Wall clock time and date at job start Wed Apr 1 2020 03:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47372 * 2 1 4 4 N 1.46495 * 109.47422 * 180.02562 * 3 2 1 5 5 C 1.36940 * 119.99575 * 275.30727 * 4 3 2 6 6 H 1.07993 * 120.00226 * 37.58215 * 5 4 3 7 7 C 1.38817 * 119.99908 * 217.57339 * 5 4 3 8 8 N 1.31625 * 119.99561 * 21.42948 * 7 5 4 9 9 Si 1.86800 * 120.00066 * 201.42912 * 7 5 4 10 10 H 1.48494 * 109.47376 * 90.00406 * 9 7 5 11 11 H 1.48503 * 109.46786 * 210.00334 * 9 7 5 12 12 H 1.48505 * 109.46850 * 329.99885 * 9 7 5 13 13 C 1.46494 * 120.00441 * 95.30693 * 4 3 2 14 14 C 1.53004 * 109.47302 * 270.00167 * 13 4 3 15 15 N 1.46493 * 109.47212 * 179.97438 * 14 13 4 16 16 C 1.34780 * 120.00010 * 179.97438 * 15 14 13 17 17 O 1.21553 * 119.99831 * 0.02562 * 16 15 14 18 18 C 1.47840 * 120.00261 * 180.02562 * 16 15 14 19 19 C 1.40026 * 120.55795 * 0.27168 * 18 16 15 20 20 C 1.38352 * 118.28611 * 180.26509 * 19 18 16 21 21 C 1.38348 * 119.30566 * 359.46524 * 20 19 18 22 22 N 1.31930 * 121.07977 * 0.28219 * 21 20 19 23 23 C 1.31693 * 121.88024 * 359.97438 * 22 21 20 24 24 C 1.50696 * 119.71939 * 179.97438 * 23 22 21 25 25 F 1.39893 * 109.47225 * 4.99723 * 24 23 22 26 26 F 1.39899 * 109.47236 * 125.00266 * 24 23 22 27 27 F 1.39899 * 109.46834 * 245.00099 * 24 23 22 28 28 H 1.09002 * 109.47176 * 59.99586 * 1 2 3 29 29 H 1.08994 * 109.47619 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47069 * 300.00188 * 1 2 3 31 31 H 1.09000 * 109.47165 * 239.99792 * 2 1 3 32 32 H 1.09001 * 109.47320 * 119.99645 * 2 1 3 33 33 H 1.09000 * 109.47145 * 59.99780 * 3 2 1 34 34 H 1.09007 * 109.47012 * 299.99944 * 3 2 1 35 35 H 0.97002 * 119.99325 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.47418 * 150.00102 * 13 4 3 37 37 H 1.09001 * 109.46986 * 30.00101 * 13 4 3 38 38 H 1.08999 * 109.46936 * 59.99641 * 14 13 4 39 39 H 1.09001 * 109.47047 * 299.99897 * 14 13 4 40 40 H 0.96999 * 120.00578 * 0.02562 * 15 14 13 41 41 H 1.07998 * 120.85755 * 0.03338 * 19 18 16 42 42 H 1.08006 * 120.34553 * 179.73995 * 20 19 18 43 43 H 1.08001 * 119.46131 * 180.25456 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1901 1.3326 1.1800 6 1 3.8185 0.6871 1.9619 7 6 5.3624 2.0510 1.3716 8 7 5.6025 3.1238 0.6478 9 14 6.5989 1.4952 2.6567 10 1 7.5686 0.5566 2.0373 11 1 7.3244 2.6766 3.1889 12 1 5.8866 0.8109 3.7656 13 6 4.2370 1.5600 -1.2641 14 6 4.4918 0.1647 -1.8377 15 7 5.2233 0.2822 -3.1014 16 6 5.5604 -0.8259 -3.7906 17 8 5.2570 -1.9228 -3.3637 18 6 6.2991 -0.7073 -5.0657 19 6 6.6594 0.5501 -5.5654 20 6 7.3451 0.6067 -6.7657 21 6 7.6597 -0.5699 -7.4220 22 7 7.3117 -1.7412 -6.9246 23 6 6.6541 -1.8468 -5.7885 24 6 6.2805 -3.2098 -5.2653 25 9 6.8340 -4.1940 -6.0911 26 9 6.7730 -3.3611 -3.9647 27 9 4.8876 -3.3394 -5.2546 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 6.4215 3.6260 0.7820 36 1 5.1895 2.0596 -1.0871 37 1 3.6477 2.1421 -1.9726 38 1 3.5393 -0.3349 -2.0147 39 1 5.0812 -0.4174 -1.1291 40 1 5.4658 1.1575 -3.4419 41 1 6.4054 1.4527 -5.0296 42 1 7.6357 1.5592 -7.1838 43 1 8.1985 -0.5289 -8.3571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481146979.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:21 Heat of formation + Delta-G solvation = -146.570924 kcal Electronic energy + Delta-G solvation = -31002.404915 eV Core-core repulsion = 26246.823986 eV Total energy + Delta-G solvation = -4755.580929 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.11530 -48.64798 -48.58444 -41.90890 -40.23517 -38.25581 -36.00031 -34.63745 -34.08519 -33.36330 -32.54031 -29.94268 -27.74533 -27.34155 -26.02155 -24.96158 -23.69596 -22.64571 -22.13817 -21.71223 -19.93833 -19.50731 -19.47274 -19.01364 -18.36210 -17.76685 -17.05551 -16.67088 -16.55640 -16.41164 -15.97725 -15.84668 -15.53852 -15.41967 -15.33424 -15.03695 -14.98729 -14.78636 -14.75490 -14.70960 -14.43140 -14.21020 -14.14905 -14.00569 -13.34333 -13.11320 -13.08918 -12.93216 -12.63896 -12.53150 -12.22706 -12.03874 -11.87677 -11.68615 -11.44527 -11.28004 -11.26173 -10.84677 -10.62133 -10.53988 -10.10417 -8.59695 -7.87072 -5.49325 -0.80465 -0.18855 1.42739 1.43613 1.47764 1.53688 1.64609 1.90804 2.43066 2.47950 2.48891 2.87876 3.19864 3.34813 3.36697 3.49838 3.71113 3.72639 3.80580 4.07565 4.21293 4.26271 4.33936 4.38065 4.52745 4.67220 4.70061 4.72800 4.85197 4.86599 4.99626 5.14009 5.22110 5.25489 5.28710 5.33129 5.43709 5.62346 5.65317 5.73076 6.34974 6.43020 6.46829 7.02439 7.15459 7.81953 8.33647 9.08724 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011203 B = 0.003262 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.802465 B = 8581.374555 C = 9336.132052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 C 0.146 3.854 4 N -0.596 5.596 5 C -0.271 4.271 6 H 0.049 0.951 7 C -0.022 4.022 8 N -0.907 5.907 9 Si 0.946 3.054 10 H -0.291 1.291 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.145 3.855 14 C 0.119 3.881 15 N -0.695 5.695 16 C 0.539 3.461 17 O -0.560 6.560 18 C -0.149 4.149 19 C -0.041 4.041 20 C -0.118 4.118 21 C 0.123 3.877 22 N -0.471 5.471 23 C 0.067 3.933 24 C 0.520 3.480 25 F -0.173 7.173 26 F -0.172 7.172 27 F -0.175 7.175 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.052 0.948 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.031 0.969 40 H 0.413 0.587 41 H 0.180 0.820 42 H 0.206 0.794 43 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -0.934 -19.244 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.021 3.979 4 N -0.317 5.317 5 C -0.401 4.401 6 H 0.067 0.933 7 C -0.220 4.220 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.218 1.218 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.018 3.982 14 C -0.007 4.007 15 N -0.347 5.347 16 C 0.325 3.675 17 O -0.440 6.440 18 C -0.155 4.155 19 C -0.067 4.067 20 C -0.137 4.137 21 C -0.034 4.034 22 N -0.180 5.180 23 C -0.073 4.073 24 C 0.465 3.535 25 F -0.154 7.154 26 F -0.153 7.153 27 F -0.156 7.156 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.095 0.905 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.251 0.749 41 H 0.197 0.803 42 H 0.223 0.777 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.647 -2.337 -19.304 19.625 hybrid contribution 0.516 0.188 1.522 1.618 sum 3.164 -2.149 -17.782 18.189 Atomic orbital electron populations 1.21654 0.94304 1.01701 1.02041 1.22024 0.96405 0.98931 1.00184 1.21045 0.83295 0.94363 0.99195 1.43824 1.00867 1.84994 1.01970 1.19143 1.06274 1.19949 0.94772 0.93316 1.25657 1.01864 0.94688 0.99834 1.70064 1.25921 1.15330 1.43713 0.85616 0.79756 0.77316 0.79852 1.21793 1.21333 1.19915 1.20945 0.99439 0.91585 0.86227 1.22045 0.94359 1.01434 0.82828 1.45724 1.56886 1.08831 1.23303 1.18487 0.79821 0.84806 0.84422 1.90866 1.55556 1.27185 1.70349 1.20676 1.02651 0.95928 0.96208 1.22317 0.92726 0.95744 0.95924 1.22935 0.94808 1.02615 0.93323 1.23930 0.93603 0.85634 1.00207 1.67330 1.09718 1.31735 1.09230 1.20853 1.00252 0.91570 0.94577 1.17891 0.74979 0.85120 0.75493 1.93178 1.85318 1.64856 1.72062 1.93235 1.87490 1.96062 1.38516 1.93192 1.29823 1.96306 1.96273 0.91982 0.92468 0.92570 0.93662 0.94467 0.94621 0.92977 0.93582 0.90541 0.93217 0.93071 0.95001 0.74891 0.80290 0.77709 0.76665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.91 71.98 0.71 -3.12 16 2 C -0.14 -4.85 6.23 30.59 0.19 -4.66 16 3 C 0.15 5.85 5.72 86.38 0.49 6.35 16 4 N -0.60 -28.08 2.43 -702.01 -1.71 -29.78 16 5 C -0.27 -14.41 9.45 84.03 0.79 -13.61 16 6 H 0.05 2.67 7.92 -2.91 -0.02 2.65 16 7 C -0.02 -1.16 4.95 84.86 0.42 -0.74 16 8 N -0.91 -48.96 11.47 21.65 0.25 -48.71 16 9 Si 0.95 43.68 29.60 68.60 2.03 45.71 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 11 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.15 6.09 5.45 86.38 0.47 6.56 16 14 C 0.12 4.70 6.00 86.38 0.52 5.22 16 15 N -0.70 -21.55 5.51 -465.98 -2.57 -24.12 16 16 C 0.54 17.95 7.59 86.78 0.66 18.61 16 17 O -0.56 -23.36 11.34 -3.88 -0.04 -23.41 16 18 C -0.15 -3.77 5.86 -19.99 -0.12 -3.89 16 19 C -0.04 -0.59 9.65 22.73 0.22 -0.37 16 20 C -0.12 -0.91 10.10 22.32 0.23 -0.68 16 21 C 0.12 1.40 11.17 84.70 0.95 2.34 16 22 N -0.47 -10.49 9.73 -182.85 -1.78 -12.27 16 23 C 0.07 1.87 6.30 42.89 0.27 2.14 16 24 C 0.52 17.35 2.78 71.23 0.20 17.55 16 25 F -0.17 -5.41 16.86 44.97 0.76 -4.65 16 26 F -0.17 -6.52 14.48 44.97 0.65 -5.86 16 27 F -0.17 -6.27 15.53 44.97 0.70 -5.57 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 31 H 0.04 1.67 6.64 -2.39 -0.02 1.66 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.48 8.08 -2.39 -0.02 1.47 16 34 H 0.05 1.88 7.83 -2.38 -0.02 1.86 16 35 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 36 H 0.08 3.62 5.52 -2.39 -0.01 3.60 16 37 H 0.05 1.86 7.86 -2.39 -0.02 1.84 16 38 H 0.05 2.07 6.64 -2.39 -0.02 2.05 16 39 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.41 9.62 6.58 -92.71 -0.61 9.01 16 41 H 0.18 1.56 6.52 -2.91 -0.02 1.54 16 42 H 0.21 -0.43 8.06 -2.91 -0.02 -0.45 16 43 H 0.22 0.49 8.06 -2.91 -0.02 0.46 16 Total: -1.00 -73.24 368.15 4.74 -68.50 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.45 Total: 8.48 kcal Atomic # 6 Polarization: 25.68 SS G_CDS: 6.00 Total: 31.68 kcal Atomic # 7 Polarization: -109.08 SS G_CDS: -5.81 Total: -114.89 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.04 Total: -23.41 kcal Atomic # 9 Polarization: -18.19 SS G_CDS: 2.11 Total: -16.09 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -73.24 4.74 -68.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481146979.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.068 kcal (2) G-P(sol) polarization free energy of solvation -73.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds