Wall clock time and date at job start Wed Apr 1 2020 03:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34943 * 126.03883 * 2 1 4 4 C 1.35316 * 107.74769 * 180.14776 * 3 2 1 5 5 C 1.50699 * 126.04021 * 179.87275 * 4 3 2 6 6 C 1.53002 * 109.47266 * 269.71636 * 5 4 3 7 7 H 1.08991 * 109.47479 * 305.00128 * 6 5 4 8 8 C 1.52999 * 109.47276 * 185.00142 * 6 5 4 9 9 O 1.42903 * 109.47256 * 305.00584 * 8 6 5 10 10 N 1.46497 * 109.46869 * 65.00249 * 6 5 4 11 11 S 1.65603 * 120.00045 * 214.99746 * 10 6 5 12 12 O 1.42101 * 104.27836 * 181.07111 * 11 10 6 13 13 O 1.42098 * 104.27930 * 308.93018 * 11 10 6 14 14 C 1.81397 * 104.44818 * 65.00180 * 11 10 6 15 15 C 1.53003 * 109.47076 * 180.02562 * 14 11 10 16 16 C 1.52999 * 109.46685 * 299.99708 * 15 14 11 17 17 C 1.52998 * 109.47330 * 59.99952 * 15 14 11 18 18 C 1.50704 * 109.47036 * 179.97438 * 15 14 11 19 19 H 1.07998 * 119.99799 * 0.02562 * 18 15 14 20 20 C 1.37875 * 119.99929 * 179.97438 * 18 15 14 21 21 N 1.31508 * 120.00068 * 359.97438 * 20 18 15 22 22 Si 1.86797 * 119.99725 * 180.02562 * 20 18 15 23 23 H 1.48493 * 109.47796 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47126 * 120.00318 * 22 20 18 25 25 H 1.48503 * 109.46813 * 239.99557 * 22 20 18 26 26 C 1.39875 * 107.91949 * 359.61646 * 4 3 2 27 27 N 1.30841 * 108.19866 * 0.23831 * 26 4 3 28 28 H 1.09003 * 109.46933 * 270.25752 * 1 2 3 29 29 H 1.08996 * 109.46819 * 30.25532 * 1 2 3 30 30 H 1.09000 * 109.47012 * 150.25998 * 1 2 3 31 31 H 1.08001 * 126.12800 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.46876 * 149.72303 * 5 4 3 33 33 H 1.08992 * 109.47353 * 29.72002 * 5 4 3 34 34 H 1.08997 * 109.47286 * 185.00144 * 8 6 5 35 35 H 1.09008 * 109.47201 * 64.99925 * 8 6 5 36 36 H 0.96700 * 114.00311 * 180.02562 * 9 8 6 37 37 H 0.96999 * 120.00007 * 34.99809 * 10 6 5 38 38 H 1.09004 * 109.47057 * 300.00024 * 14 11 10 39 39 H 1.09000 * 109.47209 * 59.99724 * 14 11 10 40 40 H 1.08993 * 109.47193 * 60.00367 * 16 15 14 41 41 H 1.09004 * 109.46667 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.47597 * 299.99685 * 16 15 14 43 43 H 1.08998 * 109.46909 * 59.99623 * 17 15 14 44 44 H 1.08995 * 109.47138 * 180.02562 * 17 15 14 45 45 H 1.09006 * 109.46843 * 300.00176 * 17 15 14 46 46 H 0.97004 * 120.00186 * 180.02562 * 21 20 18 47 47 H 1.07995 * 125.90082 * 180.26038 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0072 6 6 5.1825 1.8360 -1.4511 7 1 5.3204 0.8963 -1.9858 8 6 6.4946 2.6229 -1.4564 9 8 6.3480 3.7989 -0.6578 10 7 4.1378 2.6240 -2.1097 11 16 3.8128 2.3894 -3.7165 12 8 2.7837 3.3255 -4.0062 13 8 5.0828 2.4782 -4.3476 14 6 3.1746 0.6938 -3.8063 15 6 2.8342 0.3532 -5.2586 16 6 1.7720 1.3259 -5.7749 17 6 4.0941 0.4702 -6.1187 18 6 2.3046 -1.0557 -5.3333 19 1 2.2190 -1.6487 -4.4348 20 6 1.9284 -1.5872 -6.5486 21 7 2.0312 -0.8645 -7.6425 22 14 1.2713 -3.3333 -6.6411 23 1 1.2544 -3.9287 -5.2808 24 1 -0.1081 -3.3147 -7.1909 25 1 2.1456 -4.1450 -7.5254 26 6 3.5347 -0.7322 0.0035 27 7 2.2891 -1.1328 0.0055 28 1 -0.3633 0.0046 1.0277 29 1 -0.3633 0.8877 -0.5178 30 1 -0.3633 -0.8923 -0.5098 31 1 1.9282 2.1193 0.0004 32 1 5.5821 1.0363 0.5090 33 1 4.5443 2.4824 0.5023 34 1 6.7439 2.9068 -2.4788 35 1 7.2920 2.0027 -1.0468 36 1 7.1431 4.3477 -0.6161 37 1 3.6365 3.2831 -1.6047 38 1 3.9315 0.0007 -3.4388 39 1 2.2773 0.6103 -3.1932 40 1 2.1555 2.3448 -5.7209 41 1 1.5292 1.0831 -6.8094 42 1 0.8744 1.2426 -5.1622 43 1 4.8508 -0.2227 -5.7508 44 1 3.8515 0.2280 -7.1534 45 1 4.4776 1.4891 -6.0647 46 1 1.7662 -1.2383 -8.4975 47 1 4.4054 -1.3711 0.0069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434579572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:36:00 Heat of formation + Delta-G solvation = -74.438943 kcal Electronic energy + Delta-G solvation = -30673.168360 eV Core-core repulsion = 26598.016000 eV Total energy + Delta-G solvation = -4075.152359 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.03349 -38.80978 -38.14380 -37.99404 -36.85958 -36.02535 -34.11871 -33.65508 -32.14849 -30.05883 -28.34397 -28.04185 -27.71275 -27.27090 -25.87085 -22.41775 -21.96981 -21.42051 -21.00493 -20.19674 -18.90032 -18.10712 -17.82274 -17.72834 -17.07496 -16.88510 -16.61815 -16.25586 -16.08434 -15.37416 -15.15677 -15.05147 -14.93607 -14.64792 -14.44977 -14.35289 -13.84454 -13.79975 -13.71007 -13.43960 -13.22215 -13.01814 -12.95808 -12.93136 -12.80011 -12.77339 -12.54988 -12.30784 -12.21580 -12.17032 -12.11127 -11.91865 -11.59137 -11.43329 -11.29924 -10.75482 -10.68601 -10.44209 -10.29416 -10.23873 -9.15638 -8.05544 -6.23177 -0.57092 1.08025 1.38232 1.41833 1.51520 1.79180 1.94940 1.95661 2.41303 2.87381 3.16526 3.33664 3.53167 3.73820 3.93102 4.05155 4.08082 4.14213 4.24931 4.37329 4.43539 4.45450 4.53422 4.58554 4.66279 4.70629 4.75881 4.83828 4.84353 4.95388 4.98817 5.05438 5.07706 5.10628 5.28339 5.36017 5.49204 5.53366 5.62358 5.86574 5.95574 6.09883 6.23365 6.25703 6.33090 6.80841 6.86708 7.04873 7.44789 8.94477 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.009948 B = 0.005079 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.956609 B = 5511.957470 C = 7193.054870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.383 5.383 3 C 0.052 3.948 4 C -0.242 4.242 5 C -0.024 4.024 6 C 0.151 3.849 7 H 0.093 0.907 8 C 0.058 3.942 9 O -0.577 6.577 10 N -1.096 6.096 11 S 2.617 3.383 12 O -0.996 6.996 13 O -0.988 6.988 14 C -0.575 4.575 15 C 0.072 3.928 16 C -0.157 4.157 17 C -0.158 4.158 18 C -0.510 4.510 19 H 0.052 0.948 20 C 0.021 3.979 21 N -0.906 5.906 22 Si 0.949 3.051 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.280 1.280 26 C 0.040 3.960 27 N -0.338 5.338 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.194 0.806 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.393 0.607 37 H 0.422 0.578 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.040 0.960 44 H 0.070 0.930 45 H 0.034 0.966 46 H 0.262 0.738 47 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.180 6.104 19.085 20.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.165 5.165 3 C -0.094 4.094 4 C -0.254 4.254 5 C -0.064 4.064 6 C 0.044 3.956 7 H 0.111 0.889 8 C -0.022 4.022 9 O -0.384 6.384 10 N -0.856 5.856 11 S 2.713 3.287 12 O -0.986 6.986 13 O -0.977 6.977 14 C -0.707 4.707 15 C 0.070 3.930 16 C -0.215 4.215 17 C -0.216 4.216 18 C -0.549 4.549 19 H 0.071 0.929 20 C -0.178 4.178 21 N -0.545 5.545 22 Si 0.776 3.224 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.206 1.206 26 C -0.146 4.146 27 N -0.160 5.160 28 H 0.111 0.889 29 H 0.124 0.876 30 H 0.098 0.902 31 H 0.211 0.789 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.242 0.758 37 H 0.258 0.742 38 H 0.144 0.856 39 H 0.136 0.864 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.071 0.929 47 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 3.821 5.368 18.199 19.355 hybrid contribution 0.049 -0.519 -0.235 0.571 sum 3.870 4.849 17.965 19.006 Atomic orbital electron populations 1.22114 0.73103 1.05282 1.04458 1.48698 1.07556 1.03708 1.56515 1.22850 0.91143 0.94105 1.01331 1.20219 0.95108 0.93462 1.16599 1.20008 0.94006 0.98792 0.93600 1.21165 0.85816 0.92774 0.95880 0.88945 1.22742 0.96928 0.87718 0.94787 1.86387 1.42841 1.37218 1.72000 1.55264 1.49117 1.51993 1.29246 1.04626 0.73794 0.77209 0.73101 1.93492 1.60464 1.61126 1.83565 1.93498 1.42331 1.86952 1.74950 1.30357 1.11642 1.21974 1.06710 1.17887 0.92811 0.95964 0.86318 1.22181 0.99244 0.96157 1.03941 1.22181 0.96984 0.98502 1.03889 1.21204 1.42545 0.97795 0.93357 0.92935 1.25593 0.95823 1.00843 0.95557 1.69933 1.48376 1.37406 0.98786 0.85642 0.78006 0.80838 0.77957 1.19682 1.20750 1.20612 1.24229 0.95321 0.95584 0.99442 1.77321 1.02926 1.10000 1.25790 0.88927 0.87635 0.90244 0.78900 0.87895 0.89192 0.94083 0.89929 0.75754 0.74195 0.85553 0.86384 0.94949 0.90964 0.94544 0.94069 0.91072 0.94771 0.92865 0.78496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 11.47 127.77 1.47 3.09 16 2 N -0.38 -9.35 4.01 -369.56 -1.48 -10.83 16 3 C 0.05 1.09 11.32 83.54 0.95 2.04 16 4 C -0.24 -4.99 5.10 -20.14 -0.10 -5.10 16 5 C -0.02 -0.39 5.02 29.85 0.15 -0.24 16 6 C 0.15 3.08 2.46 44.99 0.11 3.19 16 7 H 0.09 1.94 7.15 -2.39 -0.02 1.93 16 8 C 0.06 1.05 6.88 71.98 0.50 1.55 16 9 O -0.58 -9.36 12.83 -148.98 -1.91 -11.27 16 10 N -1.10 -27.39 4.95 -169.40 -0.84 -28.23 16 11 S 2.62 94.41 4.42 -56.49 -0.25 94.16 16 12 O -1.00 -41.43 15.70 -127.65 -2.00 -43.43 16 13 O -0.99 -40.00 14.67 -127.65 -1.87 -41.87 16 14 C -0.57 -22.51 4.90 71.98 0.35 -22.16 16 15 C 0.07 3.54 0.52 -52.93 -0.03 3.51 16 16 C -0.16 -7.95 7.78 71.98 0.56 -7.39 16 17 C -0.16 -7.87 7.77 71.98 0.56 -7.31 16 18 C -0.51 -27.20 8.01 25.60 0.21 -27.00 16 19 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 20 C 0.02 1.14 5.15 84.66 0.44 1.58 16 21 N -0.91 -50.57 9.35 21.45 0.20 -50.37 16 22 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 C 0.04 0.95 11.96 85.24 1.02 1.97 16 27 N -0.34 -9.88 12.58 -57.02 -0.72 -10.60 16 28 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 32 H 0.10 1.22 8.14 -2.38 -0.02 1.21 16 33 H 0.09 1.35 7.73 -2.39 -0.02 1.33 16 34 H 0.04 0.96 7.36 -2.39 -0.02 0.94 16 35 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.39 3.26 9.12 -74.06 -0.68 2.59 16 37 H 0.42 9.03 8.80 -96.75 -0.85 8.18 16 38 H 0.13 4.56 7.44 -2.39 -0.02 4.54 16 39 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 40 H 0.03 1.56 5.46 -2.39 -0.01 1.54 16 41 H 0.07 3.96 6.07 -2.38 -0.01 3.95 16 42 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 45 H 0.03 1.62 5.46 -2.38 -0.01 1.61 16 46 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 47 H 0.20 3.64 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -76.19 385.66 -1.21 -77.40 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: -0.53 Total: 32.08 kcal Atomic # 6 Polarization: -58.43 SS G_CDS: 6.17 Total: -52.26 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -2.84 Total: -100.03 kcal Atomic # 8 Polarization: -90.79 SS G_CDS: -5.79 Total: -96.58 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 94.41 SS G_CDS: -0.25 Total: 94.16 kcal Total: -76.19 -1.21 -77.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434579572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.959 kcal (2) G-P(sol) polarization free energy of solvation -76.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds