Wall clock time and date at job start Wed Apr 1 2020 02:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47304 * 2 1 4 4 C 1.53001 * 109.47285 * 240.00290 * 2 1 3 5 5 C 1.53000 * 109.47226 * 119.99811 * 2 1 3 6 6 H 1.09001 * 109.46830 * 179.97438 * 5 2 1 7 7 N 1.46499 * 109.46824 * 60.00399 * 5 2 1 8 8 C 1.34775 * 120.00469 * 84.99924 * 7 5 2 9 9 O 1.21591 * 119.99732 * 359.97438 * 8 7 5 10 10 C 1.47639 * 120.00322 * 179.97438 * 8 7 5 11 11 C 1.40019 * 119.89638 * 179.97438 * 10 8 7 12 12 C 1.36318 * 120.10482 * 180.23846 * 11 10 8 13 13 C 1.40884 * 119.89257 * 359.51625 * 12 11 10 14 14 C 1.41105 * 120.10547 * 180.21516 * 13 12 11 15 15 H 1.08007 * 120.00152 * 204.80045 * 14 13 12 16 16 C 1.40225 * 120.00158 * 24.80074 * 14 13 12 17 17 N 1.30652 * 119.99557 * 17.73396 * 16 14 13 18 18 Si 1.86800 * 120.00613 * 197.73349 * 16 14 13 19 19 H 1.48499 * 109.47055 * 89.99717 * 18 16 14 20 20 H 1.48498 * 109.47654 * 210.00290 * 18 16 14 21 21 H 1.48504 * 109.46638 * 330.00266 * 18 16 14 22 22 C 1.40892 * 119.79584 * 0.47930 * 13 12 11 23 23 C 1.36326 * 119.88776 * 359.75467 * 22 13 12 24 24 C 1.50696 * 109.47276 * 299.99971 * 5 2 1 25 25 N 1.31691 * 126.18246 * 304.69032 * 24 5 2 26 26 C 1.34344 * 105.81920 * 179.85725 * 25 24 5 27 27 O 1.21899 * 126.57231 * 180.18522 * 26 25 24 28 28 O 1.34138 * 106.86487 * 0.40125 * 26 25 24 29 29 N 1.21337 * 109.55117 * 359.74889 * 28 26 25 30 30 H 0.97003 * 124.94221 * 180.02562 * 29 28 26 31 31 H 1.09003 * 109.46962 * 299.99887 * 1 2 3 32 32 H 1.08997 * 109.47366 * 59.99779 * 1 2 3 33 33 H 1.09000 * 109.47120 * 179.97438 * 1 2 3 34 34 H 1.08991 * 109.47534 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47089 * 300.00390 * 3 2 1 36 36 H 1.09003 * 109.47019 * 60.00147 * 3 2 1 37 37 H 1.09000 * 109.46816 * 299.99910 * 4 2 1 38 38 H 1.08997 * 109.46975 * 59.99691 * 4 2 1 39 39 H 1.08995 * 109.46991 * 180.02562 * 4 2 1 40 40 H 0.97003 * 119.99859 * 264.99308 * 7 5 2 41 41 H 1.07994 * 119.94660 * 359.95261 * 11 10 8 42 42 H 1.07995 * 120.05246 * 179.74740 * 12 11 10 43 43 H 0.97005 * 119.99384 * 179.97438 * 17 16 14 44 44 H 1.07999 * 120.05803 * 179.73191 * 22 13 12 45 45 H 1.07997 * 119.94151 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 1 3.1300 -0.7216 1.2490 7 7 1.5517 -2.1024 1.2492 8 6 2.2285 -3.0565 0.5797 9 8 3.2441 -2.7707 -0.0246 10 6 1.7367 -4.4486 0.5802 11 6 2.4413 -5.4379 -0.1165 12 6 1.9884 -6.7236 -0.1230 13 6 0.8150 -7.0582 0.5812 14 6 0.3446 -8.3886 0.5813 15 1 -0.7025 -8.5912 0.7517 16 6 1.2367 -9.4477 0.3602 17 7 2.5221 -9.2585 0.4978 18 14 0.5873 -11.1288 -0.1312 19 1 0.5070 -11.2151 -1.6115 20 1 1.5034 -12.1813 0.3770 21 1 -0.7648 -11.3264 0.4502 22 6 0.1094 -6.0593 1.2809 23 6 0.5675 -4.7753 1.2776 24 6 1.5377 -0.0108 2.4797 25 7 1.7070 1.2636 2.7652 26 6 1.0960 1.4588 3.9456 27 8 1.0200 2.5093 4.5592 28 8 0.5898 0.2750 4.3222 29 7 0.8448 -0.5617 3.4813 30 1 0.5835 -1.4947 3.5287 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6767 -1.7488 -1.2493 38 1 1.6766 -0.2073 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 0.7413 -2.3304 1.7311 41 1 3.3424 -5.1810 -0.6534 42 1 2.5302 -7.4852 -0.6640 43 1 3.1391 -9.9913 0.3452 44 1 -0.7930 -6.3103 1.8186 45 1 0.0271 -4.0089 1.8133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418162392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:35 Heat of formation + Delta-G solvation = 21.988914 kcal Electronic energy + Delta-G solvation = -30505.637124 eV Core-core repulsion = 26299.222238 eV Total energy + Delta-G solvation = -4206.414885 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.93562 -40.29967 -38.24599 -38.15114 -37.03146 -35.43911 -34.19031 -33.90631 -32.32781 -30.38084 -29.77356 -28.04620 -27.40287 -27.06214 -25.77921 -24.30737 -22.81867 -22.04425 -21.07732 -20.73617 -19.88859 -19.21555 -18.69958 -17.73033 -17.50347 -16.57961 -16.29973 -15.87145 -15.61975 -15.44077 -14.75554 -14.29897 -14.18607 -13.93589 -13.93080 -13.60718 -13.36149 -13.03760 -12.86225 -12.44380 -12.36713 -12.17259 -12.04765 -11.96580 -11.85542 -11.56927 -11.53271 -11.38810 -11.32309 -11.09822 -11.00855 -10.83092 -10.77008 -10.39090 -10.22926 -9.72907 -9.51311 -9.39400 -9.31614 -9.12931 -7.90706 -7.78237 -7.19284 -4.78661 0.63052 1.42733 1.98399 2.58829 2.74392 2.78088 2.84063 2.87720 2.88646 3.01958 3.56161 3.62515 3.83754 4.29076 4.36434 4.53757 4.69710 4.92814 5.18187 5.29962 5.37798 5.38408 5.56732 5.64261 5.68264 5.71983 5.80092 5.89996 5.92383 6.00610 6.08336 6.10353 6.19850 6.28788 6.46360 6.56533 6.63151 6.66563 6.83613 6.89121 7.23205 7.29963 7.38874 7.43180 7.64327 7.67913 7.81481 7.90127 8.24885 8.44731 8.55855 8.67803 9.72141 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.002538 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.520366 B =11031.546478 C =11849.358439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.066 4.066 3 C -0.156 4.156 4 C -0.132 4.132 5 C 0.225 3.775 6 H 0.137 0.863 7 N -0.749 5.749 8 C 0.581 3.419 9 O -0.551 6.551 10 C -0.289 4.289 11 C -0.032 4.032 12 C -0.182 4.182 13 C 0.129 3.871 14 C -0.437 4.437 15 H 0.086 0.914 16 C 0.073 3.927 17 N -0.764 5.764 18 Si 0.915 3.085 19 H -0.263 1.263 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.233 4.233 23 C -0.050 4.050 24 C 0.358 3.642 25 N -0.538 5.538 26 C 0.556 3.444 27 O -0.472 6.472 28 O -0.081 6.081 29 N -0.498 5.498 30 H 0.470 0.530 31 H 0.045 0.955 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.089 0.911 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.391 0.609 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.289 0.711 44 H 0.097 0.903 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.494 8.457 -0.043 9.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.214 4.214 4 C -0.189 4.189 5 C 0.117 3.883 6 H 0.155 0.845 7 N -0.405 5.405 8 C 0.377 3.623 9 O -0.430 6.430 10 C -0.294 4.294 11 C -0.051 4.051 12 C -0.202 4.202 13 C 0.125 3.875 14 C -0.464 4.464 15 H 0.104 0.896 16 C -0.150 4.150 17 N -0.386 5.386 18 Si 0.738 3.262 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.253 4.253 23 C -0.069 4.069 24 C 0.089 3.911 25 N -0.300 5.300 26 C 0.306 3.694 27 O -0.352 6.352 28 O -0.103 6.103 29 N -0.165 5.165 30 H 0.324 0.676 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.226 0.774 41 H 0.120 0.880 42 H 0.139 0.861 43 H 0.101 0.899 44 H 0.116 0.884 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.398 9.735 -0.090 10.026 hybrid contribution -1.173 -1.736 0.760 2.229 sum -3.571 7.998 0.670 8.785 Atomic orbital electron populations 1.21942 0.94316 1.02168 1.01919 1.20898 0.96029 0.96361 0.93510 1.22163 1.01618 0.94021 1.03585 1.21907 1.02152 1.00346 0.94502 1.19791 1.01449 0.81042 0.85977 0.84530 1.46024 1.30268 1.06678 1.57495 1.18527 0.82319 0.84907 0.76544 1.90703 1.25452 1.82614 1.44274 1.18733 1.02900 0.91081 1.16673 1.20458 0.96835 0.92446 0.95357 1.21031 1.00232 0.94897 1.03999 1.17794 0.90570 0.92584 0.86529 1.19913 0.96289 0.90630 1.39559 0.89576 1.26140 0.94421 1.02232 0.92179 1.69736 1.03447 1.34959 1.30450 0.86179 0.80181 0.79690 0.80126 1.18778 1.19881 1.18231 1.20666 1.03676 0.93529 1.07407 1.20272 0.94366 0.95559 0.96697 1.25670 0.84923 0.90236 0.90303 1.73355 1.30969 1.11057 1.14628 1.22051 0.79813 0.82677 0.84909 1.91176 1.62265 1.21429 1.60361 1.85260 1.69296 1.20154 1.35595 1.42492 1.50754 1.08920 1.14309 0.67589 0.93566 0.91651 0.91947 0.92266 0.92547 0.89274 0.91692 0.92971 0.91331 0.77380 0.87994 0.86105 0.89922 0.88437 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.07 37.16 0.30 -1.09 16 2 C -0.07 -0.69 0.62 -154.51 -0.10 -0.78 16 3 C -0.16 -1.60 8.08 37.16 0.30 -1.30 16 4 C -0.13 -1.59 7.00 37.16 0.26 -1.33 16 5 C 0.22 2.39 2.09 -69.08 -0.14 2.25 16 6 H 0.14 1.60 7.58 -51.93 -0.39 1.21 16 7 N -0.75 -8.47 4.04 -55.94 -0.23 -8.70 16 8 C 0.58 9.33 6.12 -12.42 -0.08 9.26 16 9 O -0.55 -10.16 13.44 5.29 0.07 -10.09 16 10 C -0.29 -5.41 5.89 -104.73 -0.62 -6.02 16 11 C -0.03 -0.67 9.52 -39.61 -0.38 -1.05 16 12 C -0.18 -4.17 8.63 -39.27 -0.34 -4.51 16 13 C 0.13 2.94 5.57 -106.80 -0.60 2.34 16 14 C -0.44 -9.92 9.04 -37.75 -0.34 -10.26 16 15 H 0.09 1.85 7.91 -52.48 -0.42 1.44 16 16 C 0.07 1.58 5.14 -17.31 -0.09 1.49 16 17 N -0.76 -17.24 10.96 55.56 0.61 -16.63 16 18 Si 0.91 16.10 29.60 -169.99 -5.03 11.07 16 19 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 20 H -0.27 -4.76 7.11 56.52 0.40 -4.35 16 21 H -0.26 -4.50 7.11 56.52 0.40 -4.10 16 22 C -0.23 -4.67 9.73 -39.27 -0.38 -5.06 16 23 C -0.05 -0.86 9.47 -39.61 -0.38 -1.24 16 24 C 0.36 3.66 5.88 -155.65 -0.92 2.75 16 25 N -0.54 -6.87 8.69 -14.53 -0.13 -7.00 16 26 C 0.56 7.93 9.62 53.44 0.51 8.45 16 27 O -0.47 -8.32 18.07 -19.16 -0.35 -8.67 16 28 O -0.08 -0.90 11.35 -7.37 -0.08 -0.99 16 29 N -0.50 -4.24 6.58 32.12 0.21 -4.03 16 30 H 0.47 2.53 7.63 -40.82 -0.31 2.21 16 31 H 0.05 0.43 7.22 -51.93 -0.37 0.06 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.60 7.61 -51.93 -0.39 0.20 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.02 5.32 -51.93 -0.28 0.74 16 37 H 0.06 0.93 5.77 -51.93 -0.30 0.63 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.91 7.52 -51.93 -0.39 0.52 16 40 H 0.39 3.50 5.29 -40.82 -0.22 3.28 16 41 H 0.10 2.13 7.63 -52.49 -0.40 1.73 16 42 H 0.12 2.88 6.16 -52.49 -0.32 2.55 16 43 H 0.29 5.89 8.29 -40.82 -0.34 5.55 16 44 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 45 H 0.08 1.07 6.37 -52.49 -0.33 0.73 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -27.71 365.44 -7.77 -35.47 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -5.38 Total: 10.17 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -2.97 Total: -6.11 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.47 Total: -36.36 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.36 Total: -19.75 kcal Atomic # 14 Polarization: 16.10 SS G_CDS: -5.03 Total: 11.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -27.71 -7.77 -35.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418162392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.461 kcal (2) G-P(sol) polarization free energy of solvation -27.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds