179.97438 * 8 7 5 37 37 H 0.97005 * 119.99957 * 95.00187 * 13 3 2 38 38 H 1.09002 * 109.46489 * 300.00156 * 16 14 13 39 39 H 1.08992 * 109.47041 * 59.99558 * 16 14 13 40 40 H 0.97001 * 119.24741 * 123.13270 * 19 17 16 41 41 H 1.08001 * 119.74123 * 0.44616 * 23 22 20 42 42 H 1.08000 * 119.97891 * 180.02562 * 24 23 22 43 43 H 1.07999 * 119.92816 * 179.90600 * 25 24 23 44 44 H 1.08005 * 119.65532 * 180.02562 * 26 25 24 45 45 H 0.96999 * 117.19618 * 220.97747 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6017 1.9828 -0.8390 5 6 3.5413 1.4444 -0.1303 6 1 4.1532 1.8147 0.6790 7 6 4.1337 0.9787 -1.2849 8 7 3.3903 0.6491 -2.3186 9 14 5.9921 0.8159 -1.3812 10 1 6.3877 -0.5668 -1.0116 11 1 6.4434 1.1066 -2.7659 12 1 6.6225 1.7787 -0.4428 13 7 1.6579 2.0955 1.2545 14 6 0.4411 2.6622 1.3758 15 8 -0.3373 2.6320 0.4463 16 6 0.0478 3.3336 2.6665 17 6 -1.3719 3.8896 2.5401 18 1 -2.0508 3.0924 2.2375 19 7 -1.3924 4.9590 1.5420 20 6 -0.6049 6.0273 1.6507 21 8 -0.6878 6.8819 0.7897 22 6 0.3565 6.2436 2.7382 23 6 1.6060 6.7911 2.4020 24 6 2.5555 7.0112 3.3713 25 6 2.2852 6.6923 4.6925 26 6 1.0651 6.1567 5.0388 27 6 0.0858 5.9275 4.0688 28 7 -1.1163 5.3916 4.4959 29 6 -1.8127 4.4515 3.8639 30 8 -2.8329 4.0345 4.3699 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8901 36 1 3.8070 0.3218 -3.1310 37 1 2.2806 2.1200 1.9978 38 1 0.0824 2.6076 3.4788 39 1 0.7401 4.1484 2.8778 40 1 -1.9934 4.8883 0.7839 41 1 1.8221 7.0413 1.3738 42 1 3.5129 7.4328 3.1030 43 1 3.0331 6.8647 5.4522 44 1 0.8627 5.9115 6.0710 45 1 -1.4825 5.7310 5.3275 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411988144.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:49 Heat of formation + Delta-G solvation = -97.262294 kcal Electronic energy + Delta-G solvation = -31420.786836 eV Core-core repulsion = 27209.200831 eV Total energy + Delta-G solvation = -4211.586006 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.92596 -40.61615 -40.48955 -39.54922 -37.31917 -36.64389 -35.96973 -34.28333 -33.08539 -32.24024 -31.73386 -30.77652 -28.98676 -26.73105 -25.78393 -24.84437 -23.81050 -22.28600 -21.86355 -21.58333 -21.06505 -19.28084 -18.95013 -18.77987 -17.99379 -17.75876 -17.31737 -17.13372 -16.97856 -16.48759 -16.14827 -15.93095 -15.78680 -15.41606 -15.32083 -14.81741 -14.75048 -14.63294 -14.51839 -14.14727 -13.93214 -13.51448 -13.31484 -13.23155 -12.90959 -12.87917 -12.67746 -12.60185 -12.40343 -12.16884 -12.06697 -11.93408 -11.62607 -11.58782 -11.28036 -11.05269 -10.73074 -10.52607 -10.35143 -10.00577 -9.60832 -9.39930 -8.17100 -6.31149 -0.24520 0.16281 1.04910 1.45456 1.45758 1.45975 1.56188 1.79460 1.84484 2.10743 2.34608 2.53176 2.69365 3.06921 3.15244 3.27070 3.39723 3.75874 3.82529 4.04361 4.18321 4.32961 4.36105 4.37137 4.44652 4.49919 4.52868 4.57328 4.76041 4.88507 4.99572 5.08263 5.25749 5.27217 5.43565 5.44312 5.47482 5.53228 5.56490 5.63296 5.71957 5.78201 5.94035 5.98275 5.99773 6.11108 6.67955 6.78652 6.88251 6.99263 7.35837 7.59702 8.91018 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.003834 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.204737 B = 7301.170562 C = 8470.421908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.279 3.721 4 H -0.001 1.001 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.259 1.259 13 N -0.702 5.702 14 C 0.503 3.497 15 O -0.576 6.576 16 C -0.160 4.160 17 C 0.144 3.856 18 H 0.139 0.861 19 N -0.688 5.688 20 C 0.553 3.447 21 O -0.585 6.585 22 C -0.167 4.167 23 C -0.067 4.067 24 C -0.126 4.126 25 C -0.056 4.056 26 C -0.133 4.133 27 C 0.170 3.830 28 N -0.641 5.641 29 C 0.526 3.474 30 O -0.542 6.542 31 H 0.051 0.949 32 H 0.023 0.977 33 H 0.045 0.955 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.263 0.737 37 H 0.404 0.596 38 H 0.141 0.859 39 H 0.117 0.883 40 H 0.414 0.586 41 H 0.115 0.885 42 H 0.156 0.844 43 H 0.175 0.825 44 H 0.173 0.827 45 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.293 10.195 21.248 23.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.153 4.153 3 C 0.176 3.824 4 H 0.017 0.983 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.557 5.557 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.218 1.218 12 H -0.183 1.183 13 N -0.351 5.351 14 C 0.289 3.711 15 O -0.456 6.456 16 C -0.201 4.201 17 C 0.035 3.965 18 H 0.157 0.843 19 N -0.340 5.340 20 C 0.342 3.658 21 O -0.466 6.466 22 C -0.172 4.172 23 C -0.086 4.086 24 C -0.144 4.144 25 C -0.075 4.075 26 C -0.152 4.152 27 C 0.074 3.926 28 N -0.287 5.287 29 C 0.312 3.688 30 O -0.418 6.418 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.238 0.762 38 H 0.159 0.841 39 H 0.135 0.865 40 H 0.251 0.749 41 H 0.133 0.867 42 H 0.174 0.826 43 H 0.193 0.807 44 H 0.190 0.810 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -2.275 10.193 20.197 22.737 hybrid contribution 0.462 -0.151 -0.985 1.099 sum -1.813 10.041 19.211 21.753 Atomic orbital electron populations 1.21677 0.96627 0.99256 1.00536 1.21700 0.94122 0.99038 1.00406 1.18322 0.93656 0.89024 0.81410 0.98343 1.21572 0.91484 1.43072 1.02195 0.90823 1.25759 1.03024 0.94821 0.94809 1.70121 1.37313 1.44319 1.03909 0.85441 0.79513 0.78810 0.77230 1.19856 1.21759 1.18340 1.46175 1.15393 1.56021 1.17521 1.20648 0.82197 0.78599 0.89642 1.90680 1.52000 1.60664 1.42269 1.22366 0.96352 1.03560 0.97775 1.21160 0.99401 0.90777 0.85201 0.84301 1.45473 1.41798 1.19662 1.27067 1.18266 0.80278 0.81246 0.86049 1.90815 1.69312 1.43822 1.42682 1.19338 0.97135 1.08697 0.92032 1.21330 0.91428 0.94918 1.00971 1.21440 0.99807 1.00216 0.92951 1.21650 0.96448 0.92942 0.96438 1.21580 0.91889 1.01659 1.00082 1.17480 0.86706 0.96417 0.92012 1.42719 1.21125 1.37465 1.27380 1.20375 0.83119 0.79091 0.86263 1.90823 1.24667 1.59406 1.66893 0.93002 0.95746 0.93636 0.93106 0.93246 0.92803 0.76171 0.84131 0.86494 0.74851 0.86692 0.82647 0.80717 0.80987 0.73421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.52 71.98 0.61 -4.64 16 2 C -0.11 -5.30 5.49 30.59 0.17 -5.13 16 3 C 0.28 13.66 2.11 44.24 0.09 13.75 16 4 H 0.00 -0.08 7.55 -2.39 -0.02 -0.10 16 5 C -0.55 -27.73 8.67 25.60 0.22 -27.51 16 6 H 0.07 3.47 7.73 -2.91 -0.02 3.44 16 7 C 0.02 0.85 5.21 84.65 0.44 1.29 16 8 N -0.92 -52.65 11.99 21.45 0.26 -52.39 16 9 Si 0.97 41.14 29.54 68.60 2.03 43.17 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 12 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 13 N -0.70 -26.31 5.02 -446.11 -2.24 -28.55 16 14 C 0.50 17.57 6.28 87.66 0.55 18.12 16 15 O -0.58 -24.54 12.52 -3.03 -0.04 -24.58 16 16 C -0.16 -3.77 4.74 29.85 0.14 -3.63 16 17 C 0.14 3.54 2.66 44.19 0.12 3.66 16 18 H 0.14 3.52 7.91 -2.39 -0.02 3.50 16 19 N -0.69 -20.08 4.28 -453.16 -1.94 -22.02 16 20 C 0.55 17.46 6.96 86.72 0.60 18.06 16 21 O -0.58 -23.17 17.30 -4.00 -0.07 -23.24 16 22 C -0.17 -3.94 3.74 -20.22 -0.08 -4.02 16 23 C -0.07 -1.48 9.43 22.64 0.21 -1.27 16 24 C -0.13 -1.69 10.03 22.17 0.22 -1.47 16 25 C -0.06 -0.44 10.03 22.22 0.22 -0.22 16 26 C -0.13 -1.14 9.80 22.50 0.22 -0.92 16 27 C 0.17 2.71 4.78 38.75 0.19 2.90 16 28 N -0.64 -10.01 4.90 -306.16 -1.50 -11.51 16 29 C 0.53 11.49 6.84 87.84 0.60 12.09 16 30 O -0.54 -14.72 17.80 -3.04 -0.05 -14.77 16 31 H 0.05 2.05 5.64 -2.39 -0.01 2.04 16 32 H 0.02 1.13 7.86 -2.39 -0.02 1.11 16 33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 2.70 6.65 -2.39 -0.02 2.68 16 35 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 37 H 0.40 12.46 8.53 -92.70 -0.79 11.67 16 38 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.12 2.55 4.41 -2.39 -0.01 2.54 16 40 H 0.41 12.57 8.85 -92.71 -0.82 11.75 16 41 H 0.11 3.03 7.87 -2.91 -0.02 3.01 16 42 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 43 H 0.18 0.11 8.06 -2.91 -0.02 0.08 16 44 H 0.17 0.30 8.06 -2.91 -0.02 0.28 16 45 H 0.43 4.50 8.68 -92.71 -0.80 3.70 16 Total: -1.00 -77.78 368.54 -0.35 -78.13 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -1.33 Total: 34.71 kcal Atomic # 6 Polarization: 16.53 SS G_CDS: 4.54 Total: 21.07 kcal Atomic # 7 Polarization: -109.05 SS G_CDS: -5.42 Total: -114.47 kcal Atomic # 8 Polarization: -62.43 SS G_CDS: -0.16 Total: -62.59 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -77.78 -0.35 -78.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411988144.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.134 kcal (2) G-P(sol) polarization free energy of solvation -77.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds