Wall clock time and date at job start Wed Apr 1 2020 03:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46712 * 2 1 4 4 N 1.46507 * 109.46956 * 180.02562 * 3 2 1 5 5 C 1.36939 * 119.99538 * 264.11493 * 4 3 2 6 6 H 1.07997 * 119.99819 * 188.01572 * 5 4 3 7 7 C 1.38813 * 120.00285 * 8.01636 * 5 4 3 8 8 N 1.31616 * 119.99862 * 25.64645 * 7 5 4 9 9 Si 1.86797 * 119.99878 * 205.64845 * 7 5 4 10 10 H 1.48502 * 109.47387 * 84.98536 * 9 7 5 11 11 H 1.48503 * 109.47042 * 204.98712 * 9 7 5 12 12 H 1.48498 * 109.47320 * 324.98105 * 9 7 5 13 13 C 1.46490 * 120.00178 * 84.11461 * 4 3 2 14 14 C 1.53003 * 109.47283 * 270.00178 * 13 4 3 15 15 N 1.46504 * 109.47204 * 180.02562 * 14 13 4 16 16 C 1.34774 * 119.99755 * 179.97438 * 15 14 13 17 17 O 1.21559 * 120.00095 * 0.02562 * 16 15 14 18 18 C 1.47843 * 119.99906 * 180.02562 * 16 15 14 19 19 C 1.39560 * 120.55839 * 359.97438 * 18 16 15 20 20 N 1.31666 * 120.56543 * 180.02562 * 19 18 16 21 21 C 1.31951 * 121.87825 * 0.02562 * 20 19 18 22 22 C 1.38314 * 121.08589 * 359.97438 * 21 20 19 23 23 C 1.50696 * 120.35215 * 179.97438 * 22 21 20 24 24 F 1.39899 * 109.47094 * 0.02562 * 23 22 21 25 25 F 1.39893 * 109.46960 * 120.00464 * 23 22 21 26 26 F 1.39904 * 109.47155 * 240.00442 * 23 22 21 27 27 C 1.38405 * 119.29813 * 0.02562 * 22 21 20 28 28 H 1.09003 * 109.47191 * 60.00443 * 1 2 3 29 29 H 1.09007 * 109.47139 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47349 * 299.99967 * 1 2 3 31 31 H 1.09002 * 109.47055 * 240.00732 * 2 1 3 32 32 H 1.08994 * 109.47085 * 120.00167 * 2 1 3 33 33 H 1.08999 * 109.47187 * 59.99933 * 3 2 1 34 34 H 1.09003 * 109.46931 * 299.99716 * 3 2 1 35 35 H 0.97007 * 120.00243 * 180.02562 * 8 7 5 36 36 H 1.09001 * 109.47208 * 150.00304 * 13 4 3 37 37 H 1.09000 * 109.47588 * 29.99973 * 13 4 3 38 38 H 1.08994 * 109.47100 * 59.99617 * 14 13 4 39 39 H 1.09000 * 109.47107 * 300.00119 * 14 13 4 40 40 H 0.96993 * 119.99584 * 0.02562 * 15 14 13 41 41 H 1.08001 * 119.71938 * 0.05333 * 19 18 16 42 42 H 1.07999 * 119.46130 * 180.02562 * 21 20 19 43 43 H 1.08001 * 120.85139 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1900 1.5641 1.1788 6 1 5.2621 1.6943 1.1696 7 6 3.5066 1.5198 2.3863 8 7 2.3565 0.8851 2.4685 9 14 4.2192 2.3609 3.8942 10 1 3.8323 3.7947 3.8906 11 1 3.6922 1.7091 5.1201 12 1 5.6997 2.2477 3.8710 13 6 4.2369 1.3128 -1.2629 14 6 4.4919 -0.1674 -1.5547 15 7 5.2244 -0.2972 -2.8168 16 6 5.5617 -1.5180 -3.2776 17 8 5.2577 -2.5113 -2.6463 18 6 6.3015 -1.6490 -4.5509 19 6 6.6559 -0.5165 -5.2854 20 7 7.3143 -0.6330 -6.4196 21 6 7.6627 -1.8093 -6.9054 22 6 7.3488 -2.9792 -6.2377 23 6 7.7544 -4.3138 -6.8079 24 9 8.4352 -4.1181 -8.0143 25 9 8.5920 -4.9729 -5.9018 26 9 6.6128 -5.0895 -7.0367 27 6 6.6573 -2.9111 -5.0407 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6765 1.9564 0.8900 34 1 1.6765 1.9563 -0.8900 35 1 1.8787 0.8544 3.3122 36 1 5.1894 1.8372 -1.1862 37 1 3.6476 1.7461 -2.0710 38 1 3.5395 -0.6919 -1.6313 39 1 5.0812 -0.6008 -0.7467 40 1 5.4673 0.4954 -3.3202 41 1 6.3883 0.4640 -4.9200 42 1 8.2026 -1.8595 -7.8394 43 1 6.3988 -3.8087 -4.4986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481150266.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:25 Heat of formation + Delta-G solvation = -141.460706 kcal Electronic energy + Delta-G solvation = -29659.847345 eV Core-core repulsion = 24904.488012 eV Total energy + Delta-G solvation = -4755.359333 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -51.28969 -48.79747 -48.75587 -41.93662 -40.27301 -38.32963 -36.07890 -34.37324 -33.75464 -33.70474 -32.83988 -29.61292 -27.59004 -27.34878 -26.17394 -24.66314 -24.20281 -22.49725 -22.09500 -21.60535 -19.93762 -19.62189 -19.61332 -18.75459 -18.26334 -18.03940 -17.56520 -16.94765 -16.67174 -16.44214 -15.78987 -15.63749 -15.49708 -15.48005 -15.17623 -15.16768 -15.00931 -14.95042 -14.89277 -14.64192 -14.48576 -14.28553 -14.15563 -13.98903 -13.42223 -13.40275 -13.02091 -12.79729 -12.63857 -12.39016 -12.17393 -11.82196 -11.69762 -11.60067 -11.48698 -11.43639 -11.08687 -10.82390 -10.73786 -10.31432 -10.10308 -8.84457 -7.78441 -5.10496 -0.77006 -0.39752 1.41268 1.50400 1.53842 1.57404 1.59265 1.93609 2.42030 2.48865 2.57614 2.83032 3.06060 3.25129 3.30138 3.41300 3.45295 3.55670 3.80410 3.84730 4.08466 4.24392 4.33835 4.52635 4.54989 4.63814 4.66284 4.72229 4.86882 4.98392 5.05735 5.08211 5.11841 5.25822 5.40969 5.47141 5.54213 5.67468 5.89795 6.21535 6.37497 6.39531 6.45114 7.07630 7.23901 7.94409 8.32871 9.22334 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002095 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.314558 B =13364.459503 C =13688.273723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.121 4.121 3 C 0.174 3.826 4 N -0.607 5.607 5 C -0.262 4.262 6 H 0.075 0.925 7 C -0.047 4.047 8 N -0.908 5.908 9 Si 0.952 3.048 10 H -0.288 1.288 11 H -0.303 1.303 12 H -0.277 1.277 13 C 0.144 3.856 14 C 0.109 3.891 15 N -0.698 5.698 16 C 0.557 3.443 17 O -0.580 6.580 18 C -0.191 4.191 19 C 0.180 3.820 20 N -0.487 5.487 21 C 0.183 3.817 22 C -0.249 4.249 23 C 0.524 3.476 24 F -0.166 7.166 25 F -0.178 7.178 26 F -0.178 7.178 27 C 0.026 3.974 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.040 0.960 31 H 0.024 0.976 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.028 0.972 35 H 0.245 0.755 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.048 0.952 39 H 0.034 0.966 40 H 0.417 0.583 41 H 0.202 0.798 42 H 0.204 0.796 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.358 -3.733 -22.632 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.160 4.160 3 C 0.049 3.951 4 N -0.327 5.327 5 C -0.392 4.392 6 H 0.092 0.908 7 C -0.243 4.243 8 N -0.554 5.554 9 Si 0.782 3.218 10 H -0.215 1.215 11 H -0.230 1.230 12 H -0.202 1.202 13 C 0.016 3.984 14 C -0.017 4.017 15 N -0.350 5.350 16 C 0.343 3.657 17 O -0.460 6.460 18 C -0.197 4.197 19 C 0.023 3.977 20 N -0.194 5.194 21 C 0.026 3.974 22 C -0.252 4.252 23 C 0.469 3.531 24 F -0.147 7.147 25 F -0.160 7.160 26 F -0.159 7.159 27 C 0.000 4.000 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.046 0.954 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.255 0.745 41 H 0.218 0.782 42 H 0.221 0.779 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 9.267 -3.651 -22.485 24.592 hybrid contribution 0.056 -0.887 1.641 1.866 sum 9.323 -4.539 -20.844 23.281 Atomic orbital electron populations 1.21535 0.96266 1.00300 1.00632 1.22020 0.94965 0.99664 0.99386 1.20825 0.81652 0.94638 0.98012 1.44417 1.02306 1.83774 1.02225 1.19493 0.92414 1.42679 0.84616 0.90754 1.25335 0.98369 1.01013 0.99539 1.70330 1.18173 1.42072 1.24859 0.85513 0.77892 0.78689 0.79708 1.21521 1.23040 1.20241 1.21121 0.97294 0.91468 0.88486 1.22290 0.94657 1.01339 0.83460 1.45788 1.56871 1.07905 1.24462 1.18308 0.78987 0.83651 0.84736 1.90811 1.56491 1.38649 1.60090 1.20836 1.05603 0.95578 0.97661 1.23768 0.87152 0.99010 0.87818 1.68087 1.12329 1.26225 1.12769 1.23436 0.90300 0.85281 0.98413 1.20993 1.09441 0.94843 0.99950 1.17859 0.74805 0.84552 0.75874 1.93196 1.80344 1.94997 1.46158 1.93243 1.72381 1.82896 1.67438 1.93246 1.50756 1.77308 1.94602 1.21517 0.87899 0.98858 0.91744 0.92639 0.93719 0.94076 0.95735 0.92490 0.92225 0.95390 0.94528 0.91563 0.90718 0.93393 0.94769 0.74485 0.78155 0.77947 0.83267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 9.91 71.98 0.71 -4.05 16 2 C -0.12 -5.29 5.61 30.59 0.17 -5.12 16 3 C 0.17 7.77 4.92 86.38 0.42 8.20 16 4 N -0.61 -27.38 2.54 -701.99 -1.78 -29.16 16 5 C -0.26 -13.39 9.70 84.03 0.81 -12.58 16 6 H 0.07 3.72 7.94 -2.91 -0.02 3.69 16 7 C -0.05 -2.47 4.89 84.86 0.41 -2.06 16 8 N -0.91 -49.82 8.62 21.65 0.19 -49.64 16 9 Si 0.95 43.51 29.62 68.60 2.03 45.54 16 10 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 11 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 13 C 0.14 4.86 5.82 86.38 0.50 5.36 16 14 C 0.11 3.77 5.88 86.38 0.51 4.28 16 15 N -0.70 -17.28 5.51 -465.96 -2.57 -19.85 16 16 C 0.56 15.52 7.78 86.79 0.68 16.20 16 17 O -0.58 -22.09 16.42 -3.90 -0.06 -22.15 16 18 C -0.19 -3.85 5.89 -19.99 -0.12 -3.96 16 19 C 0.18 2.57 10.71 85.04 0.91 3.48 16 20 N -0.49 -7.09 10.35 -194.76 -2.01 -9.11 16 21 C 0.18 2.32 10.59 84.69 0.90 3.22 16 22 C -0.25 -3.89 5.38 -19.81 -0.11 -4.00 16 23 C 0.52 8.16 3.33 71.23 0.24 8.40 16 24 F -0.17 -2.18 15.99 44.97 0.72 -1.46 16 25 F -0.18 -3.21 17.24 44.97 0.78 -2.44 16 26 F -0.18 -3.17 17.24 44.97 0.78 -2.40 16 27 C 0.03 0.52 9.30 22.73 0.21 0.73 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.02 1.03 5.97 -2.39 -0.01 1.02 16 32 H 0.06 3.00 6.33 -2.39 -0.02 2.98 16 33 H 0.06 3.05 5.85 -2.39 -0.01 3.04 16 34 H 0.03 1.10 7.98 -2.39 -0.02 1.08 16 35 H 0.25 13.34 8.31 -92.70 -0.77 12.57 16 36 H 0.07 2.06 8.03 -2.39 -0.02 2.04 16 37 H 0.07 2.10 7.95 -2.39 -0.02 2.09 16 38 H 0.05 1.89 5.92 -2.39 -0.01 1.88 16 39 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.42 6.48 6.54 -92.71 -0.61 5.88 16 41 H 0.20 1.50 6.42 -2.91 -0.02 1.48 16 42 H 0.20 1.37 7.15 -2.91 -0.02 1.35 16 43 H 0.15 3.22 7.74 -2.91 -0.02 3.20 16 Total: -1.00 -66.29 369.26 4.79 -61.50 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.47 Total: 11.07 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: 6.26 Total: 18.09 kcal Atomic # 7 Polarization: -101.58 SS G_CDS: -6.18 Total: -107.75 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.06 Total: -22.15 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 2.27 Total: -6.30 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -66.29 4.79 -61.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481150266.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.960 kcal (2) G-P(sol) polarization free energy of solvation -66.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds