Wall clock time and date at job start Wed Apr 1 2020 03:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47087 * 2 1 4 4 C 1.53006 * 109.47148 * 119.99991 * 2 1 3 5 5 H 1.09004 * 109.46901 * 300.00262 * 4 2 1 6 6 C 1.52993 * 109.47133 * 180.02562 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21545 * 119.99576 * 359.97438 * 8 7 6 10 10 C 1.47841 * 119.99992 * 179.97438 * 8 7 6 11 11 C 1.40028 * 120.55758 * 179.97438 * 10 8 7 12 12 C 1.38357 * 118.28457 * 180.02562 * 11 10 8 13 13 C 1.38342 * 119.30615 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.45816 * 180.02562 * 13 12 11 15 15 F 1.39902 * 109.47321 * 90.00029 * 14 13 12 16 16 F 1.39907 * 109.46727 * 209.99620 * 14 13 12 17 17 F 1.39896 * 109.47004 * 329.99511 * 14 13 12 18 18 N 1.31926 * 121.08129 * 0.02562 * 13 12 11 19 19 C 1.31696 * 121.87983 * 359.65503 * 18 13 12 20 20 N 1.46493 * 109.46887 * 59.99945 * 4 2 1 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 4 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 4 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08995 * 109.47266 * 299.99829 * 1 2 3 30 30 H 1.09000 * 109.47204 * 59.99887 * 1 2 3 31 31 H 1.09003 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47266 * 240.00171 * 2 1 3 33 33 H 1.08997 * 109.47066 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47191 * 300.00121 * 3 2 1 35 35 H 1.09004 * 109.47044 * 59.99688 * 3 2 1 36 36 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 37 37 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 38 38 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 39 39 H 1.07997 * 120.85230 * 0.02562 * 11 10 8 40 40 H 1.08005 * 120.34304 * 179.97438 * 12 11 10 41 41 H 1.07998 * 119.71884 * 180.31365 * 19 18 13 42 42 H 0.97000 * 120.00040 * 94.99981 * 20 4 2 43 43 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 3.5699 -0.7207 1.2496 7 7 4.0584 -1.5129 2.3809 8 6 5.3835 -1.6533 2.5833 9 8 6.1732 -1.1230 1.8267 10 6 5.8763 -2.4524 3.7254 11 6 7.2504 -2.6064 3.9462 12 6 7.6595 -3.3645 5.0289 13 6 6.7073 -3.9410 5.8503 14 6 7.1491 -4.7670 7.0309 15 9 7.2843 -3.9422 8.1528 16 9 6.1944 -5.7559 7.2915 17 9 8.3786 -5.3698 6.7443 18 7 5.4189 -3.7796 5.6171 19 6 4.9800 -3.0623 4.6036 20 7 1.5517 -2.1024 1.2492 21 6 0.3101 -2.3897 1.7504 22 1 -0.3093 -1.5980 2.1454 23 6 -0.1523 -3.6986 1.7508 24 7 -1.3435 -3.9754 2.2375 25 14 0.9192 -5.0681 1.0684 26 1 0.6410 -5.2389 -0.3803 27 1 2.3499 -4.7193 1.2599 28 1 0.6186 -6.3346 1.7829 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 3.9336 -1.1548 0.3182 37 1 3.9330 0.3032 1.3393 38 1 3.4281 -1.9358 2.9849 39 1 7.9722 -2.1452 3.2884 40 1 8.7113 -3.5054 5.2301 41 1 3.9173 -2.9491 4.4482 42 1 2.1078 -2.8135 0.8942 43 1 -1.6651 -4.8906 2.2415 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482546049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:27 Heat of formation + Delta-G solvation = -160.056757 kcal Electronic energy + Delta-G solvation = -30239.039231 eV Core-core repulsion = 25482.873513 eV Total energy + Delta-G solvation = -4756.165718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.30247 -48.82480 -48.76753 -41.97776 -40.42803 -38.84498 -35.53933 -34.94470 -34.08682 -33.49765 -32.66512 -30.00870 -28.09221 -27.52568 -25.48423 -25.21770 -24.23410 -23.15995 -21.87099 -20.99071 -20.02127 -19.74215 -19.67900 -19.60544 -18.72507 -17.93444 -17.07991 -16.69675 -16.36213 -16.34802 -15.96799 -15.81282 -15.65575 -15.53852 -15.20360 -15.15521 -14.94650 -14.93146 -14.91193 -14.76763 -14.64088 -14.34709 -14.25687 -14.19481 -13.47948 -13.23345 -12.97788 -12.92451 -12.83806 -12.51501 -12.24659 -11.97269 -11.78586 -11.53711 -11.42358 -11.32320 -11.31361 -10.92861 -10.83001 -10.75995 -10.13587 -9.26981 -7.94623 -5.26785 -0.96977 -0.14036 1.24511 1.38330 1.40969 1.47011 1.48449 1.97284 2.33783 2.37662 2.51802 2.70206 3.21641 3.30971 3.37326 3.40089 3.54480 3.59301 3.70333 3.73965 3.85277 4.24975 4.29014 4.31918 4.44739 4.51891 4.63562 4.72075 4.77373 4.92537 4.97199 5.05104 5.07774 5.17588 5.25339 5.29597 5.45152 5.64173 5.77911 5.89182 6.26283 6.27821 6.36627 6.97185 7.14403 7.88481 8.06452 9.26314 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011439 B = 0.003124 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.138108 B = 8961.297945 C =10639.763383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.104 4.104 3 C -0.142 4.142 4 C 0.173 3.827 5 H 0.061 0.939 6 C 0.117 3.883 7 N -0.707 5.707 8 C 0.562 3.438 9 O -0.560 6.560 10 C -0.159 4.159 11 C -0.008 4.008 12 C -0.114 4.114 13 C 0.041 3.959 14 C 0.527 3.473 15 F -0.170 7.170 16 F -0.174 7.174 17 F -0.161 7.161 18 N -0.470 5.470 19 C 0.137 3.863 20 N -0.747 5.747 21 C -0.202 4.202 22 H 0.070 0.930 23 C -0.056 4.056 24 N -0.981 5.981 25 Si 0.935 3.065 26 H -0.290 1.290 27 H -0.251 1.251 28 H -0.307 1.307 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.411 0.589 39 H 0.181 0.819 40 H 0.191 0.809 41 H 0.178 0.822 42 H 0.363 0.637 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.051 5.232 4.427 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.126 4.126 3 C -0.200 4.200 4 C 0.065 3.935 5 H 0.079 0.921 6 C -0.006 4.006 7 N -0.358 5.358 8 C 0.348 3.652 9 O -0.440 6.440 10 C -0.165 4.165 11 C -0.034 4.034 12 C -0.133 4.133 13 C -0.098 4.098 14 C 0.471 3.529 15 F -0.151 7.151 16 F -0.155 7.155 17 F -0.142 7.142 18 N -0.179 5.179 19 C -0.022 4.022 20 N -0.390 5.390 21 C -0.333 4.333 22 H 0.088 0.912 23 C -0.247 4.247 24 N -0.633 5.633 25 Si 0.765 3.235 26 H -0.217 1.217 27 H -0.175 1.175 28 H -0.235 1.235 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.248 0.752 39 H 0.198 0.802 40 H 0.209 0.791 41 H 0.195 0.805 42 H 0.196 0.804 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 20.793 5.232 4.589 21.927 hybrid contribution -0.048 -1.328 -0.423 1.394 sum 20.745 3.904 4.166 21.516 Atomic orbital electron populations 1.21731 0.95908 1.01663 0.99975 1.21601 0.95831 0.96626 0.98513 1.21865 1.01267 0.94734 1.02118 1.20706 0.90376 0.85025 0.97373 0.92140 1.21810 0.93914 0.96412 0.88507 1.46001 1.06459 1.52364 1.30971 1.18040 0.82590 0.80338 0.84248 1.90763 1.55842 1.49667 1.47754 1.21255 0.96412 1.01256 0.97528 1.22036 0.94437 0.92070 0.94862 1.22175 1.02608 0.95219 0.93316 1.21391 0.91680 1.00060 0.96657 1.17798 0.75092 0.78012 0.81949 1.93247 1.95640 1.72075 1.54161 1.93239 1.64387 1.63303 1.94564 1.93232 1.43569 1.84066 1.93353 1.67178 1.15898 1.15010 1.19765 1.23198 1.01179 0.89903 0.87899 1.42830 1.16955 1.04450 1.74722 1.18923 0.91916 0.92867 1.29613 0.91248 1.25238 0.97502 0.99253 1.02728 1.69843 1.20132 1.19070 1.54206 0.85718 0.80232 0.79922 0.77635 1.21692 1.17530 1.23469 0.94241 0.93110 0.93411 0.91929 0.91539 0.92169 0.92562 0.91511 0.88820 0.75185 0.80208 0.79139 0.80496 0.80382 0.93792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.52 8.26 71.98 0.59 -3.93 16 2 C -0.10 -2.96 2.69 -10.79 -0.03 -2.99 16 3 C -0.14 -3.06 8.84 71.98 0.64 -2.43 16 4 C 0.17 5.28 2.18 44.99 0.10 5.38 16 5 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 6 C 0.12 3.03 4.73 86.38 0.41 3.44 16 7 N -0.71 -18.20 5.34 -465.99 -2.49 -20.69 16 8 C 0.56 14.37 7.78 86.78 0.68 15.04 16 9 O -0.56 -16.68 16.42 -3.86 -0.06 -16.74 16 10 C -0.16 -3.47 5.89 -19.99 -0.12 -3.59 16 11 C -0.01 -0.13 9.72 22.73 0.22 0.09 16 12 C -0.11 -1.67 9.42 22.32 0.21 -1.46 16 13 C 0.04 0.84 6.30 42.57 0.27 1.11 16 14 C 0.53 10.48 3.43 71.24 0.24 10.73 16 15 F -0.17 -3.42 17.30 44.97 0.78 -2.64 16 16 F -0.17 -4.20 17.03 44.97 0.77 -3.43 16 17 F -0.16 -2.67 16.43 44.97 0.74 -1.93 16 18 N -0.47 -11.84 9.94 -182.82 -1.82 -13.66 16 19 C 0.14 3.21 10.71 85.02 0.91 4.12 16 20 N -0.75 -29.01 4.24 -322.95 -1.37 -30.38 16 21 C -0.20 -9.95 8.05 84.03 0.68 -9.28 16 22 H 0.07 3.77 7.62 -2.91 -0.02 3.75 16 23 C -0.06 -3.02 5.50 84.86 0.47 -2.55 16 24 N -0.98 -59.47 13.97 21.65 0.30 -59.17 16 25 Si 0.94 43.04 27.74 68.60 1.90 44.94 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.25 -10.19 6.51 99.48 0.65 -9.54 16 28 H -0.31 -14.90 7.11 99.48 0.71 -14.19 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.99 6.01 -2.39 -0.01 1.97 16 32 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.07 1.25 6.54 -2.39 -0.02 1.24 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.09 2.14 6.71 -2.39 -0.02 2.12 16 38 H 0.41 10.68 6.21 -92.71 -0.58 10.10 16 39 H 0.18 2.35 7.74 -2.91 -0.02 2.33 16 40 H 0.19 1.40 7.59 -2.91 -0.02 1.38 16 41 H 0.18 3.95 6.42 -2.91 -0.02 3.94 16 42 H 0.36 14.13 5.66 -92.71 -0.52 13.61 16 43 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -65.28 368.37 3.94 -61.34 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.08 Total: 28.67 kcal Atomic # 6 Polarization: 8.43 SS G_CDS: 5.26 Total: 13.69 kcal Atomic # 7 Polarization: -118.52 SS G_CDS: -5.37 Total: -123.90 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.06 Total: -16.74 kcal Atomic # 9 Polarization: -10.29 SS G_CDS: 2.28 Total: -8.01 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.90 Total: 44.94 kcal Total: -65.28 3.94 -61.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482546049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.713 kcal (2) G-P(sol) polarization free energy of solvation -65.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds