Wall clock time and date at job start Wed Apr 1 2020 02:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47304 * 2 1 4 4 C 1.53001 * 109.47285 * 240.00290 * 2 1 3 5 5 C 1.53000 * 109.47226 * 119.99811 * 2 1 3 6 6 H 1.09001 * 109.46830 * 179.97438 * 5 2 1 7 7 N 1.46499 * 109.46824 * 60.00399 * 5 2 1 8 8 C 1.34775 * 120.00469 * 84.99924 * 7 5 2 9 9 O 1.21591 * 119.99732 * 359.97438 * 8 7 5 10 10 C 1.47639 * 120.00322 * 179.97438 * 8 7 5 11 11 C 1.40019 * 119.89638 * 179.97438 * 10 8 7 12 12 C 1.36318 * 120.10482 * 180.23846 * 11 10 8 13 13 C 1.40884 * 119.89257 * 359.51625 * 12 11 10 14 14 C 1.41105 * 120.10547 * 180.21516 * 13 12 11 15 15 H 1.08007 * 120.00152 * 204.80045 * 14 13 12 16 16 C 1.40225 * 120.00158 * 24.80074 * 14 13 12 17 17 N 1.30652 * 119.99557 * 17.73396 * 16 14 13 18 18 Si 1.86800 * 120.00613 * 197.73349 * 16 14 13 19 19 H 1.48499 * 109.47055 * 89.99717 * 18 16 14 20 20 H 1.48498 * 109.47654 * 210.00290 * 18 16 14 21 21 H 1.48504 * 109.46638 * 330.00266 * 18 16 14 22 22 C 1.40892 * 119.79584 * 0.47930 * 13 12 11 23 23 C 1.36326 * 119.88776 * 359.75467 * 22 13 12 24 24 C 1.50696 * 109.47276 * 299.99971 * 5 2 1 25 25 N 1.31691 * 126.18246 * 304.69032 * 24 5 2 26 26 C 1.34344 * 105.81920 * 179.85725 * 25 24 5 27 27 O 1.21899 * 126.57231 * 180.18522 * 26 25 24 28 28 O 1.34138 * 106.86487 * 0.40125 * 26 25 24 29 29 N 1.21337 * 109.55117 * 359.74889 * 28 26 25 30 30 H 0.97003 * 124.94221 * 180.02562 * 29 28 26 31 31 H 1.09003 * 109.46962 * 299.99887 * 1 2 3 32 32 H 1.08997 * 109.47366 * 59.99779 * 1 2 3 33 33 H 1.09000 * 109.47120 * 179.97438 * 1 2 3 34 34 H 1.08991 * 109.47534 * 180.02562 * 3 2 1 35 35 H 1.08997 * 109.47089 * 300.00390 * 3 2 1 36 36 H 1.09003 * 109.47019 * 60.00147 * 3 2 1 37 37 H 1.09000 * 109.46816 * 299.99910 * 4 2 1 38 38 H 1.08997 * 109.46975 * 59.99691 * 4 2 1 39 39 H 1.08995 * 109.46991 * 180.02562 * 4 2 1 40 40 H 0.97003 * 119.99859 * 264.99308 * 7 5 2 41 41 H 1.07994 * 119.94660 * 359.95261 * 11 10 8 42 42 H 1.07995 * 120.05246 * 179.74740 * 12 11 10 43 43 H 0.97005 * 119.99384 * 179.97438 * 17 16 14 44 44 H 1.07999 * 120.05803 * 179.73191 * 22 13 12 45 45 H 1.07997 * 119.94151 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2493 6 1 3.1300 -0.7216 1.2490 7 7 1.5517 -2.1024 1.2492 8 6 2.2285 -3.0565 0.5797 9 8 3.2441 -2.7707 -0.0246 10 6 1.7367 -4.4486 0.5802 11 6 2.4413 -5.4379 -0.1165 12 6 1.9884 -6.7236 -0.1230 13 6 0.8150 -7.0582 0.5812 14 6 0.3446 -8.3886 0.5813 15 1 -0.7025 -8.5912 0.7517 16 6 1.2367 -9.4477 0.3602 17 7 2.5221 -9.2585 0.4978 18 14 0.5873 -11.1288 -0.1312 19 1 0.5070 -11.2151 -1.6115 20 1 1.5034 -12.1813 0.3770 21 1 -0.7648 -11.3264 0.4502 22 6 0.1094 -6.0593 1.2809 23 6 0.5675 -4.7753 1.2776 24 6 1.5377 -0.0108 2.4797 25 7 1.7070 1.2636 2.7652 26 6 1.0960 1.4588 3.9456 27 8 1.0200 2.5093 4.5592 28 8 0.5898 0.2750 4.3222 29 7 0.8448 -0.5617 3.4813 30 1 0.5835 -1.4947 3.5287 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1299 1.4426 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9564 0.8900 37 1 1.6767 -1.7488 -1.2493 38 1 1.6766 -0.2073 -2.1392 39 1 3.1300 -0.7216 -1.2490 40 1 0.7413 -2.3304 1.7311 41 1 3.3424 -5.1810 -0.6534 42 1 2.5302 -7.4852 -0.6640 43 1 3.1391 -9.9913 0.3452 44 1 -0.7930 -6.3103 1.8186 45 1 0.0271 -4.0089 1.8133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001418162392.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:34 Heat of formation + Delta-G solvation = 5.312783 kcal Electronic energy + Delta-G solvation = -30506.360255 eV Core-core repulsion = 26299.222238 eV Total energy + Delta-G solvation = -4207.138016 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.87495 -41.47813 -39.49474 -39.36702 -38.40074 -36.41383 -35.69336 -35.10078 -33.35304 -31.93957 -31.32991 -29.15040 -28.22154 -28.08990 -27.19141 -25.26115 -24.06331 -23.32739 -22.61697 -21.75832 -21.11167 -20.15961 -19.66249 -19.31433 -18.77542 -17.76127 -17.33301 -17.09486 -16.94643 -16.59789 -15.89263 -15.68976 -15.47860 -15.04710 -15.02832 -14.97138 -14.54743 -14.41383 -13.99821 -13.84395 -13.62480 -13.27613 -13.19731 -13.06521 -12.87755 -12.85573 -12.75478 -12.60883 -12.47303 -12.34176 -12.23629 -11.98126 -11.75957 -11.67532 -11.34838 -11.32038 -11.11175 -10.72318 -10.39078 -10.25273 -9.51685 -9.39532 -8.77983 -6.46214 -0.30652 0.46516 0.56777 1.20606 1.38715 1.43320 1.52837 1.53899 1.67476 1.95783 2.12256 2.17323 2.78290 2.89798 3.39352 3.59025 3.74715 3.82106 4.05491 4.13569 4.33287 4.41877 4.44072 4.45637 4.49498 4.78560 4.83838 4.96623 5.01336 5.03285 5.06591 5.08771 5.12477 5.23289 5.25722 5.28787 5.31602 5.34936 5.51203 5.62302 5.66323 5.81686 5.95362 6.04929 6.24220 6.24563 6.49968 6.60680 6.68699 6.80317 6.93000 7.36481 8.16307 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.019062 B = 0.002538 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.520366 B =11031.546478 C =11849.358439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.151 4.151 4 C -0.126 4.126 5 C 0.232 3.768 6 H 0.132 0.868 7 N -0.726 5.726 8 C 0.591 3.409 9 O -0.573 6.573 10 C -0.286 4.286 11 C -0.045 4.045 12 C -0.206 4.206 13 C 0.101 3.899 14 C -0.473 4.473 15 H 0.090 0.910 16 C 0.036 3.964 17 N -0.802 5.802 18 Si 0.983 3.017 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.252 1.252 22 C -0.245 4.245 23 C -0.037 4.037 24 C 0.369 3.631 25 N -0.548 5.548 26 C 0.553 3.447 27 O -0.515 6.515 28 O -0.070 6.070 29 N -0.476 5.476 30 H 0.487 0.513 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.407 0.593 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.294 0.706 44 H 0.114 0.886 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.144 9.343 0.542 10.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 C -0.209 4.209 4 C -0.183 4.183 5 C 0.124 3.876 6 H 0.149 0.851 7 N -0.382 5.382 8 C 0.385 3.615 9 O -0.454 6.454 10 C -0.291 4.291 11 C -0.064 4.064 12 C -0.225 4.225 13 C 0.098 3.902 14 C -0.500 4.500 15 H 0.108 0.892 16 C -0.183 4.183 17 N -0.425 5.425 18 Si 0.803 3.197 19 H -0.188 1.188 20 H -0.194 1.194 21 H -0.176 1.176 22 C -0.264 4.264 23 C -0.055 4.055 24 C 0.100 3.900 25 N -0.311 5.311 26 C 0.303 3.697 27 O -0.399 6.399 28 O -0.091 6.091 29 N -0.143 5.143 30 H 0.345 0.655 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.245 0.755 41 H 0.113 0.887 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.132 0.868 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.086 10.581 0.509 11.354 hybrid contribution -0.613 -1.852 0.548 2.027 sum -4.699 8.729 1.058 9.969 Atomic orbital electron populations 1.21929 0.93067 1.02542 1.02588 1.20862 0.96944 0.96197 0.92379 1.22104 1.01482 0.93647 1.03674 1.21816 1.01147 0.99393 0.95979 1.19740 1.01225 0.80202 0.86385 0.85069 1.45598 1.30074 1.06313 1.56209 1.18063 0.82074 0.84627 0.76695 1.90715 1.26563 1.82872 1.45205 1.19028 1.02826 0.91970 1.15268 1.20546 0.97082 0.92742 0.96068 1.20941 1.01148 0.95182 1.05267 1.18141 0.91015 0.93783 0.87242 1.20158 0.96739 0.91359 1.41774 0.89220 1.26922 0.94379 1.05494 0.91521 1.69792 1.04597 1.36212 1.31941 0.85174 0.79686 0.75363 0.79487 1.18786 1.19408 1.17579 1.20943 1.04160 0.94106 1.07240 1.20702 0.93434 0.95954 0.95420 1.25379 0.84815 0.89623 0.90231 1.73357 1.31311 1.12197 1.14255 1.22063 0.79946 0.82750 0.84970 1.91143 1.64058 1.23154 1.61513 1.85262 1.68521 1.19716 1.35647 1.42598 1.49341 1.09187 1.13153 0.65530 0.93096 0.90944 0.91643 0.92514 0.91513 0.90075 0.93761 0.91686 0.92831 0.75516 0.88743 0.88306 0.89490 0.86804 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.07 71.98 0.58 -1.65 16 2 C -0.06 -1.12 0.62 -52.18 -0.03 -1.15 16 3 C -0.15 -2.76 8.08 71.98 0.58 -2.17 16 4 C -0.13 -2.81 7.00 71.98 0.50 -2.31 16 5 C 0.23 4.24 2.09 44.24 0.09 4.34 16 6 H 0.13 2.76 7.58 -2.39 -0.02 2.74 16 7 N -0.73 -13.84 4.04 -449.17 -1.81 -15.65 16 8 C 0.59 17.64 6.12 86.73 0.53 18.18 16 9 O -0.57 -20.45 13.44 -4.00 -0.05 -20.50 16 10 C -0.29 -10.22 5.89 -19.93 -0.12 -10.34 16 11 C -0.04 -1.94 9.52 22.25 0.21 -1.73 16 12 C -0.21 -9.81 8.63 22.47 0.19 -9.62 16 13 C 0.10 4.71 5.57 -21.28 -0.12 4.59 16 14 C -0.47 -22.00 9.04 23.46 0.21 -21.78 16 15 H 0.09 3.92 7.91 -2.91 -0.02 3.89 16 16 C 0.04 1.59 5.14 85.35 0.44 2.03 16 17 N -0.80 -37.76 10.96 21.87 0.24 -37.52 16 18 Si 0.98 33.45 29.60 68.60 2.03 35.48 16 19 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 20 H -0.27 -8.86 7.11 99.48 0.71 -8.15 16 21 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 22 C -0.25 -9.45 9.73 22.47 0.22 -9.23 16 23 C -0.04 -1.15 9.47 22.25 0.21 -0.94 16 24 C 0.37 6.38 5.88 138.21 0.81 7.19 16 25 N -0.55 -12.76 8.69 -431.20 -3.75 -16.51 16 26 C 0.55 14.74 9.62 130.00 1.25 15.99 16 27 O -0.51 -17.81 18.07 18.13 0.33 -17.48 16 28 O -0.07 -1.34 11.35 93.30 1.06 -0.28 16 29 N -0.48 -6.26 6.58 -53.63 -0.35 -6.61 16 30 H 0.49 2.82 7.63 -92.71 -0.71 2.11 16 31 H 0.05 0.76 7.22 -2.39 -0.02 0.74 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 0.98 7.61 -2.39 -0.02 0.96 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.67 5.32 -2.39 -0.01 1.66 16 37 H 0.04 1.17 5.77 -2.39 -0.01 1.16 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.05 1.35 7.52 -2.39 -0.02 1.34 16 40 H 0.41 5.21 5.29 -92.71 -0.49 4.72 16 41 H 0.09 4.11 7.63 -2.91 -0.02 4.09 16 42 H 0.10 5.04 6.16 -2.91 -0.02 5.02 16 43 H 0.29 12.50 8.29 -92.70 -0.77 11.73 16 44 H 0.11 3.94 8.06 -2.91 -0.02 3.92 16 45 H 0.14 2.73 6.37 -2.91 -0.02 2.72 16 Total: -1.00 -63.45 365.44 3.13 -60.32 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: -0.13 Total: 27.37 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: 5.57 Total: -8.61 kcal Atomic # 7 Polarization: -70.62 SS G_CDS: -5.67 Total: -76.30 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: 1.33 Total: -38.26 kcal Atomic # 14 Polarization: 33.45 SS G_CDS: 2.03 Total: 35.48 kcal Total: -63.45 3.13 -60.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418162392.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.629 kcal (2) G-P(sol) polarization free energy of solvation -63.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds