Wall clock time and date at job start Wed Apr 1 2020 03:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46886 * 150.75202 * 3 2 1 5 5 C 1.34771 * 119.99702 * 83.02557 * 4 3 2 6 6 O 1.21612 * 119.99919 * 183.74927 * 5 4 3 7 7 C 1.47293 * 120.00548 * 3.74809 * 5 4 3 8 8 C 1.36564 * 125.80662 * 173.51151 * 7 5 4 9 9 C 1.40069 * 106.92532 * 180.02562 * 8 7 5 10 10 C 1.36569 * 106.92462 * 0.02562 * 9 8 7 11 11 C 1.47291 * 125.80872 * 179.97438 * 10 9 8 12 12 N 1.34771 * 120.00301 * 180.02562 * 11 10 9 13 13 O 1.21616 * 119.99690 * 359.97438 * 11 10 9 14 14 O 1.34549 * 125.80163 * 353.80043 * 7 5 4 15 15 C 1.46495 * 119.99918 * 263.02985 * 4 3 2 16 16 C 1.53047 * 109.45666 * 240.06730 * 15 4 3 17 17 C 1.53194 * 109.31147 * 178.61521 * 16 15 4 18 18 N 1.46923 * 108.77571 * 54.63403 * 17 16 15 19 19 C 1.36940 * 120.62769 * 126.41152 * 18 17 16 20 20 H 1.07991 * 120.00559 * 323.88886 * 19 18 17 21 21 C 1.38815 * 119.99506 * 143.89185 * 19 18 17 22 22 N 1.31611 * 120.00465 * 1.85469 * 21 19 18 23 23 Si 1.86808 * 119.99721 * 181.85568 * 21 19 18 24 24 H 1.48497 * 109.47117 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46838 * 119.99787 * 23 21 19 26 26 H 1.48497 * 109.46988 * 239.99668 * 23 21 19 27 27 C 1.46924 * 118.74224 * 306.39345 * 18 17 16 28 28 C 1.53040 * 109.46268 * 119.99940 * 15 4 3 29 29 H 4.40644 * 5.51348 * 180.02562 * 4 1 2 30 30 H 1.08991 * 109.47188 * 30.75632 * 3 2 1 31 31 H 1.08997 * 109.47054 * 270.75178 * 3 2 1 32 32 H 1.07993 * 126.54073 * 359.97438 * 8 7 5 33 33 H 1.07994 * 126.54204 * 180.02562 * 9 8 7 34 34 H 0.96996 * 120.00344 * 359.97438 * 12 11 10 35 35 H 0.97005 * 120.00189 * 179.72447 * 12 11 10 36 36 H 1.08999 * 109.46127 * 0.02562 * 15 4 3 37 37 H 1.09004 * 109.49850 * 298.56412 * 16 15 4 38 38 H 1.09000 * 109.49581 * 58.66130 * 16 15 4 39 39 H 1.09000 * 109.58794 * 294.84464 * 17 16 15 40 40 H 1.09001 * 109.70356 * 174.48880 * 17 16 15 41 41 H 0.97008 * 120.00381 * 180.02562 * 22 21 19 42 42 H 1.09003 * 109.58409 * 293.82146 * 27 18 17 43 43 H 1.08991 * 109.70809 * 173.46653 * 27 18 17 44 44 H 1.08999 * 109.49667 * 301.33874 * 28 15 4 45 45 H 1.09004 * 109.49377 * 61.40126 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 1.2061 -0.6749 5 6 3.2242 2.3677 0.0025 6 8 3.5638 3.3830 -0.5742 7 6 2.9117 2.4075 1.4413 8 6 3.0819 3.4823 2.2665 9 6 2.6622 3.0870 3.5430 10 6 2.2542 1.7876 3.4426 11 6 1.7317 0.9609 4.5440 12 7 1.3618 -0.3143 4.3127 13 8 1.6349 1.4287 5.6624 14 8 2.4149 1.3895 2.1674 15 6 3.5231 1.1487 -2.0860 16 6 4.9954 1.5428 -2.2251 17 6 5.4082 1.4483 -3.6973 18 7 4.4868 2.2639 -4.5001 19 6 4.9656 3.2248 -5.3502 20 1 5.8365 3.8019 -5.0773 21 6 4.3312 3.4569 -6.5629 22 7 3.2484 2.7791 -6.8796 23 14 5.0145 4.7315 -7.7455 24 1 6.2296 5.3507 -7.1579 25 1 5.3646 4.0762 -9.0312 26 1 3.9920 5.7810 -7.9870 27 6 3.0420 2.0287 -4.3738 28 6 2.6556 2.1166 -2.8940 29 1 -1.0502 -0.0003 0.0004 30 1 3.0097 -0.8822 -0.5255 31 1 3.0093 -0.0127 1.0275 32 1 3.4675 4.4519 1.9881 33 1 2.6614 3.6939 4.4362 34 1 1.4394 -0.6876 3.4208 35 1 1.0215 -0.8600 5.0389 36 1 3.3817 0.1350 -2.4608 37 1 5.1331 2.5654 -1.8735 38 1 5.6105 0.8673 -1.6306 39 1 5.3575 0.4100 -4.0251 40 1 6.4256 1.8204 -3.8183 41 1 2.8053 2.9411 -7.7272 42 1 2.7983 1.0377 -4.7568 43 1 2.4959 2.7835 -4.9395 44 1 1.6055 1.8495 -2.7756 45 1 2.8150 3.1336 -2.5358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483983841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:29 Heat of formation + Delta-G solvation = 14.594031 kcal Electronic energy + Delta-G solvation = -30662.097976 eV Core-core repulsion = 26455.362425 eV Total energy + Delta-G solvation = -4206.735551 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -44.01801 -41.36800 -40.33858 -38.70858 -37.21424 -35.02791 -34.83716 -34.16266 -33.45619 -32.15797 -31.50886 -30.86821 -28.15344 -27.25509 -25.60563 -24.11644 -23.81140 -22.91400 -21.93662 -21.57763 -20.68695 -19.80365 -19.15784 -18.82423 -18.12300 -17.97467 -17.66435 -17.26994 -16.76117 -16.30448 -15.95255 -15.54487 -15.53043 -15.39497 -15.34149 -14.85164 -14.78771 -14.67554 -14.33320 -14.28999 -14.18418 -14.01173 -13.67363 -13.22372 -12.95148 -12.80026 -12.63193 -12.27848 -11.99187 -11.86080 -11.79410 -11.59283 -11.51249 -11.43885 -11.30067 -10.98256 -10.93807 -10.90741 -10.53961 -10.07978 -9.80046 -8.53686 -7.86671 -5.42353 -0.53915 0.74999 1.09423 1.41199 1.45631 1.46375 1.57144 1.89581 1.96402 1.97109 2.19507 2.47425 2.49924 3.24820 3.31257 3.50916 3.67756 3.71945 3.80317 3.95620 4.07582 4.15085 4.26553 4.34921 4.37046 4.54110 4.63084 4.71332 4.72294 4.78675 4.85628 4.97889 5.05803 5.07589 5.10071 5.17850 5.34191 5.45380 5.53125 5.58638 5.65933 5.71127 5.79584 6.16184 6.21494 6.46738 6.70036 6.86164 7.02697 7.18893 7.86698 8.40062 9.18047 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022332 B = 0.002646 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.504699 B =10578.570707 C =11116.412129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.232 4.232 3 C 0.208 3.792 4 N -0.591 5.591 5 C 0.594 3.406 6 O -0.532 6.532 7 C -0.044 4.044 8 C -0.136 4.136 9 C -0.128 4.128 10 C -0.060 4.060 11 C 0.613 3.387 12 N -0.816 5.816 13 O -0.553 6.553 14 O -0.134 6.134 15 C 0.168 3.832 16 C -0.135 4.135 17 C 0.148 3.852 18 N -0.612 5.612 19 C -0.263 4.263 20 H 0.058 0.942 21 C -0.044 4.044 22 N -0.932 5.932 23 Si 0.967 3.033 24 H -0.269 1.269 25 H -0.286 1.286 26 H -0.292 1.292 27 C 0.185 3.815 28 C -0.140 4.140 29 H 0.239 0.761 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.172 0.828 33 H 0.182 0.818 34 H 0.419 0.581 35 H 0.423 0.577 36 H 0.106 0.894 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.030 0.970 40 H 0.054 0.946 41 H 0.250 0.750 42 H 0.005 0.995 43 H 0.056 0.944 44 H 0.052 0.948 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 -11.116 22.594 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.233 4.233 3 C 0.088 3.912 4 N -0.321 5.321 5 C 0.382 3.618 6 O -0.410 6.410 7 C -0.098 4.098 8 C -0.156 4.156 9 C -0.148 4.148 10 C -0.114 4.114 11 C 0.397 3.603 12 N -0.381 5.381 13 O -0.433 6.433 14 O -0.030 6.030 15 C 0.067 3.933 16 C -0.174 4.174 17 C 0.022 3.978 18 N -0.336 5.336 19 C -0.394 4.394 20 H 0.076 0.924 21 C -0.239 4.239 22 N -0.578 5.578 23 Si 0.795 3.205 24 H -0.193 1.193 25 H -0.212 1.212 26 H -0.219 1.219 27 C 0.058 3.942 28 C -0.180 4.180 29 H 0.255 0.745 30 H 0.153 0.847 31 H 0.142 0.858 32 H 0.189 0.811 33 H 0.199 0.801 34 H 0.250 0.750 35 H 0.257 0.743 36 H 0.123 0.877 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.023 0.977 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.249 -10.481 22.639 25.307 hybrid contribution -0.240 0.713 -1.169 1.390 sum -4.488 -9.768 21.471 24.012 Atomic orbital electron populations 1.25636 0.96761 0.97670 0.99488 1.23675 0.95306 1.02657 1.01690 1.18980 0.84056 0.87962 1.00238 1.48193 1.62999 1.09259 1.11607 1.17090 0.77670 0.83833 0.83249 1.90909 1.48264 1.34434 1.67385 1.22270 1.06638 0.88539 0.92349 1.22165 1.01404 1.00121 0.91932 1.22172 0.99240 0.94294 0.99139 1.22553 1.08751 0.96484 0.83606 1.16543 0.76884 0.82269 0.84619 1.43535 1.65724 1.11759 1.17034 1.90920 1.56576 1.73240 1.22564 1.84261 1.63684 1.36736 1.18294 1.21046 0.94326 1.00234 0.77735 1.22284 0.95065 1.02017 0.98060 1.21003 0.93438 0.93901 0.89462 1.44223 1.01424 1.39932 1.47974 1.19441 1.12059 1.11951 0.95937 0.92432 1.26028 0.98387 1.01145 0.98389 1.70080 1.20396 1.44397 1.22935 0.85213 0.78052 0.78300 0.78962 1.19310 1.21240 1.21870 1.20545 0.84793 0.97864 0.90953 1.22404 0.97822 1.00058 0.97743 0.74477 0.84730 0.85838 0.81064 0.80058 0.74997 0.74330 0.87654 0.92888 0.89525 0.95214 0.92751 0.94011 0.97722 0.92597 0.92978 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.03 19.25 74.32 1.43 -1.60 16 2 C -0.23 -4.37 12.61 31.13 0.39 -3.98 16 3 C 0.21 3.55 5.53 84.57 0.47 4.02 16 4 N -0.59 -15.39 2.41 -812.19 -1.96 -17.35 16 5 C 0.59 17.84 7.00 86.63 0.61 18.44 16 6 O -0.53 -20.65 13.12 -4.07 -0.05 -20.70 16 7 C -0.04 -1.05 6.74 24.26 0.16 -0.89 16 8 C -0.14 -2.98 10.60 22.32 0.24 -2.75 16 9 C -0.13 -2.42 10.60 22.32 0.24 -2.18 16 10 C -0.06 -1.09 7.14 24.26 0.17 -0.91 16 11 C 0.61 10.16 8.08 86.63 0.70 10.86 16 12 N -0.82 -6.48 8.87 -175.99 -1.56 -8.04 16 13 O -0.55 -12.96 17.70 -4.08 -0.07 -13.03 16 14 O -0.13 -2.45 6.31 -7.34 -0.05 -2.49 16 15 C 0.17 5.36 2.51 45.02 0.11 5.47 16 16 C -0.13 -4.60 5.27 30.67 0.16 -4.43 16 17 C 0.15 6.08 6.52 86.36 0.56 6.64 16 18 N -0.61 -31.57 2.99 -699.12 -2.09 -33.66 16 19 C -0.26 -15.01 9.55 84.03 0.80 -14.21 16 20 H 0.06 3.27 7.83 -2.92 -0.02 3.24 16 21 C -0.04 -2.51 5.28 84.86 0.45 -2.06 16 22 N -0.93 -55.59 10.76 21.65 0.23 -55.35 16 23 Si 0.97 45.95 29.55 68.60 2.03 47.97 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 26 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 27 C 0.18 9.19 5.23 86.36 0.45 9.65 16 28 C -0.14 -5.74 5.26 30.67 0.16 -5.57 16 29 H 0.24 2.56 7.80 -4.41 -0.03 2.52 16 30 H 0.14 1.62 7.78 -2.39 -0.02 1.60 16 31 H 0.12 1.64 5.44 -2.39 -0.01 1.63 16 32 H 0.17 3.62 8.06 -2.91 -0.02 3.59 16 33 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 34 H 0.42 1.84 8.59 -92.71 -0.80 1.05 16 35 H 0.42 1.78 8.93 -92.70 -0.83 0.96 16 36 H 0.11 2.94 7.70 -2.39 -0.02 2.92 16 37 H 0.05 2.14 6.34 -2.39 -0.02 2.13 16 38 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 2.22 7.93 -2.39 -0.02 2.21 16 41 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 42 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.06 3.23 6.06 -2.39 -0.01 3.22 16 44 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.05 2.43 6.08 -2.39 -0.01 2.41 16 Total: -1.00 -76.98 377.67 3.02 -73.96 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -0.57 Total: 12.18 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: 7.11 Total: 16.50 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -5.37 Total: -114.40 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.17 Total: -36.22 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -76.98 3.02 -73.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483983841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.557 kcal (2) G-P(sol) polarization free energy of solvation -76.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds