Wall clock time and date at job start Wed Apr 1 2020 03:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46712 * 2 1 4 4 N 1.46507 * 109.46956 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99538 * 264.11493 * 4 3 2 6 6 H 1.07997 * 119.99819 * 188.01572 * 5 4 3 7 7 C 1.38813 * 120.00285 * 8.01636 * 5 4 3 8 8 N 1.31616 * 119.99862 * 25.64645 * 7 5 4 9 9 Si 1.86797 * 119.99878 * 205.64845 * 7 5 4 10 10 H 1.48502 * 109.47387 * 84.98536 * 9 7 5 11 11 H 1.48503 * 109.47042 * 204.98712 * 9 7 5 12 12 H 1.48498 * 109.47320 * 324.98105 * 9 7 5 13 13 C 1.46490 * 120.00178 * 84.11461 * 4 3 2 14 14 C 1.53003 * 109.47283 * 270.00178 * 13 4 3 15 15 N 1.46504 * 109.47204 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99755 * 179.97438 * 15 14 13 17 17 O 1.21559 * 120.00095 * 0.02562 * 16 15 14 18 18 C 1.47843 * 119.99906 * 180.02562 * 16 15 14 19 19 C 1.39560 * 120.55839 * 359.97438 * 18 16 15 20 20 N 1.31666 * 120.56543 * 180.02562 * 19 18 16 21 21 C 1.31951 * 121.87825 * 0.02562 * 20 19 18 22 22 C 1.38314 * 121.08589 * 359.97438 * 21 20 19 23 23 C 1.50696 * 120.35215 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.47094 * 0.02562 * 23 22 21 25 25 F 1.39893 * 109.46960 * 120.00464 * 23 22 21 26 26 F 1.39904 * 109.47155 * 240.00442 * 23 22 21 27 27 C 1.38405 * 119.29813 * 0.02562 * 22 21 20 28 28 H 1.09003 * 109.47191 * 60.00443 * 1 2 3 29 29 H 1.09007 * 109.47139 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47349 * 299.99967 * 1 2 3 31 31 H 1.09002 * 109.47055 * 240.00732 * 2 1 3 32 32 H 1.08994 * 109.47085 * 120.00167 * 2 1 3 33 33 H 1.08999 * 109.47187 * 59.99933 * 3 2 1 34 34 H 1.09003 * 109.46931 * 299.99716 * 3 2 1 35 35 H 0.97007 * 120.00243 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47208 * 150.00304 * 13 4 3 37 37 H 1.09000 * 109.47588 * 29.99973 * 13 4 3 38 38 H 1.08994 * 109.47100 * 59.99617 * 14 13 4 39 39 H 1.09000 * 109.47107 * 300.00119 * 14 13 4 40 40 H 0.96993 * 119.99584 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.71938 * 0.05333 * 19 18 16 42 42 H 1.07999 * 119.46130 * 180.02562 * 21 20 19 43 43 H 1.08001 * 120.85139 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1900 1.5641 1.1788 6 1 5.2621 1.6943 1.1696 7 6 3.5066 1.5198 2.3863 8 7 2.3565 0.8851 2.4685 9 14 4.2192 2.3609 3.8942 10 1 3.8323 3.7947 3.8906 11 1 3.6922 1.7091 5.1201 12 1 5.6997 2.2477 3.8710 13 6 4.2369 1.3128 -1.2629 14 6 4.4919 -0.1674 -1.5547 15 7 5.2244 -0.2972 -2.8168 16 6 5.5617 -1.5180 -3.2776 17 8 5.2577 -2.5113 -2.6463 18 6 6.3015 -1.6490 -4.5509 19 6 6.6559 -0.5165 -5.2854 20 7 7.3143 -0.6330 -6.4196 21 6 7.6627 -1.8093 -6.9054 22 6 7.3488 -2.9792 -6.2377 23 6 7.7544 -4.3138 -6.8079 24 9 8.4352 -4.1181 -8.0143 25 9 8.5920 -4.9729 -5.9018 26 9 6.6128 -5.0895 -7.0367 27 6 6.6573 -2.9111 -5.0407 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6765 1.9564 0.8900 34 1 1.6765 1.9563 -0.8900 35 1 1.8787 0.8544 3.3122 36 1 5.1894 1.8372 -1.1862 37 1 3.6476 1.7461 -2.0710 38 1 3.5395 -0.6919 -1.6313 39 1 5.0812 -0.6008 -0.7467 40 1 5.4673 0.4954 -3.3202 41 1 6.3883 0.4640 -4.9200 42 1 8.2026 -1.8595 -7.8394 43 1 6.3988 -3.8087 -4.4986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481150266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:26 Heat of formation + Delta-G solvation = -123.867768 kcal Electronic energy + Delta-G solvation = -29659.084458 eV Core-core repulsion = 24904.488012 eV Total energy + Delta-G solvation = -4754.596446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -50.59554 -48.12756 -48.03061 -41.10527 -39.16765 -36.66334 -34.72359 -33.61214 -32.70535 -31.97288 -31.30903 -28.13658 -26.88995 -25.55971 -25.07684 -23.50477 -23.18470 -20.95518 -20.92285 -19.97229 -19.03568 -18.91321 -18.91086 -17.53672 -17.25850 -16.84828 -16.69857 -15.49881 -15.42699 -14.95404 -14.91928 -14.77147 -14.48666 -14.40890 -14.26840 -14.19149 -14.05507 -13.84352 -13.73655 -13.61317 -13.41793 -12.98844 -12.75958 -12.64536 -12.44175 -11.65383 -11.39334 -11.12783 -10.91791 -10.69380 -10.66404 -10.58366 -10.43847 -10.02859 -9.98073 -9.94589 -9.93400 -9.73746 -9.29107 -8.80978 -8.39933 -7.00245 -5.83753 -3.15751 -0.04140 0.37256 2.11648 2.50821 3.00269 3.19091 3.29806 3.36466 3.44420 3.44956 3.55161 3.72148 3.95039 4.10626 4.20692 4.39271 4.48875 4.58502 4.81041 5.24182 5.26049 5.36870 5.45665 5.70647 5.74344 5.81802 6.11891 6.17033 6.23385 6.44135 6.52293 6.57658 6.63434 6.75631 6.93895 7.11139 7.14223 7.22509 7.49858 7.61839 7.74015 8.05804 8.15186 8.28439 9.16016 9.77536 10.21340 11.19488 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002095 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.314558 B =13364.459503 C =13688.273723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 C 0.170 3.830 4 N -0.590 5.590 5 C -0.259 4.259 6 H 0.075 0.925 7 C 0.002 3.998 8 N -0.889 5.889 9 Si 0.898 3.102 10 H -0.288 1.288 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.087 3.913 15 N -0.713 5.713 16 C 0.554 3.446 17 O -0.528 6.528 18 C -0.178 4.178 19 C 0.164 3.836 20 N -0.479 5.479 21 C 0.169 3.831 22 C -0.248 4.248 23 C 0.519 3.481 24 F -0.174 7.174 25 F -0.172 7.172 26 F -0.172 7.172 27 C 0.032 3.968 28 H 0.030 0.970 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.004 0.996 35 H 0.253 0.747 36 H 0.051 0.949 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.395 0.605 41 H 0.173 0.827 42 H 0.176 0.824 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.388 -5.038 -19.986 22.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.170 4.170 3 C 0.045 3.955 4 N -0.310 5.310 5 C -0.388 4.388 6 H 0.093 0.907 7 C -0.196 4.196 8 N -0.534 5.534 9 Si 0.728 3.272 10 H -0.215 1.215 11 H -0.219 1.219 12 H -0.207 1.207 13 C 0.014 3.986 14 C -0.038 4.038 15 N -0.364 5.364 16 C 0.338 3.662 17 O -0.406 6.406 18 C -0.183 4.183 19 C 0.006 3.994 20 N -0.187 5.187 21 C 0.012 3.988 22 C -0.252 4.252 23 C 0.464 3.536 24 F -0.155 7.155 25 F -0.153 7.153 26 F -0.153 7.153 27 C 0.006 3.994 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.117 0.883 33 H 0.108 0.892 34 H 0.022 0.978 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.229 0.771 41 H 0.190 0.810 42 H 0.193 0.807 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.261 -4.992 -19.780 22.010 hybrid contribution 0.282 -0.449 0.952 1.090 sum 8.543 -5.441 -18.828 21.380 Atomic orbital electron populations 1.21629 0.98529 0.99358 1.00033 1.22225 0.92968 1.00450 1.01352 1.20948 0.81464 0.94547 0.98496 1.44248 1.01935 1.83469 1.01356 1.19259 0.92263 1.43786 0.83447 0.90721 1.24733 0.97557 0.99955 0.97341 1.70159 1.17177 1.40991 1.25068 0.86371 0.78431 0.79885 0.82549 1.21546 1.21946 1.20749 1.20967 0.96532 0.91462 0.89666 1.22910 0.95985 1.02165 0.82691 1.46146 1.57584 1.06952 1.25758 1.17875 0.79762 0.84416 0.84121 1.90832 1.54410 1.36989 1.58324 1.21196 1.04050 0.94464 0.98628 1.23387 0.88727 0.98693 0.88556 1.67944 1.11946 1.25993 1.12777 1.22950 0.91775 0.86030 0.98079 1.21029 1.09391 0.94347 1.00434 1.17942 0.75058 0.84825 0.75783 1.93181 1.80555 1.95076 1.46705 1.93254 1.72201 1.82731 1.67096 1.93255 1.50366 1.77104 1.94567 1.21508 0.87647 0.99136 0.91120 0.95072 0.94790 0.92959 0.96076 0.88336 0.89156 0.97796 0.93646 0.93066 0.93764 0.91158 0.91065 0.77108 0.81031 0.80749 0.82229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.91 37.16 0.37 -2.22 16 2 C -0.13 -2.84 5.61 -26.73 -0.15 -2.99 16 3 C 0.17 3.84 4.92 -4.04 -0.02 3.82 16 4 N -0.59 -13.43 2.54 -173.24 -0.44 -13.87 16 5 C -0.26 -6.58 9.70 -15.06 -0.15 -6.72 16 6 H 0.07 1.87 7.94 -52.49 -0.42 1.46 16 7 C 0.00 0.06 4.89 -17.43 -0.09 -0.03 16 8 N -0.89 -23.67 8.62 55.49 0.48 -23.19 16 9 Si 0.90 20.82 29.62 -169.99 -5.04 15.78 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 C 0.14 2.54 5.82 -4.05 -0.02 2.51 16 14 C 0.09 1.52 5.88 -4.04 -0.02 1.50 16 15 N -0.71 -9.34 5.51 -61.25 -0.34 -9.68 16 16 C 0.55 7.84 7.78 -12.33 -0.10 7.75 16 17 O -0.53 -9.75 16.42 5.31 0.09 -9.67 16 18 C -0.18 -1.91 5.89 -104.82 -0.62 -2.53 16 19 C 0.16 1.42 10.71 -17.13 -0.18 1.24 16 20 N -0.48 -4.31 10.35 -12.91 -0.13 -4.44 16 21 C 0.17 1.34 10.59 -17.47 -0.18 1.15 16 22 C -0.25 -2.17 5.38 -104.53 -0.56 -2.73 16 23 C 0.52 4.42 3.33 36.00 0.12 4.54 16 24 F -0.17 -1.34 15.99 2.25 0.04 -1.31 16 25 F -0.17 -1.62 17.24 2.25 0.04 -1.58 16 26 F -0.17 -1.61 17.24 2.25 0.04 -1.57 16 27 C 0.03 0.33 9.30 -38.87 -0.36 -0.03 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.02 0.44 5.97 -51.93 -0.31 0.13 16 32 H 0.10 2.51 6.33 -51.93 -0.33 2.18 16 33 H 0.09 2.29 5.85 -51.93 -0.30 1.98 16 34 H 0.00 0.08 7.98 -51.93 -0.41 -0.33 16 35 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 36 H 0.05 0.86 8.03 -51.93 -0.42 0.44 16 37 H 0.04 0.70 7.95 -51.93 -0.41 0.29 16 38 H 0.07 1.37 5.92 -51.93 -0.31 1.07 16 39 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.39 3.68 6.54 -40.82 -0.27 3.41 16 41 H 0.17 1.00 6.42 -52.49 -0.34 0.67 16 42 H 0.18 0.93 7.15 -52.49 -0.38 0.56 16 43 H 0.16 1.66 7.74 -52.49 -0.41 1.26 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -29.57 369.26 -6.79 -36.36 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.12 Total: 2.35 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: -1.97 Total: 5.25 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: -0.43 Total: -51.18 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.11 Total: -4.47 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.04 Total: 15.78 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.57 -6.79 -36.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481150266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.505 kcal (2) G-P(sol) polarization free energy of solvation -29.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds