Wall clock time and date at job start Wed Apr 1 2020 03:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46886 * 150.75202 * 3 2 1 5 5 C 1.34771 * 119.99702 * 83.02557 * 4 3 2 6 6 O 1.21612 * 119.99919 * 183.74927 * 5 4 3 7 7 C 1.47293 * 120.00548 * 3.74809 * 5 4 3 8 8 C 1.36564 * 125.80662 * 173.51151 * 7 5 4 9 9 C 1.40069 * 106.92532 * 180.02562 * 8 7 5 10 10 C 1.36569 * 106.92462 * 0.02562 * 9 8 7 11 11 C 1.47291 * 125.80872 * 179.97438 * 10 9 8 12 12 N 1.34771 * 120.00301 * 180.02562 * 11 10 9 13 13 O 1.21616 * 119.99690 * 359.97438 * 11 10 9 14 14 O 1.34549 * 125.80163 * 353.80043 * 7 5 4 15 15 C 1.46495 * 119.99918 * 263.02985 * 4 3 2 16 16 C 1.53047 * 109.45666 * 240.06730 * 15 4 3 17 17 C 1.53194 * 109.31147 * 178.61521 * 16 15 4 18 18 N 1.46923 * 108.77571 * 54.63403 * 17 16 15 19 19 C 1.36940 * 120.62769 * 126.41152 * 18 17 16 20 20 H 1.07991 * 120.00559 * 323.88886 * 19 18 17 21 21 C 1.38815 * 119.99506 * 143.89185 * 19 18 17 22 22 N 1.31611 * 120.00465 * 1.85469 * 21 19 18 23 23 Si 1.86808 * 119.99721 * 181.85568 * 21 19 18 24 24 H 1.48497 * 109.47117 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46838 * 119.99787 * 23 21 19 26 26 H 1.48497 * 109.46988 * 239.99668 * 23 21 19 27 27 C 1.46924 * 118.74224 * 306.39345 * 18 17 16 28 28 C 1.53040 * 109.46268 * 119.99940 * 15 4 3 29 29 H 4.40644 * 5.51348 * 180.02562 * 4 1 2 30 30 H 1.08991 * 109.47188 * 30.75632 * 3 2 1 31 31 H 1.08997 * 109.47054 * 270.75178 * 3 2 1 32 32 H 1.07993 * 126.54073 * 359.97438 * 8 7 5 33 33 H 1.07994 * 126.54204 * 180.02562 * 9 8 7 34 34 H 0.96996 * 120.00344 * 359.97438 * 12 11 10 35 35 H 0.97005 * 120.00189 * 179.72447 * 12 11 10 36 36 H 1.08999 * 109.46127 * 0.02562 * 15 4 3 37 37 H 1.09004 * 109.49850 * 298.56412 * 16 15 4 38 38 H 1.09000 * 109.49581 * 58.66130 * 16 15 4 39 39 H 1.09000 * 109.58794 * 294.84464 * 17 16 15 40 40 H 1.09001 * 109.70356 * 174.48880 * 17 16 15 41 41 H 0.97008 * 120.00381 * 180.02562 * 22 21 19 42 42 H 1.09003 * 109.58409 * 293.82146 * 27 18 17 43 43 H 1.08991 * 109.70809 * 173.46653 * 27 18 17 44 44 H 1.08999 * 109.49667 * 301.33874 * 28 15 4 45 45 H 1.09004 * 109.49377 * 61.40126 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2061 -0.6749 5 6 3.2242 2.3677 0.0025 6 8 3.5638 3.3830 -0.5742 7 6 2.9117 2.4075 1.4413 8 6 3.0819 3.4823 2.2665 9 6 2.6622 3.0870 3.5430 10 6 2.2542 1.7876 3.4426 11 6 1.7317 0.9609 4.5440 12 7 1.3618 -0.3143 4.3127 13 8 1.6349 1.4287 5.6624 14 8 2.4149 1.3895 2.1674 15 6 3.5231 1.1487 -2.0860 16 6 4.9954 1.5428 -2.2251 17 6 5.4082 1.4483 -3.6973 18 7 4.4868 2.2639 -4.5001 19 6 4.9656 3.2248 -5.3502 20 1 5.8365 3.8019 -5.0773 21 6 4.3312 3.4569 -6.5629 22 7 3.2484 2.7791 -6.8796 23 14 5.0145 4.7315 -7.7455 24 1 6.2296 5.3507 -7.1579 25 1 5.3646 4.0762 -9.0312 26 1 3.9920 5.7810 -7.9870 27 6 3.0420 2.0287 -4.3738 28 6 2.6556 2.1166 -2.8940 29 1 -1.0502 -0.0003 0.0004 30 1 3.0097 -0.8822 -0.5255 31 1 3.0093 -0.0127 1.0275 32 1 3.4675 4.4519 1.9881 33 1 2.6614 3.6939 4.4362 34 1 1.4394 -0.6876 3.4208 35 1 1.0215 -0.8600 5.0389 36 1 3.3817 0.1350 -2.4608 37 1 5.1331 2.5654 -1.8735 38 1 5.6105 0.8673 -1.6306 39 1 5.3575 0.4100 -4.0251 40 1 6.4256 1.8204 -3.8183 41 1 2.8053 2.9411 -7.7272 42 1 2.7983 1.0377 -4.7568 43 1 2.4959 2.7835 -4.9395 44 1 1.6055 1.8495 -2.7756 45 1 2.8150 3.1336 -2.5358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483983841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:30 Heat of formation + Delta-G solvation = 38.290948 kcal Electronic energy + Delta-G solvation = -30661.070401 eV Core-core repulsion = 26455.362425 eV Total energy + Delta-G solvation = -4205.707976 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.15200 -40.17520 -39.53641 -37.14537 -35.97996 -34.34063 -33.34401 -33.30470 -32.18565 -30.74742 -29.96621 -29.45702 -27.17034 -25.72090 -24.31076 -22.86270 -22.12024 -21.80559 -21.04683 -20.32016 -19.41191 -18.82497 -18.38419 -17.40323 -17.23326 -16.88304 -16.71675 -15.83755 -15.34803 -15.11901 -14.79715 -14.68815 -14.39893 -14.01976 -13.84537 -13.79621 -13.47330 -13.38198 -13.26108 -13.02286 -12.90108 -12.62511 -12.30018 -11.55470 -11.30643 -10.96111 -10.90085 -10.78313 -10.70540 -10.53693 -10.41953 -10.29212 -10.27187 -10.13933 -10.04492 -9.86404 -9.70312 -9.47127 -9.09547 -8.65868 -8.39069 -6.51623 -5.76176 -3.28781 0.35485 1.64405 2.03608 2.31698 2.67710 2.73792 2.95067 3.02927 3.30536 3.39275 3.46461 3.48921 4.13546 4.24540 4.50495 4.51085 4.56739 4.92247 5.07979 5.18677 5.28494 5.41648 5.43633 5.51733 5.57922 5.60373 5.75505 5.79354 5.89754 6.00021 6.12783 6.22563 6.29987 6.36153 6.49850 6.58762 6.73979 6.78957 6.83053 6.94447 7.01456 7.26028 7.44914 7.50696 7.61702 7.79997 7.83702 8.00991 8.56196 9.27620 9.86241 10.46091 11.31090 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022332 B = 0.002646 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.504699 B =10578.570707 C =11116.412129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.205 4.205 3 C 0.212 3.788 4 N -0.595 5.595 5 C 0.596 3.404 6 O -0.484 6.484 7 C -0.026 4.026 8 C -0.141 4.141 9 C -0.123 4.123 10 C -0.069 4.069 11 C 0.612 3.388 12 N -0.841 5.841 13 O -0.520 6.520 14 O -0.146 6.146 15 C 0.159 3.841 16 C -0.148 4.148 17 C 0.151 3.849 18 N -0.591 5.591 19 C -0.250 4.250 20 H 0.063 0.937 21 C 0.008 3.992 22 N -0.906 5.906 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.175 3.825 28 C -0.156 4.156 29 H 0.216 0.784 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.170 0.830 33 H 0.167 0.833 34 H 0.408 0.592 35 H 0.410 0.590 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.017 0.983 40 H 0.057 0.943 41 H 0.253 0.747 42 H 0.014 0.986 43 H 0.097 0.903 44 H 0.044 0.956 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.238 -9.281 20.710 23.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.206 4.206 3 C 0.090 3.910 4 N -0.327 5.327 5 C 0.381 3.619 6 O -0.359 6.359 7 C -0.080 4.080 8 C -0.161 4.161 9 C -0.143 4.143 10 C -0.122 4.122 11 C 0.396 3.604 12 N -0.405 5.405 13 O -0.397 6.397 14 O -0.043 6.043 15 C 0.058 3.942 16 C -0.188 4.188 17 C 0.024 3.976 18 N -0.314 5.314 19 C -0.380 4.380 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.550 5.550 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.049 3.951 28 C -0.196 4.196 29 H 0.233 0.767 30 H 0.127 0.873 31 H 0.123 0.877 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.237 0.763 35 H 0.242 0.758 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.115 0.885 44 H 0.063 0.937 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.170 -8.564 20.729 22.813 hybrid contribution -0.197 0.199 -0.678 0.733 sum -4.367 -8.365 20.051 22.161 Atomic orbital electron populations 1.24924 0.95879 0.98805 1.00415 1.23435 0.94767 1.01654 1.00761 1.18645 0.84146 0.89016 0.99235 1.48319 1.63393 1.08178 1.12788 1.16813 0.78539 0.84206 0.82310 1.90925 1.46079 1.32806 1.66076 1.22811 1.04392 0.87504 0.93304 1.22004 1.02339 1.00223 0.91535 1.21977 0.99297 0.93908 0.99152 1.22296 1.09947 0.96304 0.83693 1.16620 0.76841 0.81424 0.85504 1.43687 1.67691 1.13136 1.15948 1.90923 1.54870 1.72374 1.21522 1.84290 1.63944 1.37621 1.18417 1.21347 0.95918 1.00519 0.76398 1.22489 0.93654 1.02587 1.00083 1.20852 0.94374 0.94132 0.88230 1.43978 1.00471 1.39460 1.47470 1.19193 1.12315 1.11163 0.95296 0.91891 1.25319 0.98012 0.98870 0.96845 1.69909 1.19455 1.42853 1.22815 0.86200 0.78666 0.80685 0.81156 1.20185 1.21560 1.21666 1.20846 0.85283 1.00028 0.88950 1.22715 0.96627 1.00369 0.99922 0.76701 0.87305 0.87720 0.81255 0.81519 0.76276 0.75772 0.89891 0.90197 0.93238 0.96534 0.92435 0.93635 0.96763 0.88476 0.93726 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 19.25 29.55 0.57 -1.23 16 2 C -0.20 -2.21 12.61 -37.12 -0.47 -2.68 16 3 C 0.21 2.14 5.53 -6.82 -0.04 2.10 16 4 N -0.60 -8.28 2.41 -170.69 -0.41 -8.70 16 5 C 0.60 9.12 7.00 -12.58 -0.09 9.03 16 6 O -0.48 -9.17 13.12 5.27 0.07 -9.10 16 7 C -0.03 -0.33 6.74 -36.51 -0.25 -0.57 16 8 C -0.14 -1.61 10.60 -39.50 -0.42 -2.03 16 9 C -0.12 -1.26 10.60 -39.50 -0.42 -1.68 16 10 C -0.07 -0.70 7.14 -36.51 -0.26 -0.96 16 11 C 0.61 5.83 8.08 -12.58 -0.10 5.73 16 12 N -0.84 -4.68 8.87 30.40 0.27 -4.41 16 13 O -0.52 -6.57 17.70 5.26 0.09 -6.48 16 14 O -0.15 -1.52 6.31 4.35 0.03 -1.49 16 15 C 0.16 2.63 2.51 -67.89 -0.17 2.46 16 16 C -0.15 -2.61 5.27 -26.61 -0.14 -2.75 16 17 C 0.15 3.14 6.52 -3.71 -0.02 3.12 16 18 N -0.59 -14.91 2.99 -172.33 -0.52 -15.43 16 19 C -0.25 -6.93 9.55 -15.06 -0.14 -7.08 16 20 H 0.06 1.74 7.83 -52.49 -0.41 1.33 16 21 C 0.01 0.22 5.28 -17.43 -0.09 0.13 16 22 N -0.91 -26.20 10.76 55.49 0.60 -25.61 16 23 Si 0.90 21.89 29.55 -169.99 -5.02 16.86 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.18 4.22 5.23 -3.71 -0.02 4.20 16 28 C -0.16 -3.15 5.26 -26.61 -0.14 -3.29 16 29 H 0.22 1.48 7.80 -54.08 -0.42 1.06 16 30 H 0.11 0.88 7.78 -51.93 -0.40 0.48 16 31 H 0.11 0.88 5.44 -51.93 -0.28 0.60 16 32 H 0.17 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.41 1.65 8.59 -40.82 -0.35 1.30 16 35 H 0.41 1.52 8.93 -40.82 -0.36 1.16 16 36 H 0.08 1.28 7.70 -51.93 -0.40 0.88 16 37 H 0.08 1.61 6.34 -51.93 -0.33 1.28 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 41 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.10 2.67 6.06 -51.93 -0.31 2.36 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 1.81 6.08 -51.93 -0.32 1.49 16 LS Contribution 377.67 15.07 5.69 5.69 Total: -1.00 -34.10 377.67 -7.08 -41.18 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -5.68 Total: 2.97 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -2.20 Total: 4.50 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.06 Total: -54.14 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: 0.19 Total: -17.06 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.10 -7.08 -41.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483983841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.467 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds