Wall clock time and date at job start Wed Apr 1 2020 03:51:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17395 * 1
3 3 C 1.47205 * 179.97438 * 2 1
4 4 N 1.46504 * 109.46886 * 150.75202 * 3 2 1
5 5 C 1.34771 * 119.99702 * 83.02557 * 4 3 2
6 6 O 1.21612 * 119.99919 * 183.74927 * 5 4 3
7 7 C 1.47293 * 120.00548 * 3.74809 * 5 4 3
8 8 C 1.36564 * 125.80662 * 173.51151 * 7 5 4
9 9 C 1.40069 * 106.92532 * 180.02562 * 8 7 5
10 10 C 1.36569 * 106.92462 * 0.02562 * 9 8 7
11 11 C 1.47291 * 125.80872 * 179.97438 * 10 9 8
12 12 N 1.34771 * 120.00301 * 180.02562 * 11 10 9
13 13 O 1.21616 * 119.99690 * 359.97438 * 11 10 9
14 14 O 1.34549 * 125.80163 * 353.80043 * 7 5 4
15 15 C 1.46495 * 119.99918 * 263.02985 * 4 3 2
16 16 C 1.53047 * 109.45666 * 240.06730 * 15 4 3
17 17 C 1.53194 * 109.31147 * 178.61521 * 16 15 4
18 18 N 1.46923 * 108.77571 * 54.63403 * 17 16 15
19 19 C 1.36940 * 120.62769 * 126.41152 * 18 17 16
20 20 H 1.07991 * 120.00559 * 323.88886 * 19 18 17
21 21 C 1.38815 * 119.99506 * 143.89185 * 19 18 17
22 22 N 1.31611 * 120.00465 * 1.85469 * 21 19 18
23 23 Si 1.86808 * 119.99721 * 181.85568 * 21 19 18
24 24 H 1.48497 * 109.47117 * 359.97438 * 23 21 19
25 25 H 1.48498 * 109.46838 * 119.99787 * 23 21 19
26 26 H 1.48497 * 109.46988 * 239.99668 * 23 21 19
27 27 C 1.46924 * 118.74224 * 306.39345 * 18 17 16
28 28 C 1.53040 * 109.46268 * 119.99940 * 15 4 3
29 29 H 4.40644 * 5.51348 * 180.02562 * 4 1 2
30 30 H 1.08991 * 109.47188 * 30.75632 * 3 2 1
31 31 H 1.08997 * 109.47054 * 270.75178 * 3 2 1
32 32 H 1.07993 * 126.54073 * 359.97438 * 8 7 5
33 33 H 1.07994 * 126.54204 * 180.02562 * 9 8 7
34 34 H 0.96996 * 120.00344 * 359.97438 * 12 11 10
35 35 H 0.97005 * 120.00189 * 179.72447 * 12 11 10
36 36 H 1.08999 * 109.46127 * 0.02562 * 15 4 3
37 37 H 1.09004 * 109.49850 * 298.56412 * 16 15 4
38 38 H 1.09000 * 109.49581 * 58.66130 * 16 15 4
39 39 H 1.09000 * 109.58794 * 294.84464 * 17 16 15
40 40 H 1.09001 * 109.70356 * 174.48880 * 17 16 15
41 41 H 0.97008 * 120.00381 * 180.02562 * 22 21 19
42 42 H 1.09003 * 109.58409 * 293.82146 * 27 18 17
43 43 H 1.08991 * 109.70809 * 173.46653 * 27 18 17
44 44 H 1.08999 * 109.49667 * 301.33874 * 28 15 4
45 45 H 1.09004 * 109.49377 * 61.40126 * 28 15 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1338 1.2061 -0.6749
5 6 3.2242 2.3677 0.0025
6 8 3.5638 3.3830 -0.5742
7 6 2.9117 2.4075 1.4413
8 6 3.0819 3.4823 2.2665
9 6 2.6622 3.0870 3.5430
10 6 2.2542 1.7876 3.4426
11 6 1.7317 0.9609 4.5440
12 7 1.3618 -0.3143 4.3127
13 8 1.6349 1.4287 5.6624
14 8 2.4149 1.3895 2.1674
15 6 3.5231 1.1487 -2.0860
16 6 4.9954 1.5428 -2.2251
17 6 5.4082 1.4483 -3.6973
18 7 4.4868 2.2639 -4.5001
19 6 4.9656 3.2248 -5.3502
20 1 5.8365 3.8019 -5.0773
21 6 4.3312 3.4569 -6.5629
22 7 3.2484 2.7791 -6.8796
23 14 5.0145 4.7315 -7.7455
24 1 6.2296 5.3507 -7.1579
25 1 5.3646 4.0762 -9.0312
26 1 3.9920 5.7810 -7.9870
27 6 3.0420 2.0287 -4.3738
28 6 2.6556 2.1166 -2.8940
29 1 -1.0502 -0.0003 0.0004
30 1 3.0097 -0.8822 -0.5255
31 1 3.0093 -0.0127 1.0275
32 1 3.4675 4.4519 1.9881
33 1 2.6614 3.6939 4.4362
34 1 1.4394 -0.6876 3.4208
35 1 1.0215 -0.8600 5.0389
36 1 3.3817 0.1350 -2.4608
37 1 5.1331 2.5654 -1.8735
38 1 5.6105 0.8673 -1.6306
39 1 5.3575 0.4100 -4.0251
40 1 6.4256 1.8204 -3.8183
41 1 2.8053 2.9411 -7.7272
42 1 2.7983 1.0377 -4.7568
43 1 2.4959 2.7835 -4.9395
44 1 1.6055 1.8495 -2.7756
45 1 2.8150 3.1336 -2.5358
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001483983841.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:51:29
Heat of formation + Delta-G solvation = 14.594031 kcal
Electronic energy + Delta-G solvation = -30662.097976 eV
Core-core repulsion = 26455.362425 eV
Total energy + Delta-G solvation = -4206.735551 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 345.152 amu
Computer time = 1.54 seconds
Orbital eigenvalues (eV)
-44.01801 -41.36800 -40.33858 -38.70858 -37.21424 -35.02791 -34.83716 -34.16266
-33.45619 -32.15797 -31.50886 -30.86821 -28.15344 -27.25509 -25.60563 -24.11644
-23.81140 -22.91400 -21.93662 -21.57763 -20.68695 -19.80365 -19.15784 -18.82423
-18.12300 -17.97467 -17.66435 -17.26994 -16.76117 -16.30448 -15.95255 -15.54487
-15.53043 -15.39497 -15.34149 -14.85164 -14.78771 -14.67554 -14.33320 -14.28999
-14.18418 -14.01173 -13.67363 -13.22372 -12.95148 -12.80026 -12.63193 -12.27848
-11.99187 -11.86080 -11.79410 -11.59283 -11.51249 -11.43885 -11.30067 -10.98256
-10.93807 -10.90741 -10.53961 -10.07978 -9.80046 -8.53686 -7.86671 -5.42353
-0.53915 0.74999 1.09423 1.41199 1.45631 1.46375 1.57144 1.89581
1.96402 1.97109 2.19507 2.47425 2.49924 3.24820 3.31257 3.50916
3.67756 3.71945 3.80317 3.95620 4.07582 4.15085 4.26553 4.34921
4.37046 4.54110 4.63084 4.71332 4.72294 4.78675 4.85628 4.97889
5.05803 5.07589 5.10071 5.17850 5.34191 5.45380 5.53125 5.58638
5.65933 5.71127 5.79584 6.16184 6.21494 6.46738 6.70036 6.86164
7.02697 7.18893 7.86698 8.40062 9.18047
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.022332 B = 0.002646 C = 0.002518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1253.504699 B =10578.570707 C =11116.412129
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.178 4.178
2 C -0.232 4.232
3 C 0.208 3.792
4 N -0.591 5.591
5 C 0.594 3.406
6 O -0.532 6.532
7 C -0.044 4.044
8 C -0.136 4.136
9 C -0.128 4.128
10 C -0.060 4.060
11 C 0.613 3.387
12 N -0.816 5.816
13 O -0.553 6.553
14 O -0.134 6.134
15 C 0.168 3.832
16 C -0.135 4.135
17 C 0.148 3.852
18 N -0.612 5.612
19 C -0.263 4.263
20 H 0.058 0.942
21 C -0.044 4.044
22 N -0.932 5.932
23 Si 0.967 3.033
24 H -0.269 1.269
25 H -0.286 1.286
26 H -0.292 1.292
27 C 0.185 3.815
28 C -0.140 4.140
29 H 0.239 0.761
30 H 0.135 0.865
31 H 0.124 0.876
32 H 0.172 0.828
33 H 0.182 0.818
34 H 0.419 0.581
35 H 0.423 0.577
36 H 0.106 0.894
37 H 0.052 0.948
38 H 0.086 0.914
39 H 0.030 0.970
40 H 0.054 0.946
41 H 0.250 0.750
42 H 0.005 0.995
43 H 0.056 0.944
44 H 0.052 0.948
45 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.312 -11.116 22.594 25.547
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.233 4.233
3 C 0.088 3.912
4 N -0.321 5.321
5 C 0.382 3.618
6 O -0.410 6.410
7 C -0.098 4.098
8 C -0.156 4.156
9 C -0.148 4.148
10 C -0.114 4.114
11 C 0.397 3.603
12 N -0.381 5.381
13 O -0.433 6.433
14 O -0.030 6.030
15 C 0.067 3.933
16 C -0.174 4.174
17 C 0.022 3.978
18 N -0.336 5.336
19 C -0.394 4.394
20 H 0.076 0.924
21 C -0.239 4.239
22 N -0.578 5.578
23 Si 0.795 3.205
24 H -0.193 1.193
25 H -0.212 1.212
26 H -0.219 1.219
27 C 0.058 3.942
28 C -0.180 4.180
29 H 0.255 0.745
30 H 0.153 0.847
31 H 0.142 0.858
32 H 0.189 0.811
33 H 0.199 0.801
34 H 0.250 0.750
35 H 0.257 0.743
36 H 0.123 0.877
37 H 0.071 0.929
38 H 0.105 0.895
39 H 0.048 0.952
40 H 0.072 0.928
41 H 0.060 0.940
42 H 0.023 0.977
43 H 0.074 0.926
44 H 0.070 0.930
45 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -4.249 -10.481 22.639 25.307
hybrid contribution -0.240 0.713 -1.169 1.390
sum -4.488 -9.768 21.471 24.012
Atomic orbital electron populations
1.25636 0.96761 0.97670 0.99488 1.23675 0.95306 1.02657 1.01690
1.18980 0.84056 0.87962 1.00238 1.48193 1.62999 1.09259 1.11607
1.17090 0.77670 0.83833 0.83249 1.90909 1.48264 1.34434 1.67385
1.22270 1.06638 0.88539 0.92349 1.22165 1.01404 1.00121 0.91932
1.22172 0.99240 0.94294 0.99139 1.22553 1.08751 0.96484 0.83606
1.16543 0.76884 0.82269 0.84619 1.43535 1.65724 1.11759 1.17034
1.90920 1.56576 1.73240 1.22564 1.84261 1.63684 1.36736 1.18294
1.21046 0.94326 1.00234 0.77735 1.22284 0.95065 1.02017 0.98060
1.21003 0.93438 0.93901 0.89462 1.44223 1.01424 1.39932 1.47974
1.19441 1.12059 1.11951 0.95937 0.92432 1.26028 0.98387 1.01145
0.98389 1.70080 1.20396 1.44397 1.22935 0.85213 0.78052 0.78300
0.78962 1.19310 1.21240 1.21870 1.20545 0.84793 0.97864 0.90953
1.22404 0.97822 1.00058 0.97743 0.74477 0.84730 0.85838 0.81064
0.80058 0.74997 0.74330 0.87654 0.92888 0.89525 0.95214 0.92751
0.94011 0.97722 0.92597 0.92978 0.93024
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.03 19.25 74.32 1.43 -1.60 16
2 C -0.23 -4.37 12.61 31.13 0.39 -3.98 16
3 C 0.21 3.55 5.53 84.57 0.47 4.02 16
4 N -0.59 -15.39 2.41 -812.19 -1.96 -17.35 16
5 C 0.59 17.84 7.00 86.63 0.61 18.44 16
6 O -0.53 -20.65 13.12 -4.07 -0.05 -20.70 16
7 C -0.04 -1.05 6.74 24.26 0.16 -0.89 16
8 C -0.14 -2.98 10.60 22.32 0.24 -2.75 16
9 C -0.13 -2.42 10.60 22.32 0.24 -2.18 16
10 C -0.06 -1.09 7.14 24.26 0.17 -0.91 16
11 C 0.61 10.16 8.08 86.63 0.70 10.86 16
12 N -0.82 -6.48 8.87 -175.99 -1.56 -8.04 16
13 O -0.55 -12.96 17.70 -4.08 -0.07 -13.03 16
14 O -0.13 -2.45 6.31 -7.34 -0.05 -2.49 16
15 C 0.17 5.36 2.51 45.02 0.11 5.47 16
16 C -0.13 -4.60 5.27 30.67 0.16 -4.43 16
17 C 0.15 6.08 6.52 86.36 0.56 6.64 16
18 N -0.61 -31.57 2.99 -699.12 -2.09 -33.66 16
19 C -0.26 -15.01 9.55 84.03 0.80 -14.21 16
20 H 0.06 3.27 7.83 -2.92 -0.02 3.24 16
21 C -0.04 -2.51 5.28 84.86 0.45 -2.06 16
22 N -0.93 -55.59 10.76 21.65 0.23 -55.35 16
23 Si 0.97 45.95 29.55 68.60 2.03 47.97 16
24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16
25 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16
26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16
27 C 0.18 9.19 5.23 86.36 0.45 9.65 16
28 C -0.14 -5.74 5.26 30.67 0.16 -5.57 16
29 H 0.24 2.56 7.80 -4.41 -0.03 2.52 16
30 H 0.14 1.62 7.78 -2.39 -0.02 1.60 16
31 H 0.12 1.64 5.44 -2.39 -0.01 1.63 16
32 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16
33 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16
34 H 0.42 1.84 8.59 -92.71 -0.80 1.05 16
35 H 0.42 1.78 8.93 -92.70 -0.83 0.96 16
36 H 0.11 2.94 7.70 -2.39 -0.02 2.92 16
37 H 0.05 2.14 6.34 -2.39 -0.02 2.13 16
38 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16
39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16
40 H 0.05 2.22 7.93 -2.39 -0.02 2.21 16
41 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16
42 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16
43 H 0.06 3.23 6.06 -2.39 -0.01 3.22 16
44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
45 H 0.05 2.43 6.08 -2.39 -0.01 2.41 16
Total: -1.00 -76.98 377.67 3.02 -73.96
By element:
Atomic # 1 Polarization: 12.75 SS G_CDS: -0.57 Total: 12.18 kcal
Atomic # 6 Polarization: 9.39 SS G_CDS: 7.11 Total: 16.50 kcal
Atomic # 7 Polarization: -109.03 SS G_CDS: -5.37 Total: -114.40 kcal
Atomic # 8 Polarization: -36.05 SS G_CDS: -0.17 Total: -36.22 kcal
Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal
Total: -76.98 3.02 -73.96 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001483983841.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 88.557 kcal
(2) G-P(sol) polarization free energy of solvation -76.984 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.573 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.963 kcal
(6) G-S(sol) free energy of system = (1) + (5) 14.594 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.54 seconds