Wall clock time and date at job start Wed Apr 1 2020 03:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 C 1.53002 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46877 * 180.02562 * 4 3 2 6 6 C 1.34949 * 126.03292 * 124.99906 * 5 4 3 7 7 C 1.35318 * 107.74247 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.04120 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47303 * 269.99980 * 8 7 6 10 10 S 1.65603 * 119.99899 * 164.99637 * 9 8 7 11 11 O 1.42101 * 104.27468 * 181.07552 * 10 9 8 12 12 O 1.42098 * 104.27818 * 308.93179 * 10 9 8 13 13 C 1.81397 * 104.44829 * 65.00354 * 10 9 8 14 14 C 1.52995 * 109.47104 * 179.97438 * 13 10 9 15 15 C 1.53003 * 109.47421 * 300.00181 * 14 13 10 16 16 C 1.53001 * 109.47165 * 60.00090 * 14 13 10 17 17 C 1.50696 * 109.47465 * 179.97438 * 14 13 10 18 18 H 1.08005 * 119.99696 * 359.97438 * 17 14 13 19 19 C 1.37870 * 120.00576 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99828 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 120.00556 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47155 * 89.99860 * 21 19 17 23 23 H 1.48502 * 109.47357 * 210.00050 * 21 19 17 24 24 H 1.48500 * 109.46881 * 330.00161 * 21 19 17 25 25 C 1.39875 * 107.92186 * 0.02562 * 7 6 5 26 26 N 1.30839 * 108.20184 * 359.97438 * 25 7 6 27 27 H 1.09000 * 109.47069 * 300.00287 * 1 2 3 28 28 H 1.09005 * 109.47097 * 60.00159 * 1 2 3 29 29 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47410 * 59.99905 * 3 2 1 31 31 H 1.08995 * 109.47234 * 299.99855 * 3 2 1 32 32 H 1.08998 * 109.47319 * 60.00169 * 4 3 2 33 33 H 1.09005 * 109.47113 * 299.99871 * 4 3 2 34 34 H 1.07997 * 126.13040 * 0.03555 * 6 5 4 35 35 H 1.09003 * 109.47079 * 30.00095 * 8 7 6 36 36 H 1.09002 * 109.47262 * 149.99741 * 8 7 6 37 37 H 0.97001 * 119.99766 * 345.00047 * 9 8 7 38 38 H 1.08997 * 109.47343 * 299.99888 * 13 10 9 39 39 H 1.09004 * 109.47172 * 59.99796 * 13 10 9 40 40 H 1.09003 * 109.47272 * 59.99268 * 15 14 13 41 41 H 1.08994 * 109.47450 * 180.02562 * 15 14 13 42 42 H 1.09004 * 109.46881 * 299.99916 * 15 14 13 43 43 H 1.08999 * 109.47054 * 59.99510 * 16 14 13 44 44 H 1.09001 * 109.47438 * 180.02562 * 16 14 13 45 45 H 1.09005 * 109.46932 * 299.99822 * 16 14 13 46 46 H 0.97002 * 119.99924 * 180.02562 * 20 19 17 47 47 H 1.08003 * 125.89835 * 179.73925 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0257 2.9933 0.8957 7 6 5.3263 4.2660 0.5480 8 6 6.2850 5.1790 1.2680 9 7 5.5621 5.9354 2.2934 10 16 6.3997 6.7321 3.4792 11 8 5.3894 7.3180 4.2886 12 8 7.2819 5.7500 4.0052 13 6 7.3291 8.0138 2.5938 14 6 8.1529 8.8284 3.5930 15 6 7.2171 9.4869 4.6087 16 6 9.1288 7.9037 4.3234 17 6 8.9255 9.8928 2.8574 18 1 8.8380 9.9793 1.7844 19 6 9.7440 10.7563 3.5540 20 7 9.8510 10.6507 4.8606 21 14 10.7012 12.0762 2.6423 22 1 9.8834 13.3130 2.5600 23 1 11.9631 12.3646 3.3702 24 1 11.0180 11.6002 1.2718 25 6 4.5901 4.5845 -0.5979 26 7 3.8736 3.5402 -0.9266 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8891 33 1 3.8567 0.6437 0.8909 34 1 5.4298 2.4509 1.7376 35 1 7.0680 4.5849 1.7392 36 1 6.7332 5.8706 0.5547 37 1 4.5928 5.9696 2.2778 38 1 7.9955 7.5447 1.8699 39 1 6.6339 8.6729 2.0738 40 1 6.6586 8.7167 5.1407 41 1 7.8040 10.0676 5.3203 42 1 6.5219 10.1458 4.0884 43 1 9.7954 7.4345 3.5998 44 1 9.7154 8.4840 5.0356 45 1 8.5703 7.1335 4.8555 46 1 10.4266 11.2584 5.3508 47 1 4.6070 5.5304 -1.1189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475227168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:46 Heat of formation + Delta-G solvation = -38.653350 kcal Electronic energy + Delta-G solvation = -28184.753728 eV Core-core repulsion = 24111.153148 eV Total energy + Delta-G solvation = -4073.600580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.53119 -38.48043 -36.52085 -36.24389 -35.59127 -35.21039 -33.83942 -31.64364 -30.60114 -29.58703 -26.89842 -26.58707 -25.68908 -25.25763 -25.07618 -23.79213 -21.09183 -20.55609 -19.56750 -18.70566 -17.75922 -17.20553 -16.81079 -16.48903 -15.93153 -15.83909 -15.73574 -15.29206 -14.99592 -14.72043 -14.49480 -14.39109 -13.85664 -13.72257 -13.30716 -13.02528 -12.92003 -12.64705 -12.48160 -12.40757 -12.17635 -12.03772 -11.85466 -11.67610 -11.38918 -11.07754 -11.05379 -10.90634 -10.80978 -10.66755 -10.35851 -10.26184 -10.25083 -10.08831 -9.73085 -9.62856 -9.59526 -9.19935 -8.79288 -8.62171 -8.38372 -6.01697 -4.13503 0.89864 1.57113 2.00631 2.47351 3.26875 3.28169 3.34239 3.36097 3.42027 4.12552 4.33519 4.39138 4.41213 4.55940 4.63531 4.73216 4.81580 4.83603 4.84123 4.99929 5.10941 5.14942 5.17096 5.21300 5.23794 5.50434 5.51438 5.72257 5.75405 5.94538 6.06369 6.35106 6.41464 6.48830 6.67885 6.73205 6.82436 6.93495 7.05553 7.21441 7.34323 7.39613 7.53035 7.69748 8.00540 8.11907 8.35199 8.85030 9.51824 10.99525 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.025865 B = 0.002073 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.265405 B =13506.822855 C =13987.047493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.051 3.949 4 C 0.139 3.861 5 N -0.375 5.375 6 C 0.080 3.920 7 C -0.244 4.244 8 C 0.194 3.806 9 N -1.128 6.128 10 S 2.594 3.406 11 O -0.967 6.967 12 O -0.966 6.966 13 C -0.582 4.582 14 C 0.081 3.919 15 C -0.163 4.163 16 C -0.163 4.163 17 C -0.501 4.501 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.895 3.105 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.066 3.934 26 N -0.299 5.299 27 H 0.044 0.956 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.179 0.821 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.411 0.589 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.028 0.972 41 H 0.094 0.906 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.094 0.906 45 H 0.028 0.972 46 H 0.262 0.738 47 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.801 -18.037 -10.200 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.027 4.027 4 C 0.017 3.983 5 N -0.158 5.158 6 C -0.067 4.067 7 C -0.257 4.257 8 C 0.067 3.933 9 N -0.885 5.885 10 S 2.692 3.308 11 O -0.957 6.957 12 O -0.956 6.956 13 C -0.716 4.716 14 C 0.079 3.921 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.540 4.540 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.522 5.522 21 Si 0.723 3.277 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.121 4.121 26 N -0.119 5.119 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.196 0.804 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.244 0.756 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.047 0.953 41 H 0.113 0.887 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.112 0.888 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -14.358 -19.030 -9.937 25.827 hybrid contribution 0.608 1.654 -0.595 1.860 sum -13.750 -17.376 -10.533 24.534 Atomic orbital electron populations 1.22784 0.79931 1.03113 1.00423 1.87774 1.20605 1.27002 1.95612 1.22669 0.92698 0.85279 1.02043 1.21379 0.92501 0.79123 1.05313 1.48411 1.34054 1.11797 1.21520 1.22516 0.93390 0.95537 0.95290 1.20054 1.08575 0.95640 1.01424 1.19429 0.92106 0.92516 0.89222 1.55960 1.18576 1.67107 1.46875 1.05555 0.74784 0.75938 0.74491 1.93550 1.57688 1.78999 1.65484 1.93530 1.67088 1.58354 1.76609 1.30519 1.12582 1.15268 1.13213 1.17931 0.91439 0.92634 0.90122 1.22271 0.98356 1.00749 1.00743 1.22266 1.00757 0.97722 1.01323 1.20945 1.25595 1.14028 0.93431 0.92305 1.24941 0.96523 0.97394 0.94941 1.69807 1.38610 1.37692 1.06065 0.86545 0.79424 0.81949 0.79755 1.20704 1.21177 1.19969 1.23926 0.94381 0.97911 0.95884 1.77361 1.24214 0.96714 1.13636 0.93747 0.93721 0.89162 0.92590 0.91586 0.88753 0.87593 0.80402 0.89738 0.90889 0.75608 0.86419 0.86264 0.95350 0.88716 0.94518 0.94476 0.88753 0.95296 0.92787 0.79597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.06 10.70 -35.23 -0.38 -3.43 16 3 C 0.05 0.37 6.12 37.16 0.23 0.60 16 4 C 0.14 0.96 6.88 -4.04 -0.03 0.93 16 5 N -0.37 -3.50 3.68 -61.36 -0.23 -3.73 16 6 C 0.08 0.74 11.36 -17.22 -0.20 0.54 16 7 C -0.24 -2.48 5.50 -105.05 -0.58 -3.06 16 8 C 0.19 2.13 6.61 -5.19 -0.03 2.10 16 9 N -1.13 -14.55 5.88 -11.66 -0.07 -14.62 16 10 S 2.59 46.05 4.49 -107.50 -0.48 45.57 16 11 O -0.97 -19.92 15.70 -57.54 -0.90 -20.83 16 12 O -0.97 -19.41 15.12 -57.54 -0.87 -20.28 16 13 C -0.58 -10.92 5.01 37.16 0.19 -10.74 16 14 C 0.08 1.93 0.52 -155.66 -0.08 1.85 16 15 C -0.16 -4.00 7.78 37.16 0.29 -3.71 16 16 C -0.16 -3.94 7.77 37.16 0.29 -3.65 16 17 C -0.50 -12.97 8.01 -34.44 -0.28 -13.25 16 18 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 19 C 0.06 1.68 5.15 -17.82 -0.09 1.59 16 20 N -0.88 -23.99 9.35 55.43 0.52 -23.47 16 21 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.07 0.66 11.96 -17.36 -0.21 0.45 16 26 N -0.30 -3.28 12.42 30.63 0.38 -2.90 16 27 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.11 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.18 1.22 8.06 -52.49 -0.42 0.80 16 35 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.41 4.78 8.61 -34.48 -0.30 4.48 16 38 H 0.12 1.96 8.14 -51.93 -0.42 1.53 16 39 H 0.12 2.04 8.14 -51.92 -0.42 1.61 16 40 H 0.03 0.66 5.46 -51.93 -0.28 0.37 16 41 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 42 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 45 H 0.03 0.66 5.47 -51.93 -0.28 0.38 16 46 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 47 H 0.19 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 391.05 15.07 5.89 5.89 Total: -1.00 -33.80 391.05 -7.89 -41.70 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.35 Total: 5.63 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: 0.61 Total: -25.05 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.60 Total: -44.71 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -2.15 Total: -44.54 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 46.05 SS G_CDS: -0.48 Total: 45.57 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.80 -7.89 -41.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475227168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.043 kcal (2) G-P(sol) polarization free energy of solvation -33.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds