Wall clock time and date at job start Wed Apr 1 2020 03:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47087 * 2 1 4 4 C 1.53006 * 109.47148 * 119.99991 * 2 1 3 5 5 H 1.09004 * 109.46901 * 300.00262 * 4 2 1 6 6 C 1.52993 * 109.47133 * 180.02562 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21545 * 119.99576 * 359.97438 * 8 7 6 10 10 C 1.47841 * 119.99992 * 179.97438 * 8 7 6 11 11 C 1.40028 * 120.55758 * 179.97438 * 10 8 7 12 12 C 1.38357 * 118.28457 * 180.02562 * 11 10 8 13 13 C 1.38342 * 119.30615 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.45816 * 180.02562 * 13 12 11 15 15 F 1.39902 * 109.47321 * 90.00029 * 14 13 12 16 16 F 1.39907 * 109.46727 * 209.99620 * 14 13 12 17 17 F 1.39896 * 109.47004 * 329.99511 * 14 13 12 18 18 N 1.31926 * 121.08129 * 0.02562 * 13 12 11 19 19 C 1.31696 * 121.87983 * 359.65503 * 18 13 12 20 20 N 1.46493 * 109.46887 * 59.99945 * 4 2 1 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 4 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 4 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08995 * 109.47266 * 299.99829 * 1 2 3 30 30 H 1.09000 * 109.47204 * 59.99887 * 1 2 3 31 31 H 1.09003 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47266 * 240.00171 * 2 1 3 33 33 H 1.08997 * 109.47066 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47191 * 300.00121 * 3 2 1 35 35 H 1.09004 * 109.47044 * 59.99688 * 3 2 1 36 36 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 37 37 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 38 38 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 39 39 H 1.07997 * 120.85230 * 0.02562 * 11 10 8 40 40 H 1.08005 * 120.34304 * 179.97438 * 12 11 10 41 41 H 1.07998 * 119.71884 * 180.31365 * 19 18 13 42 42 H 0.97000 * 120.00040 * 94.99981 * 20 4 2 43 43 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5699 -0.7207 1.2496 7 7 4.0584 -1.5129 2.3809 8 6 5.3835 -1.6533 2.5833 9 8 6.1732 -1.1230 1.8267 10 6 5.8763 -2.4524 3.7254 11 6 7.2504 -2.6064 3.9462 12 6 7.6595 -3.3645 5.0289 13 6 6.7073 -3.9410 5.8503 14 6 7.1491 -4.7670 7.0309 15 9 7.2843 -3.9422 8.1528 16 9 6.1944 -5.7559 7.2915 17 9 8.3786 -5.3698 6.7443 18 7 5.4189 -3.7796 5.6171 19 6 4.9800 -3.0623 4.6036 20 7 1.5517 -2.1024 1.2492 21 6 0.3101 -2.3897 1.7504 22 1 -0.3093 -1.5980 2.1454 23 6 -0.1523 -3.6986 1.7508 24 7 -1.3435 -3.9754 2.2375 25 14 0.9192 -5.0681 1.0684 26 1 0.6410 -5.2389 -0.3803 27 1 2.3499 -4.7193 1.2599 28 1 0.6186 -6.3346 1.7829 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.9336 -1.1548 0.3182 37 1 3.9330 0.3032 1.3393 38 1 3.4281 -1.9358 2.9849 39 1 7.9722 -2.1452 3.2884 40 1 8.7113 -3.5054 5.2301 41 1 3.9173 -2.9491 4.4482 42 1 2.1078 -2.8135 0.8942 43 1 -1.6651 -4.8906 2.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482546049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:28 Heat of formation + Delta-G solvation = -141.036276 kcal Electronic energy + Delta-G solvation = -30238.214441 eV Core-core repulsion = 25482.873513 eV Total energy + Delta-G solvation = -4755.340928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.46114 -48.01695 -47.87863 -41.06247 -39.35050 -37.49545 -34.36449 -33.23646 -33.19831 -32.61221 -30.91471 -28.74124 -27.08292 -26.29693 -24.38346 -24.04566 -23.05840 -21.81270 -20.78648 -19.65594 -19.14084 -18.84571 -18.76944 -18.30565 -17.30161 -16.99395 -15.69343 -15.62105 -15.51198 -15.10080 -14.91784 -14.75682 -14.67007 -14.36130 -14.16942 -14.14645 -14.06267 -14.04310 -13.73246 -13.67484 -13.48167 -13.14190 -12.97321 -12.56738 -12.38543 -12.25714 -11.71758 -11.39067 -11.17782 -10.96465 -10.79256 -10.48444 -10.47768 -10.34111 -10.22532 -10.08234 -9.90375 -9.89097 -9.56957 -9.06031 -8.98217 -7.43454 -5.89092 -3.26372 -0.09909 0.65828 2.08306 2.44921 3.00970 3.18950 3.26286 3.30477 3.31311 3.38926 3.52440 4.05187 4.14754 4.26178 4.42189 4.47114 4.51580 4.59133 5.00123 5.04014 5.12955 5.30923 5.35160 5.49484 5.54058 5.59545 5.63602 5.79522 5.87044 5.94196 6.08661 6.18929 6.29521 6.34795 6.47958 6.48722 6.68187 6.91701 7.12401 7.26947 7.46125 7.85779 8.06183 8.28828 9.05975 9.78095 9.96416 11.28223 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.003124 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.138108 B = 8961.297945 C =10639.763383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.150 4.150 4 C 0.174 3.826 5 H 0.064 0.936 6 C 0.109 3.891 7 N -0.705 5.705 8 C 0.557 3.443 9 O -0.538 6.538 10 C -0.151 4.151 11 C -0.016 4.016 12 C -0.131 4.131 13 C 0.052 3.948 14 C 0.523 3.477 15 F -0.169 7.169 16 F -0.161 7.161 17 F -0.171 7.171 18 N -0.442 5.442 19 C 0.144 3.856 20 N -0.747 5.747 21 C -0.246 4.246 22 H 0.096 0.904 23 C 0.011 3.989 24 N -0.927 5.927 25 Si 0.878 3.122 26 H -0.285 1.285 27 H -0.279 1.279 28 H -0.291 1.291 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.410 0.590 39 H 0.162 0.838 40 H 0.156 0.844 41 H 0.179 0.821 42 H 0.362 0.638 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.862 4.114 5.055 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.130 4.130 3 C -0.208 4.208 4 C 0.064 3.936 5 H 0.082 0.918 6 C -0.015 4.015 7 N -0.356 5.356 8 C 0.341 3.659 9 O -0.416 6.416 10 C -0.156 4.156 11 C -0.042 4.042 12 C -0.151 4.151 13 C -0.087 4.087 14 C 0.468 3.532 15 F -0.151 7.151 16 F -0.142 7.142 17 F -0.152 7.152 18 N -0.149 5.149 19 C -0.015 4.015 20 N -0.390 5.390 21 C -0.376 4.376 22 H 0.113 0.887 23 C -0.185 4.185 24 N -0.574 5.574 25 Si 0.708 3.292 26 H -0.211 1.211 27 H -0.205 1.205 28 H -0.217 1.217 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.248 0.752 39 H 0.179 0.821 40 H 0.174 0.826 41 H 0.196 0.804 42 H 0.195 0.805 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 17.543 4.069 5.227 18.752 hybrid contribution 0.909 -1.110 -0.640 1.571 sum 18.453 2.959 4.586 19.243 Atomic orbital electron populations 1.21826 0.94275 1.04317 0.99294 1.21695 0.97399 0.94523 0.99364 1.21947 1.00348 0.97187 1.01292 1.20551 0.88811 0.87272 0.96983 0.91762 1.21916 0.95972 0.95279 0.88333 1.45986 1.06171 1.52354 1.31091 1.17876 0.83036 0.80758 0.84196 1.90776 1.55455 1.48582 1.46794 1.21377 0.95434 1.00802 0.97992 1.21768 0.95084 0.92682 0.94703 1.21849 1.01375 0.97089 0.94811 1.21173 0.91690 0.99670 0.96148 1.17839 0.75038 0.78306 0.82040 1.93249 1.95642 1.72092 1.54067 1.93265 1.63710 1.62727 1.94470 1.93213 1.44333 1.84236 1.93445 1.67233 1.14569 1.14079 1.19067 1.23216 1.00971 0.89601 0.87742 1.42856 1.18540 1.02481 1.75168 1.19027 0.91301 0.94139 1.33122 0.88660 1.24650 0.96316 0.96845 1.00717 1.69682 1.17751 1.19246 1.50701 0.86681 0.80181 0.83187 0.79117 1.21127 1.20495 1.21736 0.93721 0.94924 0.89245 0.91956 0.93097 0.93338 0.92948 0.91424 0.90618 0.75210 0.82068 0.82640 0.80415 0.80531 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 8.26 37.16 0.31 -2.07 16 2 C -0.11 -1.64 2.69 -90.62 -0.24 -1.88 16 3 C -0.15 -1.86 8.84 37.16 0.33 -1.53 16 4 C 0.17 2.78 2.18 -67.93 -0.15 2.63 16 5 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 6 C 0.11 1.54 4.73 -4.05 -0.02 1.52 16 7 N -0.70 -9.73 5.34 -61.26 -0.33 -10.06 16 8 C 0.56 7.71 7.78 -12.33 -0.10 7.61 16 9 O -0.54 -8.69 16.42 5.33 0.09 -8.60 16 10 C -0.15 -1.79 5.89 -104.82 -0.62 -2.41 16 11 C -0.02 -0.16 9.72 -38.87 -0.38 -0.53 16 12 C -0.13 -1.17 9.42 -39.50 -0.37 -1.54 16 13 C 0.05 0.59 6.30 -82.51 -0.52 0.07 16 14 C 0.52 5.62 3.43 36.01 0.12 5.75 16 15 F -0.17 -1.83 17.30 2.25 0.04 -1.79 16 16 F -0.16 -2.00 17.03 2.25 0.04 -1.96 16 17 F -0.17 -1.62 16.43 2.25 0.04 -1.59 16 18 N -0.44 -5.77 9.94 -9.14 -0.09 -5.86 16 19 C 0.14 1.75 10.71 -17.13 -0.18 1.57 16 20 N -0.75 -14.83 4.24 -53.43 -0.23 -15.06 16 21 C -0.25 -5.98 8.05 -15.06 -0.12 -6.10 16 22 H 0.10 2.51 7.62 -52.49 -0.40 2.11 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.21 16 24 N -0.93 -27.02 13.97 55.49 0.78 -26.25 16 25 Si 0.88 20.58 27.74 -169.99 -4.72 15.87 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.07 6.51 56.52 0.37 -5.71 16 28 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 1.85 6.01 -51.93 -0.31 1.53 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.58 6.54 -51.93 -0.34 0.24 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.08 0.99 6.71 -51.93 -0.35 0.64 16 38 H 0.41 5.60 6.21 -40.82 -0.25 5.34 16 39 H 0.16 1.35 7.74 -52.49 -0.41 0.95 16 40 H 0.16 0.92 7.59 -52.48 -0.40 0.52 16 41 H 0.18 2.01 6.42 -52.49 -0.34 1.67 16 42 H 0.36 7.34 5.66 -40.82 -0.23 7.11 16 43 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -29.58 368.37 -6.02 -35.60 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -5.15 Total: 10.86 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -2.04 Total: 3.28 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: 0.13 Total: -57.23 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 9 Polarization: -5.45 SS G_CDS: 0.11 Total: -5.33 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.72 Total: 15.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.58 -6.02 -35.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482546049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.435 kcal (2) G-P(sol) polarization free energy of solvation -29.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds