Wall clock time and date at job start Wed Apr 1 2020 03:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47198 * 120.00063 * 2 1 3 5 5 H 1.09005 * 109.47107 * 299.99574 * 4 2 1 6 6 C 1.52997 * 109.47380 * 59.99885 * 4 2 1 7 7 N 1.46496 * 109.47707 * 175.00249 * 6 4 2 8 8 C 1.34767 * 120.00520 * 180.02562 * 7 6 4 9 9 O 1.21554 * 120.00157 * 359.97438 * 8 7 6 10 10 C 1.47840 * 120.00407 * 179.97438 * 8 7 6 11 11 C 1.39560 * 120.55741 * 359.97438 * 10 8 7 12 12 N 1.31668 * 120.56413 * 179.69864 * 11 10 8 13 13 C 1.31960 * 121.87959 * 0.27992 * 12 11 10 14 14 C 1.38305 * 121.08339 * 0.02562 * 13 12 11 15 15 C 1.38406 * 119.30286 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.85463 * 180.02562 * 15 14 13 17 17 F 1.39903 * 109.47158 * 359.97438 * 16 15 14 18 18 F 1.39900 * 109.47137 * 120.00195 * 16 15 14 19 19 F 1.39901 * 109.47087 * 239.99921 * 16 15 14 20 20 N 1.46500 * 109.47271 * 180.02562 * 4 2 1 21 21 C 1.36937 * 120.00365 * 85.00101 * 20 4 2 22 22 H 1.07998 * 119.99528 * 359.97438 * 21 20 4 23 23 C 1.38807 * 120.00225 * 179.97438 * 21 20 4 24 24 N 1.31614 * 120.00249 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00003 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 89.99982 * 25 23 21 27 27 H 1.48501 * 109.47132 * 210.00208 * 25 23 21 28 28 H 1.48505 * 109.47141 * 329.99974 * 25 23 21 29 29 H 1.09000 * 109.47161 * 300.00368 * 1 2 3 30 30 H 1.09007 * 109.46957 * 60.00292 * 1 2 3 31 31 H 1.08997 * 109.47611 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47603 * 240.00166 * 2 1 3 33 33 H 1.08998 * 109.47160 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47182 * 299.99683 * 3 2 1 35 35 H 1.08998 * 109.46851 * 59.99844 * 3 2 1 36 36 H 1.09004 * 109.47056 * 55.00049 * 6 4 2 37 37 H 1.09000 * 109.46835 * 295.00853 * 6 4 2 38 38 H 0.97010 * 119.99513 * 359.97438 * 7 6 4 39 39 H 1.08002 * 119.72087 * 359.97438 * 11 10 8 40 40 H 1.08001 * 119.45875 * 179.97438 * 13 12 11 41 41 H 1.07995 * 120.35157 * 179.97438 * 14 13 12 42 42 H 0.97000 * 119.99946 * 264.99734 * 20 4 2 43 43 H 0.96996 * 120.00381 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 7 2.1140 -2.8882 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0430 -4.7528 1.8253 10 6 2.3958 -4.9160 3.7236 11 6 3.2734 -4.2754 4.5994 12 7 3.7943 -4.9249 5.6195 13 6 3.5175 -6.1940 5.8522 14 6 2.6620 -6.9013 5.0272 15 6 2.0880 -6.2642 3.9408 16 6 1.1504 -7.0011 3.0194 17 9 1.0077 -8.3219 3.4582 18 9 -0.0984 -6.3705 3.0230 19 9 1.6720 -6.9953 1.7213 20 7 3.5049 -0.7207 1.2495 21 6 4.1892 0.3542 1.7510 22 1 3.6488 1.2018 2.1460 23 6 5.5773 0.3544 1.7518 24 7 6.2358 -0.6782 1.2701 25 14 6.5107 1.8211 2.4353 26 1 6.7574 1.6187 3.8856 27 1 7.8086 1.9560 1.7265 28 1 5.7080 3.0548 2.2372 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.8183 -2.6511 0.3179 37 1 0.4436 -2.1650 1.3387 38 1 2.7232 -2.4350 2.9844 39 1 3.5241 -3.2368 4.4418 40 1 3.9672 -6.6888 6.7004 41 1 2.4441 -7.9397 5.2285 42 1 3.9903 -1.4818 0.8945 43 1 7.2058 -0.6779 1.2703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482556164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:56 Heat of formation + Delta-G solvation = -139.918438 kcal Electronic energy + Delta-G solvation = -31327.861502 eV Core-core repulsion = 26572.569047 eV Total energy + Delta-G solvation = -4755.292455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.05752 -47.63948 -47.38422 -40.89653 -39.12104 -37.30311 -34.25765 -33.51608 -33.17474 -31.97132 -30.40259 -28.26495 -26.83039 -26.12644 -24.87647 -23.75917 -22.74604 -21.86679 -20.65466 -19.49160 -18.93270 -18.48857 -18.34189 -17.69116 -16.98531 -16.71502 -15.61442 -15.51974 -15.40675 -15.13889 -14.97015 -14.32402 -14.28756 -14.10132 -14.00831 -13.89456 -13.84461 -13.58529 -13.53856 -13.47125 -13.27582 -12.85021 -12.64484 -12.28681 -12.25107 -12.06821 -11.66146 -11.12804 -11.00790 -10.85270 -10.73557 -10.52532 -10.39235 -10.29267 -10.13469 -10.00225 -9.69071 -9.61426 -9.58887 -8.98287 -8.78685 -7.09829 -5.87401 -3.17404 0.17495 0.55026 2.51132 2.75689 3.17056 3.36383 3.42905 3.44466 3.47481 3.61951 3.90648 3.98572 4.40640 4.44529 4.48620 4.52138 4.70860 4.94070 5.16508 5.19940 5.28924 5.33121 5.47361 5.53540 5.58998 5.70161 5.83081 5.94041 6.06205 6.12679 6.19553 6.32966 6.37984 6.47608 6.57359 6.57660 6.79021 7.02019 7.26061 7.43920 7.61920 7.64223 8.24362 8.29697 9.41860 9.95297 10.31257 11.34103 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.003607 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.102193 B = 7761.471986 C = 9529.156240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.169 3.831 5 H 0.055 0.945 6 C 0.113 3.887 7 N -0.697 5.697 8 C 0.548 3.452 9 O -0.528 6.528 10 C -0.135 4.135 11 C 0.146 3.854 12 N -0.461 5.461 13 C 0.123 3.877 14 C -0.138 4.138 15 C -0.089 4.089 16 C 0.518 3.482 17 F -0.184 7.184 18 F -0.160 7.160 19 F -0.159 7.159 20 N -0.722 5.722 21 C -0.240 4.240 22 H 0.074 0.926 23 C -0.008 4.008 24 N -0.928 5.928 25 Si 0.902 3.098 26 H -0.289 1.289 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.031 0.969 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.410 0.590 39 H 0.177 0.823 40 H 0.173 0.827 41 H 0.156 0.844 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.636 -10.896 6.994 16.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.196 4.196 4 C 0.058 3.942 5 H 0.073 0.927 6 C -0.011 4.011 7 N -0.348 5.348 8 C 0.332 3.668 9 O -0.406 6.406 10 C -0.141 4.141 11 C -0.012 4.012 12 N -0.168 5.168 13 C -0.035 4.035 14 C -0.158 4.158 15 C -0.100 4.100 16 C 0.464 3.536 17 F -0.166 7.166 18 F -0.141 7.141 19 F -0.140 7.140 20 N -0.364 5.364 21 C -0.371 4.371 22 H 0.091 0.909 23 C -0.205 4.205 24 N -0.576 5.576 25 Si 0.733 3.267 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.207 1.207 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.248 0.752 39 H 0.194 0.806 40 H 0.190 0.810 41 H 0.174 0.826 42 H 0.219 0.781 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.557 -10.676 7.047 15.968 hybrid contribution 0.430 0.252 -0.270 0.566 sum -9.127 -10.424 6.778 15.424 Atomic orbital electron populations 1.21947 0.96821 1.00989 1.00991 1.21722 0.93557 0.97827 0.99953 1.21819 1.04230 0.94565 0.99033 1.20567 0.86463 0.90891 0.96236 0.92700 1.21851 0.97523 0.93256 0.88433 1.45844 1.47913 1.10053 1.31025 1.17875 0.81984 0.82602 0.84307 1.90849 1.35794 1.67433 1.46527 1.20980 1.00580 0.93752 0.98750 1.23302 0.89418 1.00652 0.87871 1.67782 1.21538 1.09324 1.18201 1.23113 0.92766 0.89831 0.97755 1.22068 0.97431 1.02418 0.93916 1.20574 0.98363 0.94264 0.96758 1.17767 0.80004 0.76112 0.79725 1.93153 1.96073 1.37829 1.89513 1.93249 1.42753 1.81729 1.96377 1.93266 1.86284 1.96109 1.38306 1.42484 0.98683 1.21327 1.73894 1.19185 0.88758 0.96478 1.32674 0.90853 1.24724 0.96470 0.97672 1.01614 1.69650 1.06992 1.29858 1.51059 0.86281 0.79617 0.82313 0.78508 1.21678 1.21874 1.20728 0.93163 0.93528 0.93022 0.91832 0.89466 0.94970 0.94050 0.91371 0.91060 0.75225 0.80577 0.80997 0.82626 0.78088 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.84 37.15 0.33 -1.68 16 2 C -0.11 -1.77 2.69 -90.62 -0.24 -2.01 16 3 C -0.14 -2.41 8.26 37.16 0.31 -2.10 16 4 C 0.17 2.91 2.18 -67.93 -0.15 2.77 16 5 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 6 C 0.11 1.80 4.73 -4.05 -0.02 1.78 16 7 N -0.70 -10.84 5.34 -61.26 -0.33 -11.17 16 8 C 0.55 8.81 7.63 -12.34 -0.09 8.71 16 9 O -0.53 -9.68 11.56 5.32 0.06 -9.62 16 10 C -0.14 -1.88 5.87 -104.82 -0.62 -2.50 16 11 C 0.15 1.88 10.71 -17.13 -0.18 1.70 16 12 N -0.46 -5.65 10.35 -12.91 -0.13 -5.78 16 13 C 0.12 1.14 11.17 -17.47 -0.20 0.94 16 14 C -0.14 -1.31 9.49 -39.49 -0.37 -1.69 16 15 C -0.09 -1.14 5.43 -103.91 -0.56 -1.70 16 16 C 0.52 7.24 2.78 36.00 0.10 7.34 16 17 F -0.18 -2.19 16.08 2.25 0.04 -2.16 16 18 F -0.16 -2.48 15.10 2.25 0.03 -2.44 16 19 F -0.16 -2.57 15.18 2.25 0.03 -2.53 16 20 N -0.72 -15.49 4.44 -53.43 -0.24 -15.73 16 21 C -0.24 -5.79 7.57 -15.06 -0.11 -5.90 16 22 H 0.07 1.74 7.39 -52.49 -0.39 1.35 16 23 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 24 N -0.93 -25.83 13.06 55.49 0.72 -25.10 16 25 Si 0.90 20.87 29.55 -169.99 -5.02 15.85 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.05 0.66 6.55 -51.93 -0.34 0.32 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.09 1.80 6.01 -51.93 -0.31 1.49 16 34 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.06 6.71 -51.93 -0.35 0.72 16 38 H 0.41 6.26 6.21 -40.82 -0.25 6.01 16 39 H 0.18 2.17 6.42 -52.49 -0.34 1.84 16 40 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.16 1.03 7.26 -52.49 -0.38 0.65 16 42 H 0.39 9.13 7.80 -40.82 -0.32 8.82 16 43 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 362.48 15.07 5.46 5.46 Total: -1.00 -29.20 362.48 -6.47 -35.67 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.19 Total: 12.22 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -1.91 Total: 5.34 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: 0.03 Total: -57.78 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.06 Total: -9.62 kcal Atomic # 9 Polarization: -7.24 SS G_CDS: 0.10 Total: -7.13 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.20 -6.47 -35.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482556164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.249 kcal (2) G-P(sol) polarization free energy of solvation -29.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds