Wall clock time and date at job start Wed Apr 1 2020 03:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00204 * 2 1 4 4 C 1.53002 * 109.47065 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46877 * 180.02562 * 4 3 2 6 6 C 1.34949 * 126.03292 * 124.99906 * 5 4 3 7 7 C 1.35318 * 107.74247 * 179.97438 * 6 5 4 8 8 C 1.50700 * 126.04120 * 180.02562 * 7 6 5 9 9 N 1.46498 * 109.47303 * 269.99980 * 8 7 6 10 10 S 1.65603 * 119.99899 * 164.99637 * 9 8 7 11 11 O 1.42101 * 104.27468 * 181.07552 * 10 9 8 12 12 O 1.42098 * 104.27818 * 308.93179 * 10 9 8 13 13 C 1.81397 * 104.44829 * 65.00354 * 10 9 8 14 14 C 1.52995 * 109.47104 * 179.97438 * 13 10 9 15 15 C 1.53003 * 109.47421 * 300.00181 * 14 13 10 16 16 C 1.53001 * 109.47165 * 60.00090 * 14 13 10 17 17 C 1.50696 * 109.47465 * 179.97438 * 14 13 10 18 18 H 1.08005 * 119.99696 * 359.97438 * 17 14 13 19 19 C 1.37870 * 120.00576 * 179.97438 * 17 14 13 20 20 N 1.31519 * 119.99828 * 0.02562 * 19 17 14 21 21 Si 1.86803 * 120.00556 * 180.02562 * 19 17 14 22 22 H 1.48500 * 109.47155 * 89.99860 * 21 19 17 23 23 H 1.48502 * 109.47357 * 210.00050 * 21 19 17 24 24 H 1.48500 * 109.46881 * 330.00161 * 21 19 17 25 25 C 1.39875 * 107.92186 * 0.02562 * 7 6 5 26 26 N 1.30839 * 108.20184 * 359.97438 * 25 7 6 27 27 H 1.09000 * 109.47069 * 300.00287 * 1 2 3 28 28 H 1.09005 * 109.47097 * 60.00159 * 1 2 3 29 29 H 1.09001 * 109.47174 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47410 * 59.99905 * 3 2 1 31 31 H 1.08995 * 109.47234 * 299.99855 * 3 2 1 32 32 H 1.08998 * 109.47319 * 60.00169 * 4 3 2 33 33 H 1.09005 * 109.47113 * 299.99871 * 4 3 2 34 34 H 1.07997 * 126.13040 * 0.03555 * 6 5 4 35 35 H 1.09003 * 109.47079 * 30.00095 * 8 7 6 36 36 H 1.09002 * 109.47262 * 149.99741 * 8 7 6 37 37 H 0.97001 * 119.99766 * 345.00047 * 9 8 7 38 38 H 1.08997 * 109.47343 * 299.99888 * 13 10 9 39 39 H 1.09004 * 109.47172 * 59.99796 * 13 10 9 40 40 H 1.09003 * 109.47272 * 59.99268 * 15 14 13 41 41 H 1.08994 * 109.47450 * 180.02562 * 15 14 13 42 42 H 1.09004 * 109.46881 * 299.99916 * 15 14 13 43 43 H 1.08999 * 109.47054 * 59.99510 * 16 14 13 44 44 H 1.09001 * 109.47438 * 180.02562 * 16 14 13 45 45 H 1.09005 * 109.46932 * 299.99822 * 16 14 13 46 46 H 0.97002 * 119.99924 * 180.02562 * 20 19 17 47 47 H 1.08003 * 125.89835 * 179.73925 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 4.1314 2.5229 0.0013 6 6 5.0257 2.9933 0.8957 7 6 5.3263 4.2660 0.5480 8 6 6.2850 5.1790 1.2680 9 7 5.5621 5.9354 2.2934 10 16 6.3997 6.7321 3.4792 11 8 5.3894 7.3180 4.2886 12 8 7.2819 5.7500 4.0052 13 6 7.3291 8.0138 2.5938 14 6 8.1529 8.8284 3.5930 15 6 7.2171 9.4869 4.6087 16 6 9.1288 7.9037 4.3234 17 6 8.9255 9.8928 2.8574 18 1 8.8380 9.9793 1.7844 19 6 9.7440 10.7563 3.5540 20 7 9.8510 10.6507 4.8606 21 14 10.7012 12.0762 2.6423 22 1 9.8834 13.3130 2.5600 23 1 11.9631 12.3646 3.3702 24 1 11.0180 11.6002 1.2718 25 6 4.5901 4.5845 -0.5979 26 7 3.8736 3.5402 -0.9266 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8463 -0.8900 32 1 3.8575 0.6435 -0.8891 33 1 3.8567 0.6437 0.8909 34 1 5.4298 2.4509 1.7376 35 1 7.0680 4.5849 1.7392 36 1 6.7332 5.8706 0.5547 37 1 4.5928 5.9696 2.2778 38 1 7.9955 7.5447 1.8699 39 1 6.6339 8.6729 2.0738 40 1 6.6586 8.7167 5.1407 41 1 7.8040 10.0676 5.3203 42 1 6.5219 10.1458 4.0884 43 1 9.7954 7.4345 3.5998 44 1 9.7154 8.4840 5.0356 45 1 8.5703 7.1335 4.8555 46 1 10.4266 11.2584 5.3508 47 1 4.6070 5.5304 -1.1189 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475227168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:45 Heat of formation + Delta-G solvation = -63.038932 kcal Electronic energy + Delta-G solvation = -28185.811166 eV Core-core repulsion = 24111.153148 eV Total energy + Delta-G solvation = -4074.658018 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.23332 -39.01842 -38.06212 -38.01568 -36.82538 -36.44333 -34.53330 -33.57877 -31.36077 -30.26677 -28.22300 -27.62736 -27.40217 -27.19641 -25.90916 -24.40804 -21.76878 -21.41236 -21.18350 -20.12522 -18.76340 -18.26700 -17.79177 -17.45121 -17.25185 -16.84309 -16.66692 -16.54930 -16.38957 -15.72433 -15.56954 -15.19163 -14.92708 -14.62419 -14.55630 -14.36301 -14.26952 -14.02951 -13.75208 -13.40225 -13.29072 -12.96747 -12.91745 -12.85506 -12.82009 -12.71567 -12.48958 -12.41895 -12.34376 -12.11632 -12.10514 -11.88171 -11.56738 -11.49883 -11.28842 -10.79665 -10.61907 -10.44102 -10.37277 -10.20169 -9.50652 -7.98775 -6.16785 -0.50657 0.86613 1.39703 1.46261 1.48452 1.56629 1.65636 2.23891 2.47469 2.76714 2.96424 3.23662 3.44149 3.56785 3.85999 3.90725 4.01440 4.09069 4.19947 4.23668 4.29038 4.40832 4.43831 4.46726 4.53445 4.63510 4.66886 4.75733 4.80833 4.84433 4.93243 4.93676 5.05435 5.09087 5.16167 5.19881 5.45830 5.57112 5.65975 5.69648 5.94596 6.03670 6.06572 6.17542 6.22944 6.39591 6.68879 6.88466 7.51265 9.00800 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.025865 B = 0.002073 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.265405 B =13506.822855 C =13987.047493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.057 3.943 4 C 0.135 3.865 5 N -0.375 5.375 6 C 0.081 3.919 7 C -0.257 4.257 8 C 0.188 3.812 9 N -1.110 6.110 10 S 2.617 3.383 11 O -0.998 6.998 12 O -0.990 6.990 13 C -0.587 4.587 14 C 0.067 3.933 15 C -0.160 4.160 16 C -0.159 4.159 17 C -0.513 4.513 18 H 0.064 0.936 19 C 0.016 3.984 20 N -0.908 5.908 21 Si 0.953 3.047 22 H -0.280 1.280 23 H -0.289 1.289 24 H -0.266 1.266 25 C 0.064 3.936 26 N -0.327 5.327 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.105 0.895 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.201 0.799 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.420 0.580 38 H 0.141 0.859 39 H 0.137 0.863 40 H 0.033 0.967 41 H 0.068 0.932 42 H 0.038 0.962 43 H 0.042 0.958 44 H 0.067 0.933 45 H 0.034 0.966 46 H 0.260 0.740 47 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.266 -18.987 -11.789 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.020 4.020 4 C 0.014 3.986 5 N -0.158 5.158 6 C -0.066 4.066 7 C -0.270 4.270 8 C 0.062 3.938 9 N -0.871 5.871 10 S 2.714 3.286 11 O -0.988 6.988 12 O -0.980 6.980 13 C -0.719 4.719 14 C 0.065 3.935 15 C -0.218 4.218 16 C -0.216 4.216 17 C -0.552 4.552 18 H 0.083 0.917 19 C -0.183 4.183 20 N -0.547 5.547 21 Si 0.779 3.221 22 H -0.206 1.206 23 H -0.215 1.215 24 H -0.191 1.191 25 C -0.123 4.123 26 N -0.148 5.148 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.123 0.877 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.116 0.884 33 H 0.146 0.854 34 H 0.218 0.782 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.255 0.745 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.053 0.947 46 H 0.069 0.931 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.836 -19.980 -11.540 27.432 hybrid contribution 0.682 1.849 -0.129 1.975 sum -14.154 -18.131 -11.669 25.792 Atomic orbital electron populations 1.22965 0.78790 1.04278 1.00858 1.87749 1.21941 1.27108 1.95657 1.22562 0.93068 0.85118 1.01300 1.21570 0.92114 0.78307 1.06602 1.48584 1.33907 1.12172 1.21117 1.22940 0.92704 0.95554 0.95426 1.20005 1.09220 0.95959 1.01800 1.19652 0.92150 0.93013 0.88977 1.55522 1.18806 1.66285 1.46472 1.04606 0.74097 0.75362 0.74556 1.93501 1.58425 1.79728 1.67172 1.93496 1.68074 1.58802 1.77601 1.30453 1.13092 1.15723 1.12636 1.17934 0.91752 0.92923 0.90908 1.22206 0.98224 1.00700 1.00648 1.22189 1.00831 0.97604 1.01017 1.21313 1.25586 1.14484 0.93853 0.91743 1.25675 0.97646 0.99416 0.95609 1.69954 1.39169 1.38358 1.07235 0.85641 0.77954 0.79576 0.78927 1.20606 1.21463 1.19059 1.24281 0.93769 0.98401 0.95849 1.77335 1.25183 0.97492 1.14773 0.93280 0.93334 0.87708 0.92919 0.92715 0.88363 0.85439 0.78235 0.89767 0.88914 0.74508 0.84123 0.84486 0.94863 0.91276 0.94273 0.93900 0.91392 0.94733 0.93071 0.77839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -5.86 10.70 -148.98 -1.59 -7.45 16 3 C 0.06 0.79 6.12 71.98 0.44 1.23 16 4 C 0.13 1.64 6.88 86.38 0.59 2.23 16 5 N -0.38 -6.32 3.68 -348.04 -1.28 -7.60 16 6 C 0.08 1.31 11.36 83.54 0.95 2.26 16 7 C -0.26 -4.59 5.50 -20.14 -0.11 -4.70 16 8 C 0.19 3.61 6.61 85.63 0.57 4.18 16 9 N -1.11 -25.96 5.88 -190.79 -1.12 -27.08 16 10 S 2.62 88.68 4.49 -56.49 -0.25 88.43 16 11 O -1.00 -40.13 15.70 -127.65 -2.00 -42.14 16 12 O -0.99 -38.42 15.12 -127.65 -1.93 -40.35 16 13 C -0.59 -20.83 5.01 71.98 0.36 -20.47 16 14 C 0.07 3.14 0.52 -52.93 -0.03 3.11 16 15 C -0.16 -7.86 7.78 71.98 0.56 -7.30 16 16 C -0.16 -7.67 7.77 71.98 0.56 -7.11 16 17 C -0.51 -26.16 8.01 25.60 0.21 -25.95 16 18 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 19 C 0.02 0.82 5.15 84.65 0.44 1.26 16 20 N -0.91 -50.02 9.35 21.45 0.20 -49.82 16 21 Si 0.95 41.80 29.54 68.60 2.03 43.82 16 22 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 C 0.06 1.14 11.96 85.24 1.02 2.16 16 26 N -0.33 -6.69 12.42 -57.02 -0.71 -7.40 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.13 0.97 8.07 -2.38 -0.02 0.95 16 34 H 0.20 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.08 1.66 7.69 -2.39 -0.02 1.64 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.42 8.76 8.61 -96.74 -0.83 7.92 16 38 H 0.14 4.28 8.14 -2.39 -0.02 4.26 16 39 H 0.14 4.34 8.14 -2.39 -0.02 4.32 16 40 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 41 H 0.07 3.73 6.07 -2.39 -0.01 3.72 16 42 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.07 3.63 6.07 -2.39 -0.01 3.62 16 45 H 0.03 1.58 5.47 -2.38 -0.01 1.57 16 46 H 0.26 13.76 8.31 -92.71 -0.77 12.99 16 47 H 0.20 2.63 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -71.77 391.05 0.28 -71.50 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.14 Total: 25.69 kcal Atomic # 6 Polarization: -54.39 SS G_CDS: 6.80 Total: -47.59 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -2.91 Total: -91.90 kcal Atomic # 8 Polarization: -84.42 SS G_CDS: -5.53 Total: -89.94 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 88.68 SS G_CDS: -0.25 Total: 88.43 kcal Total: -71.77 0.28 -71.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475227168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.457 kcal (2) G-P(sol) polarization free energy of solvation -71.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds