Wall clock time and date at job start Wed Apr 1 2020 03:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53009 * 109.47222 * 2 1 4 4 C 1.52997 * 109.47198 * 120.00063 * 2 1 3 5 5 H 1.09005 * 109.47107 * 299.99574 * 4 2 1 6 6 C 1.52997 * 109.47380 * 59.99885 * 4 2 1 7 7 N 1.46496 * 109.47707 * 175.00249 * 6 4 2 8 8 C 1.34767 * 120.00520 * 180.02562 * 7 6 4 9 9 O 1.21554 * 120.00157 * 359.97438 * 8 7 6 10 10 C 1.47840 * 120.00407 * 179.97438 * 8 7 6 11 11 C 1.39560 * 120.55741 * 359.97438 * 10 8 7 12 12 N 1.31668 * 120.56413 * 179.69864 * 11 10 8 13 13 C 1.31960 * 121.87959 * 0.27992 * 12 11 10 14 14 C 1.38305 * 121.08339 * 0.02562 * 13 12 11 15 15 C 1.38406 * 119.30286 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.85463 * 180.02562 * 15 14 13 17 17 F 1.39903 * 109.47158 * 359.97438 * 16 15 14 18 18 F 1.39900 * 109.47137 * 120.00195 * 16 15 14 19 19 F 1.39901 * 109.47087 * 239.99921 * 16 15 14 20 20 N 1.46500 * 109.47271 * 180.02562 * 4 2 1 21 21 C 1.36937 * 120.00365 * 85.00101 * 20 4 2 22 22 H 1.07998 * 119.99528 * 359.97438 * 21 20 4 23 23 C 1.38807 * 120.00225 * 179.97438 * 21 20 4 24 24 N 1.31614 * 120.00249 * 0.02562 * 23 21 20 25 25 Si 1.86804 * 120.00003 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47174 * 89.99982 * 25 23 21 27 27 H 1.48501 * 109.47132 * 210.00208 * 25 23 21 28 28 H 1.48505 * 109.47141 * 329.99974 * 25 23 21 29 29 H 1.09000 * 109.47161 * 300.00368 * 1 2 3 30 30 H 1.09007 * 109.46957 * 60.00292 * 1 2 3 31 31 H 1.08997 * 109.47611 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47603 * 240.00166 * 2 1 3 33 33 H 1.08998 * 109.47160 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47182 * 299.99683 * 3 2 1 35 35 H 1.08998 * 109.46851 * 59.99844 * 3 2 1 36 36 H 1.09004 * 109.47056 * 55.00049 * 6 4 2 37 37 H 1.09000 * 109.46835 * 295.00853 * 6 4 2 38 38 H 0.97010 * 119.99513 * 359.97438 * 7 6 4 39 39 H 1.08002 * 119.72087 * 359.97438 * 11 10 8 40 40 H 1.08001 * 119.45875 * 179.97438 * 13 12 11 41 41 H 1.07995 * 120.35157 * 179.97438 * 14 13 12 42 42 H 0.97000 * 119.99946 * 264.99734 * 20 4 2 43 43 H 0.96996 * 120.00381 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6766 -0.2074 2.1392 6 6 1.5300 -2.1637 1.2493 7 7 2.1140 -2.8882 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0430 -4.7528 1.8253 10 6 2.3958 -4.9160 3.7236 11 6 3.2734 -4.2754 4.5994 12 7 3.7943 -4.9249 5.6195 13 6 3.5175 -6.1940 5.8522 14 6 2.6620 -6.9013 5.0272 15 6 2.0880 -6.2642 3.9408 16 6 1.1504 -7.0011 3.0194 17 9 1.0077 -8.3219 3.4582 18 9 -0.0984 -6.3705 3.0230 19 9 1.6720 -6.9953 1.7213 20 7 3.5049 -0.7207 1.2495 21 6 4.1892 0.3542 1.7510 22 1 3.6488 1.2018 2.1460 23 6 5.5773 0.3544 1.7518 24 7 6.2358 -0.6782 1.2701 25 14 6.5107 1.8211 2.4353 26 1 6.7574 1.6187 3.8856 27 1 7.8086 1.9560 1.7265 28 1 5.7080 3.0548 2.2372 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.8183 -2.6511 0.3179 37 1 0.4436 -2.1650 1.3387 38 1 2.7232 -2.4350 2.9844 39 1 3.5241 -3.2368 4.4418 40 1 3.9672 -6.6888 6.7004 41 1 2.4441 -7.9397 5.2285 42 1 3.9903 -1.4818 0.8945 43 1 7.2058 -0.6779 1.2703 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482556164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:56 Heat of formation + Delta-G solvation = -158.370784 kcal Electronic energy + Delta-G solvation = -31328.661656 eV Core-core repulsion = 26572.569047 eV Total energy + Delta-G solvation = -4756.092609 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.14749 -48.69924 -48.54930 -41.89717 -40.30588 -38.73925 -35.54533 -34.91443 -34.49652 -32.96736 -32.06881 -29.65897 -27.91075 -27.42139 -26.05810 -25.27849 -23.88241 -23.16607 -21.88971 -20.82474 -20.03021 -19.54405 -19.45930 -19.20819 -18.41587 -17.76243 -16.98217 -16.61662 -16.53972 -16.41440 -16.09225 -15.71632 -15.41715 -15.38931 -15.18050 -15.07124 -14.99940 -14.92498 -14.82071 -14.72675 -14.58697 -14.17867 -13.76727 -13.55783 -13.42095 -13.28608 -12.89605 -12.84198 -12.69640 -12.44491 -12.28322 -12.00309 -11.78349 -11.50632 -11.47312 -11.37197 -11.27496 -10.83115 -10.71627 -10.53058 -10.07221 -8.94767 -7.85818 -5.12972 -0.78130 -0.32843 1.47629 1.51697 1.53870 1.59893 1.65709 1.99973 2.48154 2.58382 2.61479 2.91969 3.10687 3.34948 3.47210 3.51070 3.57206 3.72849 3.86503 3.92391 4.10243 4.29106 4.30593 4.32456 4.43174 4.46059 4.64191 4.68810 4.77755 4.93570 4.98584 5.06989 5.16375 5.24776 5.26759 5.30355 5.46580 5.62736 5.66958 5.78521 6.33998 6.37289 6.57755 6.99816 7.42655 8.13060 8.38336 9.36817 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011752 B = 0.003607 C = 0.002938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.102193 B = 7761.471986 C = 9529.156240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C -0.135 4.135 4 C 0.172 3.828 5 H 0.061 0.939 6 C 0.122 3.878 7 N -0.697 5.697 8 C 0.546 3.454 9 O -0.556 6.556 10 C -0.156 4.156 11 C 0.142 3.858 12 N -0.480 5.480 13 C 0.137 3.863 14 C -0.121 4.121 15 C -0.102 4.102 16 C 0.516 3.484 17 F -0.171 7.171 18 F -0.172 7.172 19 F -0.176 7.176 20 N -0.728 5.728 21 C -0.214 4.214 22 H 0.080 0.920 23 C -0.068 4.068 24 N -0.966 5.966 25 Si 0.955 3.045 26 H -0.289 1.289 27 H -0.307 1.307 28 H -0.272 1.272 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.053 0.947 37 H 0.087 0.913 38 H 0.411 0.589 39 H 0.173 0.827 40 H 0.219 0.781 41 H 0.191 0.809 42 H 0.372 0.628 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.751 -11.403 8.731 17.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.192 4.192 4 C 0.063 3.937 5 H 0.079 0.921 6 C -0.002 4.002 7 N -0.347 5.347 8 C 0.332 3.668 9 O -0.436 6.436 10 C -0.161 4.161 11 C -0.015 4.015 12 N -0.188 5.188 13 C -0.020 4.020 14 C -0.140 4.140 15 C -0.112 4.112 16 C 0.462 3.538 17 F -0.152 7.152 18 F -0.153 7.153 19 F -0.158 7.158 20 N -0.367 5.367 21 C -0.346 4.346 22 H 0.098 0.902 23 C -0.260 4.260 24 N -0.618 5.618 25 Si 0.786 3.214 26 H -0.217 1.217 27 H -0.234 1.234 28 H -0.197 1.197 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.249 0.751 39 H 0.190 0.810 40 H 0.235 0.765 41 H 0.208 0.792 42 H 0.204 0.796 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.725 -11.145 8.793 17.792 hybrid contribution 0.687 0.326 -0.765 1.079 sum -10.038 -10.819 8.028 16.801 Atomic orbital electron populations 1.21856 0.93990 1.01880 1.02174 1.21620 0.95861 0.96798 0.98458 1.21732 1.01699 0.95486 1.00279 1.20703 0.84010 0.92027 0.96977 0.92147 1.21721 0.98256 0.92095 0.88092 1.45821 1.47891 1.10213 1.30818 1.18223 0.81482 0.82467 0.84611 1.90824 1.37129 1.67904 1.47723 1.20780 1.02111 0.94448 0.98772 1.23216 0.89421 1.00714 0.88153 1.67842 1.22003 1.10940 1.17988 1.23907 0.91313 0.88651 0.98155 1.22498 0.95771 1.03761 0.91986 1.20666 0.98883 0.93926 0.97761 1.17929 0.79791 0.76731 0.79350 1.93170 1.96011 1.36816 1.89216 1.93216 1.43644 1.82094 1.96396 1.93224 1.86490 1.96249 1.39803 1.42587 1.00452 1.20198 1.73507 1.19455 0.88727 0.96576 1.29827 0.90189 1.25305 0.97563 0.99694 1.03478 1.69793 1.06338 1.31736 1.53888 0.85409 0.77964 0.80442 0.77568 1.21661 1.23418 1.19704 0.92131 0.92207 0.92320 0.93167 0.93167 0.93176 0.93389 0.92862 0.89524 0.75114 0.81019 0.76465 0.79166 0.79568 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.46 8.84 71.98 0.64 -2.82 16 2 C -0.11 -3.33 2.69 -10.79 -0.03 -3.36 16 3 C -0.13 -4.50 8.26 71.99 0.59 -3.90 16 4 C 0.17 5.84 2.18 44.99 0.10 5.94 16 5 H 0.06 2.03 8.08 -2.38 -0.02 2.01 16 6 C 0.12 3.89 4.73 86.38 0.41 4.30 16 7 N -0.70 -22.02 5.34 -466.00 -2.49 -24.50 16 8 C 0.55 17.87 7.63 86.79 0.66 18.53 16 9 O -0.56 -20.79 11.56 -3.89 -0.04 -20.83 16 10 C -0.16 -4.32 5.87 -19.99 -0.12 -4.44 16 11 C 0.14 3.62 10.71 85.04 0.91 4.54 16 12 N -0.48 -10.86 10.35 -194.75 -2.01 -12.87 16 13 C 0.14 2.05 11.17 84.69 0.95 3.00 16 14 C -0.12 -1.90 9.49 22.33 0.21 -1.69 16 15 C -0.10 -2.49 5.43 -19.40 -0.11 -2.59 16 16 C 0.52 14.10 2.78 71.24 0.20 14.29 16 17 F -0.17 -3.77 16.08 44.97 0.72 -3.04 16 18 F -0.17 -5.32 15.10 44.97 0.68 -4.64 16 19 F -0.18 -5.77 15.18 44.97 0.68 -5.09 16 20 N -0.73 -31.59 4.44 -322.95 -1.43 -33.03 16 21 C -0.21 -10.35 7.57 84.03 0.64 -9.71 16 22 H 0.08 3.73 7.39 -2.91 -0.02 3.70 16 23 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 24 N -0.97 -55.34 13.06 21.65 0.28 -55.06 16 25 Si 0.96 43.46 29.55 68.60 2.03 45.49 16 26 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 27 H -0.31 -14.58 7.11 99.48 0.71 -13.87 16 28 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.06 1.37 6.55 -2.39 -0.02 1.35 16 32 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.05 2.05 6.01 -2.39 -0.01 2.04 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.09 2.50 6.71 -2.39 -0.02 2.49 16 38 H 0.41 12.83 6.21 -92.70 -0.58 12.26 16 39 H 0.17 4.35 6.42 -2.91 -0.02 4.33 16 40 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 41 H 0.19 1.64 7.26 -2.91 -0.02 1.62 16 42 H 0.37 18.19 7.80 -92.71 -0.72 17.47 16 43 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -64.68 362.48 3.71 -60.97 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.21 Total: 33.65 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 5.52 Total: 18.97 kcal Atomic # 7 Polarization: -119.81 SS G_CDS: -5.66 Total: -125.47 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.04 Total: -20.83 kcal Atomic # 9 Polarization: -14.86 SS G_CDS: 2.08 Total: -12.78 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -64.68 3.71 -60.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482556164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.405 kcal (2) G-P(sol) polarization free energy of solvation -64.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds