Wall clock time and date at job start Wed Apr 1 2020 03:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34943 * 126.03883 * 2 1 4 4 C 1.35316 * 107.74769 * 180.14776 * 3 2 1 5 5 C 1.50699 * 126.04021 * 179.87275 * 4 3 2 6 6 C 1.53002 * 109.47266 * 269.71636 * 5 4 3 7 7 H 1.08991 * 109.47479 * 305.00128 * 6 5 4 8 8 C 1.52999 * 109.47276 * 185.00142 * 6 5 4 9 9 O 1.42903 * 109.47256 * 305.00584 * 8 6 5 10 10 N 1.46497 * 109.46869 * 65.00249 * 6 5 4 11 11 S 1.65603 * 120.00045 * 214.99746 * 10 6 5 12 12 O 1.42101 * 104.27836 * 181.07111 * 11 10 6 13 13 O 1.42098 * 104.27930 * 308.93018 * 11 10 6 14 14 C 1.81397 * 104.44818 * 65.00180 * 11 10 6 15 15 C 1.53003 * 109.47076 * 180.02562 * 14 11 10 16 16 C 1.52999 * 109.46685 * 299.99708 * 15 14 11 17 17 C 1.52998 * 109.47330 * 59.99952 * 15 14 11 18 18 C 1.50704 * 109.47036 * 179.97438 * 15 14 11 19 19 H 1.07998 * 119.99799 * 0.02562 * 18 15 14 20 20 C 1.37875 * 119.99929 * 179.97438 * 18 15 14 21 21 N 1.31508 * 120.00068 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 119.99725 * 180.02562 * 20 18 15 23 23 H 1.48493 * 109.47796 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47126 * 120.00318 * 22 20 18 25 25 H 1.48503 * 109.46813 * 239.99557 * 22 20 18 26 26 C 1.39875 * 107.91949 * 359.61646 * 4 3 2 27 27 N 1.30841 * 108.19866 * 0.23831 * 26 4 3 28 28 H 1.09003 * 109.46933 * 270.25752 * 1 2 3 29 29 H 1.08996 * 109.46819 * 30.25532 * 1 2 3 30 30 H 1.09000 * 109.47012 * 150.25998 * 1 2 3 31 31 H 1.08001 * 126.12800 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.46876 * 149.72303 * 5 4 3 33 33 H 1.08992 * 109.47353 * 29.72002 * 5 4 3 34 34 H 1.08997 * 109.47286 * 185.00144 * 8 6 5 35 35 H 1.09008 * 109.47201 * 64.99925 * 8 6 5 36 36 H 0.96700 * 114.00311 * 180.02562 * 9 8 6 37 37 H 0.96999 * 120.00007 * 34.99809 * 10 6 5 38 38 H 1.09004 * 109.47057 * 300.00024 * 14 11 10 39 39 H 1.09000 * 109.47209 * 59.99724 * 14 11 10 40 40 H 1.08993 * 109.47193 * 60.00367 * 16 15 14 41 41 H 1.09004 * 109.46667 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.47597 * 299.99685 * 16 15 14 43 43 H 1.08998 * 109.46909 * 59.99623 * 17 15 14 44 44 H 1.08995 * 109.47138 * 180.02562 * 17 15 14 45 45 H 1.09006 * 109.46843 * 300.00176 * 17 15 14 46 46 H 0.97004 * 120.00186 * 180.02562 * 21 20 18 47 47 H 1.07995 * 125.90082 * 180.26038 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0072 6 6 5.1825 1.8360 -1.4511 7 1 5.3204 0.8963 -1.9858 8 6 6.4946 2.6229 -1.4564 9 8 6.3480 3.7989 -0.6578 10 7 4.1378 2.6240 -2.1097 11 16 3.8128 2.3894 -3.7165 12 8 2.7837 3.3255 -4.0062 13 8 5.0828 2.4782 -4.3476 14 6 3.1746 0.6938 -3.8063 15 6 2.8342 0.3532 -5.2586 16 6 1.7720 1.3259 -5.7749 17 6 4.0941 0.4702 -6.1187 18 6 2.3046 -1.0557 -5.3333 19 1 2.2190 -1.6487 -4.4348 20 6 1.9284 -1.5872 -6.5486 21 7 2.0312 -0.8645 -7.6425 22 14 1.2713 -3.3333 -6.6411 23 1 1.2544 -3.9287 -5.2808 24 1 -0.1081 -3.3147 -7.1909 25 1 2.1456 -4.1450 -7.5254 26 6 3.5347 -0.7322 0.0035 27 7 2.2891 -1.1328 0.0055 28 1 -0.3633 0.0046 1.0277 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.9282 2.1193 0.0004 32 1 5.5821 1.0363 0.5090 33 1 4.5443 2.4824 0.5023 34 1 6.7439 2.9068 -2.4788 35 1 7.2920 2.0027 -1.0468 36 1 7.1431 4.3477 -0.6161 37 1 3.6365 3.2831 -1.6047 38 1 3.9315 0.0007 -3.4388 39 1 2.2773 0.6103 -3.1932 40 1 2.1555 2.3448 -5.7209 41 1 1.5292 1.0831 -6.8094 42 1 0.8744 1.2426 -5.1622 43 1 4.8508 -0.2227 -5.7508 44 1 3.8515 0.2280 -7.1534 45 1 4.4776 1.4891 -6.0647 46 1 1.7662 -1.2383 -8.4975 47 1 4.4054 -1.3711 0.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434579572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:01 Heat of formation + Delta-G solvation = -46.511027 kcal Electronic energy + Delta-G solvation = -30671.957314 eV Core-core repulsion = 26598.016000 eV Total energy + Delta-G solvation = -4073.941314 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15214 -37.91779 -36.44229 -36.24874 -35.26421 -35.16430 -33.24093 -31.65084 -31.18150 -29.14460 -27.26533 -26.59186 -25.70927 -25.20932 -25.05924 -21.49496 -21.06961 -20.17739 -19.58045 -18.73462 -17.64551 -16.97325 -16.85000 -16.06384 -15.81701 -15.41197 -15.27697 -14.82948 -14.71772 -14.48662 -14.27702 -14.04158 -13.52132 -13.07656 -13.03665 -12.97376 -12.73085 -12.61201 -12.49290 -12.14992 -12.05759 -11.90008 -11.41006 -11.37773 -11.35961 -11.06947 -11.00110 -10.87379 -10.68527 -10.45371 -10.33394 -10.27217 -10.09311 -9.98390 -9.64655 -9.60980 -9.35699 -9.18573 -8.63630 -8.38955 -8.28224 -6.01860 -4.13005 0.93321 1.96061 2.58953 2.84391 3.25413 3.27439 3.34011 3.38167 4.22694 4.34669 4.42480 4.53385 4.79032 4.85465 4.85816 5.07458 5.10443 5.14072 5.23311 5.24019 5.35153 5.40313 5.41200 5.57377 5.73671 5.76389 5.81416 5.90424 6.00815 6.05159 6.36155 6.42740 6.71468 6.72789 6.80701 6.91905 7.03595 7.04652 7.26574 7.32677 7.51551 7.58205 7.70010 7.76890 7.98659 8.11688 8.35276 8.86162 9.52340 10.99540 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009948 B = 0.005079 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.956609 B = 5511.957470 C = 7193.054870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.373 5.373 3 C 0.059 3.941 4 C -0.238 4.238 5 C -0.037 4.037 6 C 0.163 3.837 7 H 0.094 0.906 8 C 0.055 3.945 9 O -0.568 6.568 10 N -1.114 6.114 11 S 2.593 3.407 12 O -0.969 6.969 13 O -0.967 6.967 14 C -0.574 4.574 15 C 0.083 3.917 16 C -0.162 4.162 17 C -0.163 4.163 18 C -0.496 4.496 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.893 3.107 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.049 3.951 27 N -0.291 5.291 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.169 0.831 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.052 0.948 36 H 0.375 0.625 37 H 0.411 0.589 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.027 0.973 41 H 0.095 0.905 42 H 0.034 0.966 43 H 0.036 0.964 44 H 0.094 0.906 45 H 0.027 0.973 46 H 0.261 0.739 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.440 5.727 17.080 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.155 5.155 3 C -0.087 4.087 4 C -0.250 4.250 5 C -0.077 4.077 6 C 0.054 3.946 7 H 0.112 0.888 8 C -0.024 4.024 9 O -0.373 6.373 10 N -0.870 5.870 11 S 2.691 3.309 12 O -0.959 6.959 13 O -0.957 6.957 14 C -0.708 4.708 15 C 0.081 3.919 16 C -0.220 4.220 17 C -0.221 4.221 18 C -0.536 4.536 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.523 5.523 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.137 4.137 27 N -0.112 5.112 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.187 0.813 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.222 0.778 37 H 0.245 0.755 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.045 0.955 41 H 0.113 0.887 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.113 0.887 45 H 0.046 0.954 46 H 0.071 0.929 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.083 4.992 16.192 17.222 hybrid contribution 0.249 -0.458 0.322 0.613 sum 3.331 4.534 16.514 17.446 Atomic orbital electron populations 1.21880 0.74319 1.05040 1.02951 1.48426 1.06620 1.03827 1.56603 1.22316 0.90973 0.93283 1.02168 1.19993 0.94405 0.93792 1.16761 1.20046 0.94077 0.98598 0.94966 1.20831 0.85902 0.92884 0.94941 0.88765 1.22847 0.96958 0.87014 0.95614 1.86438 1.41218 1.37135 1.72478 1.55718 1.48581 1.51681 1.30993 1.05590 0.74801 0.78516 0.71990 1.93538 1.59442 1.60704 1.82250 1.93525 1.41699 1.87072 1.73410 1.30460 1.10812 1.19838 1.09669 1.17913 0.93391 0.96972 0.83637 1.22260 0.98779 0.95641 1.05322 1.22264 0.96539 0.98100 1.05147 1.20970 1.42408 0.96655 0.93545 0.92374 1.24921 0.95462 0.97634 0.95699 1.69810 1.47874 1.36141 0.98481 0.86517 0.78598 0.84684 0.78109 1.19823 1.21010 1.20936 1.23785 0.95295 0.94478 1.00171 1.77390 1.01699 1.08249 1.23820 0.91011 0.89328 0.89049 0.81335 0.90208 0.89974 0.91660 0.92953 0.77846 0.75544 0.86785 0.86873 0.95459 0.88668 0.94719 0.94519 0.88715 0.95372 0.92865 0.80257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 11.47 59.85 0.69 1.63 16 2 N -0.37 -4.78 4.01 -68.16 -0.27 -5.05 16 3 C 0.06 0.68 11.32 -17.23 -0.19 0.48 16 4 C -0.24 -2.74 5.10 -105.05 -0.54 -3.27 16 5 C -0.04 -0.36 5.02 -27.88 -0.14 -0.50 16 6 C 0.16 1.89 2.46 -67.93 -0.17 1.72 16 7 H 0.09 1.10 7.15 -51.93 -0.37 0.73 16 8 C 0.06 0.58 6.88 37.16 0.26 0.84 16 9 O -0.57 -5.54 12.83 -35.23 -0.45 -6.00 16 10 N -1.11 -15.16 4.95 -4.90 -0.02 -15.19 16 11 S 2.59 48.28 4.42 -107.50 -0.47 47.80 16 12 O -0.97 -20.60 15.70 -57.54 -0.90 -21.50 16 13 O -0.97 -20.04 14.67 -57.54 -0.84 -20.88 16 14 C -0.57 -11.47 4.90 37.16 0.18 -11.29 16 15 C 0.08 2.03 0.52 -155.66 -0.08 1.95 16 16 C -0.16 -4.06 7.78 37.16 0.29 -3.77 16 17 C -0.16 -4.03 7.77 37.16 0.29 -3.74 16 18 C -0.50 -13.21 8.01 -34.44 -0.28 -13.48 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -24.35 9.35 55.43 0.52 -23.83 16 22 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.05 0.63 11.96 -17.36 -0.21 0.42 16 27 N -0.29 -4.34 12.58 30.63 0.39 -3.95 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.78 7.73 -51.93 -0.40 0.38 16 34 H 0.07 0.83 7.36 -51.93 -0.38 0.44 16 35 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 36 H 0.38 2.15 9.12 45.56 0.42 2.57 16 37 H 0.41 4.96 8.80 -34.47 -0.30 4.65 16 38 H 0.11 2.11 7.44 -51.92 -0.39 1.73 16 39 H 0.11 2.18 8.14 -51.92 -0.42 1.76 16 40 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 41 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 42 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 45 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 46 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 47 H 0.18 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -35.53 385.66 -7.66 -43.20 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.40 Total: 10.99 kcal Atomic # 6 Polarization: -27.38 SS G_CDS: 0.01 Total: -27.37 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.61 Total: -48.03 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -2.20 Total: -48.38 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 48.28 SS G_CDS: -0.47 Total: 47.80 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.53 -7.66 -43.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434579572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.314 kcal (2) G-P(sol) polarization free energy of solvation -35.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds