Wall clock time and date at job start Wed Apr 1 2020 03:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47372 * 2 1 4 4 N 1.46495 * 109.47422 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99575 * 275.30727 * 4 3 2 6 6 H 1.07993 * 120.00226 * 37.58215 * 5 4 3 7 7 C 1.38817 * 119.99908 * 217.57339 * 5 4 3 8 8 N 1.31625 * 119.99561 * 21.42948 * 7 5 4 9 9 Si 1.86800 * 120.00066 * 201.42912 * 7 5 4 10 10 H 1.48494 * 109.47376 * 90.00406 * 9 7 5 11 11 H 1.48503 * 109.46786 * 210.00334 * 9 7 5 12 12 H 1.48505 * 109.46850 * 329.99885 * 9 7 5 13 13 C 1.46494 * 120.00441 * 95.30693 * 4 3 2 14 14 C 1.53004 * 109.47302 * 270.00167 * 13 4 3 15 15 N 1.46493 * 109.47212 * 179.97438 * 14 13 4 16 16 C 1.34780 * 120.00010 * 179.97438 * 15 14 13 17 17 O 1.21553 * 119.99831 * 0.02562 * 16 15 14 18 18 C 1.47840 * 120.00261 * 180.02562 * 16 15 14 19 19 C 1.40026 * 120.55795 * 0.27168 * 18 16 15 20 20 C 1.38352 * 118.28611 * 180.26509 * 19 18 16 21 21 C 1.38348 * 119.30566 * 359.46524 * 20 19 18 22 22 N 1.31930 * 121.07977 * 0.28219 * 21 20 19 23 23 C 1.31693 * 121.88024 * 359.97438 * 22 21 20 24 24 C 1.50696 * 119.71939 * 179.97438 * 23 22 21 25 25 F 1.39893 * 109.47225 * 4.99723 * 24 23 22 26 26 F 1.39899 * 109.47236 * 125.00266 * 24 23 22 27 27 F 1.39899 * 109.46834 * 245.00099 * 24 23 22 28 28 H 1.09002 * 109.47176 * 59.99586 * 1 2 3 29 29 H 1.08994 * 109.47619 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47069 * 300.00188 * 1 2 3 31 31 H 1.09000 * 109.47165 * 239.99792 * 2 1 3 32 32 H 1.09001 * 109.47320 * 119.99645 * 2 1 3 33 33 H 1.09000 * 109.47145 * 59.99780 * 3 2 1 34 34 H 1.09007 * 109.47012 * 299.99944 * 3 2 1 35 35 H 0.97002 * 119.99325 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47418 * 150.00102 * 13 4 3 37 37 H 1.09001 * 109.46986 * 30.00101 * 13 4 3 38 38 H 1.08999 * 109.46936 * 59.99641 * 14 13 4 39 39 H 1.09001 * 109.47047 * 299.99897 * 14 13 4 40 40 H 0.96999 * 120.00578 * 0.02562 * 15 14 13 41 41 H 1.07998 * 120.85755 * 0.03338 * 19 18 16 42 42 H 1.08006 * 120.34553 * 179.73995 * 20 19 18 43 43 H 1.08001 * 119.46131 * 180.25456 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3326 1.1800 6 1 3.8185 0.6871 1.9619 7 6 5.3624 2.0510 1.3716 8 7 5.6025 3.1238 0.6478 9 14 6.5989 1.4952 2.6567 10 1 7.5686 0.5566 2.0373 11 1 7.3244 2.6766 3.1889 12 1 5.8866 0.8109 3.7656 13 6 4.2370 1.5600 -1.2641 14 6 4.4918 0.1647 -1.8377 15 7 5.2233 0.2822 -3.1014 16 6 5.5604 -0.8259 -3.7906 17 8 5.2570 -1.9228 -3.3637 18 6 6.2991 -0.7073 -5.0657 19 6 6.6594 0.5501 -5.5654 20 6 7.3451 0.6067 -6.7657 21 6 7.6597 -0.5699 -7.4220 22 7 7.3117 -1.7412 -6.9246 23 6 6.6541 -1.8468 -5.7885 24 6 6.2805 -3.2098 -5.2653 25 9 6.8340 -4.1940 -6.0911 26 9 6.7730 -3.3611 -3.9647 27 9 4.8876 -3.3394 -5.2546 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 6.4215 3.6260 0.7820 36 1 5.1895 2.0596 -1.0871 37 1 3.6477 2.1421 -1.9726 38 1 3.5393 -0.3349 -2.0147 39 1 5.0812 -0.4174 -1.1291 40 1 5.4658 1.1575 -3.4419 41 1 6.4054 1.4527 -5.0296 42 1 7.6357 1.5592 -7.1838 43 1 8.1985 -0.5289 -8.3571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481146979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:22 Heat of formation + Delta-G solvation = -126.732661 kcal Electronic energy + Delta-G solvation = -31001.544663 eV Core-core repulsion = 26246.823986 eV Total energy + Delta-G solvation = -4754.720677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.87908 -47.42517 -47.29693 -41.00014 -39.03943 -36.56713 -34.60979 -33.29434 -32.86662 -32.48520 -30.83401 -28.43781 -26.66610 -25.61358 -25.03476 -23.53620 -22.66808 -21.15120 -20.78008 -20.14634 -18.88932 -18.35626 -18.24600 -17.72816 -16.86867 -16.57229 -15.74879 -15.50212 -15.32646 -14.98146 -14.60833 -14.43517 -14.20435 -14.14297 -14.03590 -13.89622 -13.67322 -13.56268 -13.46581 -13.42317 -13.17258 -12.95847 -12.82733 -12.65189 -12.10128 -11.62248 -11.57130 -11.24200 -10.98176 -10.79628 -10.51200 -10.49057 -10.43507 -10.37044 -10.14113 -9.96620 -9.86851 -9.80695 -9.64065 -8.71433 -8.53847 -6.69450 -5.90605 -3.49248 0.04746 0.52536 2.48508 2.66006 3.13059 3.32501 3.37025 3.39477 3.42253 3.55818 3.87022 4.21361 4.28549 4.40220 4.50222 4.54941 4.68053 4.72613 4.96435 5.20464 5.33540 5.41129 5.48414 5.64004 5.72650 5.87419 5.96309 6.03908 6.12450 6.24166 6.36278 6.47748 6.57867 6.60981 6.66960 6.90862 6.94353 7.13976 7.15405 7.41990 7.63883 7.75030 8.25350 8.41490 9.07757 9.69402 10.26913 11.09597 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.003262 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.802465 B = 8581.374555 C = 9336.132052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.261 4.261 6 H 0.063 0.937 7 C 0.015 3.985 8 N -0.888 5.888 9 Si 0.896 3.104 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.137 3.863 14 C 0.096 3.904 15 N -0.705 5.705 16 C 0.542 3.458 17 O -0.516 6.516 18 C -0.129 4.129 19 C -0.045 4.045 20 C -0.146 4.146 21 C 0.118 3.882 22 N -0.448 5.448 23 C 0.087 3.913 24 C 0.530 3.470 25 F -0.173 7.173 26 F -0.153 7.153 27 F -0.162 7.162 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.034 0.966 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.029 0.971 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.396 0.604 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -2.852 -16.820 17.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.298 5.298 5 C -0.391 4.391 6 H 0.081 0.919 7 C -0.185 4.185 8 N -0.530 5.530 9 Si 0.726 3.274 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.009 3.991 14 C -0.029 4.029 15 N -0.355 5.355 16 C 0.325 3.675 17 O -0.394 6.394 18 C -0.135 4.135 19 C -0.071 4.071 20 C -0.166 4.166 21 C -0.040 4.040 22 N -0.156 5.156 23 C -0.054 4.054 24 C 0.475 3.525 25 F -0.154 7.154 26 F -0.134 7.134 27 F -0.143 7.143 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.230 0.770 41 H 0.172 0.828 42 H 0.172 0.828 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.124 -4.273 -16.859 17.522 hybrid contribution 0.652 0.759 0.899 1.345 sum 2.776 -3.515 -15.961 16.577 Atomic orbital electron populations 1.21720 0.97302 1.00460 1.00983 1.22186 0.93859 1.00855 1.01631 1.20948 0.84920 0.93029 0.98959 1.43595 0.99490 1.84747 1.01997 1.19055 1.05624 1.20432 0.93958 0.91949 1.25172 1.00776 0.94476 0.98122 1.69996 1.25654 1.14756 1.42622 0.86392 0.81625 0.77899 0.81518 1.21183 1.21685 1.20078 1.21064 1.00418 0.91000 0.86570 1.22623 0.95004 1.03211 0.82033 1.45998 1.57179 1.07790 1.24567 1.17948 0.80434 0.85627 0.83489 1.90893 1.53888 1.25584 1.68990 1.20959 1.00964 0.94143 0.97414 1.21927 0.93310 0.96901 0.94953 1.22373 0.97939 1.00968 0.95316 1.23051 0.95125 0.86524 0.99283 1.67327 1.09141 1.29259 1.09838 1.21216 0.98082 0.92995 0.93105 1.17478 0.75551 0.83492 0.76029 1.93196 1.85423 1.64516 1.72293 1.93288 1.87342 1.95814 1.36998 1.93236 1.28718 1.96093 1.96248 0.93478 0.93762 0.93204 0.92911 0.92310 0.93512 0.94747 0.93517 0.88350 0.95245 0.92449 0.91215 0.76957 0.82799 0.82825 0.80923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.15 -2.60 6.23 -26.73 -0.17 -2.77 16 3 C 0.15 2.96 5.72 -4.04 -0.02 2.94 16 4 N -0.58 -13.46 2.43 -173.24 -0.42 -13.88 16 5 C -0.26 -6.79 9.45 -15.06 -0.14 -6.93 16 6 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 7 C 0.01 0.39 4.95 -17.43 -0.09 0.30 16 8 N -0.89 -23.88 11.47 55.49 0.64 -23.25 16 9 Si 0.90 20.98 29.60 -169.99 -5.03 15.94 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.14 2.87 5.45 -4.04 -0.02 2.85 16 14 C 0.10 1.84 6.00 -4.04 -0.02 1.82 16 15 N -0.70 -10.95 5.51 -61.25 -0.34 -11.29 16 16 C 0.54 8.86 7.59 -12.33 -0.09 8.77 16 17 O -0.52 -10.24 11.34 5.32 0.06 -10.18 16 18 C -0.13 -1.70 5.86 -104.82 -0.61 -2.31 16 19 C -0.04 -0.40 9.65 -38.87 -0.37 -0.77 16 20 C -0.15 -0.96 10.10 -39.50 -0.40 -1.36 16 21 C 0.12 0.93 11.17 -17.47 -0.20 0.73 16 22 N -0.45 -5.40 9.73 -9.14 -0.09 -5.49 16 23 C 0.09 1.22 6.30 -82.17 -0.52 0.70 16 24 C 0.53 8.44 2.78 36.00 0.10 8.54 16 25 F -0.17 -2.61 16.86 2.25 0.04 -2.57 16 26 F -0.15 -2.73 14.48 2.25 0.03 -2.69 16 27 F -0.16 -2.74 15.53 2.25 0.03 -2.71 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.05 0.97 6.64 -51.93 -0.34 0.62 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.03 0.64 7.83 -51.93 -0.41 0.24 16 35 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 36 H 0.10 2.31 5.52 -51.93 -0.29 2.03 16 37 H 0.03 0.57 7.86 -51.93 -0.41 0.16 16 38 H 0.06 1.13 6.64 -51.93 -0.34 0.78 16 39 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.40 4.90 6.58 -40.82 -0.27 4.63 16 41 H 0.15 1.00 6.52 -52.49 -0.34 0.66 16 42 H 0.15 0.45 8.06 -52.48 -0.42 0.02 16 43 H 0.17 0.71 8.06 -52.49 -0.42 0.29 16 LS Contribution 368.15 15.07 5.55 5.55 Total: -1.00 -31.56 368.15 -7.05 -38.61 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.33 Total: 1.22 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -2.19 Total: 10.74 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.21 Total: -53.91 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.06 Total: -10.18 kcal Atomic # 9 Polarization: -8.07 SS G_CDS: 0.11 Total: -7.97 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.56 -7.05 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481146979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.122 kcal (2) G-P(sol) polarization free energy of solvation -31.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds