Wall clock time and date at job start Wed Apr 1 2020 03:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 C 1.52998 * 109.46942 * 179.97438 * 3 2 1 5 5 S 1.81406 * 109.47016 * 179.97438 * 4 3 2 6 6 O 1.42099 * 110.54565 * 68.37603 * 5 4 3 7 7 O 1.42097 * 110.54178 * 291.62229 * 5 4 3 8 8 N 1.65610 * 104.44830 * 179.97438 * 5 4 3 9 9 C 1.46499 * 119.99968 * 64.99724 * 8 5 4 10 10 C 1.50696 * 109.46963 * 164.99781 * 9 8 5 11 11 O 1.21283 * 120.00294 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00211 * 180.02562 * 10 9 8 13 13 C 1.47871 * 126.94247 * 359.97438 * 12 10 9 14 14 C 1.56019 * 105.10436 * 182.00189 * 13 12 10 15 15 H 1.09002 * 116.24915 * 158.83782 * 14 13 12 16 16 C 1.57086 * 99.60505 * 32.81049 * 14 13 12 17 17 C 1.49292 * 126.94738 * 180.02562 * 12 10 9 18 18 H 1.09002 * 116.15114 * 16.70644 * 17 12 10 19 19 C 1.56008 * 104.09261 * 246.69898 * 17 12 10 20 20 N 1.49074 * 105.20962 * 288.09667 * 19 17 12 21 21 C 1.36929 * 127.54713 * 182.01249 * 20 19 17 22 22 H 1.08001 * 120.00040 * 181.21906 * 21 20 19 23 23 C 1.38816 * 119.99943 * 1.21678 * 21 20 19 24 24 N 1.31618 * 119.99826 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99940 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47158 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.47126 * 119.99918 * 25 23 21 28 28 H 1.48494 * 109.47354 * 240.00249 * 25 23 21 29 29 H 1.09003 * 109.46770 * 59.99978 * 1 2 3 30 30 H 1.08997 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46900 * 300.00689 * 1 2 3 32 32 H 1.09000 * 109.47603 * 239.99286 * 2 1 3 33 33 H 1.09005 * 109.46743 * 119.99471 * 2 1 3 34 34 H 1.09000 * 109.47356 * 59.99750 * 3 2 1 35 35 H 1.09003 * 109.47326 * 299.99682 * 3 2 1 36 36 H 1.09000 * 109.47511 * 59.99441 * 4 3 2 37 37 H 1.09001 * 109.47477 * 299.99470 * 4 3 2 38 38 H 0.96993 * 119.99526 * 244.99956 * 8 5 4 39 39 H 1.09002 * 109.46769 * 45.00381 * 9 8 5 40 40 H 1.08994 * 109.47488 * 285.00176 * 9 8 5 41 41 H 1.09004 * 110.31012 * 63.09539 * 13 12 10 42 42 H 1.09001 * 110.31397 * 300.91295 * 13 12 10 43 43 H 1.08994 * 112.37121 * 64.27209 * 16 14 13 44 44 H 1.09002 * 112.36511 * 191.71430 * 16 14 13 45 45 H 1.09000 * 110.32155 * 47.67074 * 19 17 12 46 46 H 1.09003 * 110.31912 * 169.86153 * 19 17 12 47 47 H 0.97006 * 119.99328 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 16 4.1747 3.1527 -0.0001 6 8 3.8781 3.7871 1.2363 7 8 3.8792 3.7855 -1.2376 8 7 5.8245 3.0077 0.0014 9 6 6.5081 2.4085 -1.1474 10 6 7.9807 2.7203 -1.0742 11 8 8.4163 3.3779 -0.1529 12 7 8.8137 2.2685 -2.0326 13 6 8.4513 1.4590 -3.2158 14 6 9.8011 1.1807 -3.9469 15 1 9.8155 0.3266 -4.6240 16 6 10.7613 1.1077 -2.7058 17 6 10.2888 2.4832 -2.1136 18 1 10.7777 2.8113 -1.1962 19 6 10.4728 3.3855 -3.3729 20 7 10.1963 2.4949 -4.5359 21 6 10.2657 2.8133 -5.8659 22 1 10.0188 2.0726 -6.6121 23 6 10.6534 4.0881 -6.2550 24 7 10.9547 4.9906 -5.3456 25 14 10.7474 4.5227 -8.0693 26 1 10.3609 3.3414 -8.8819 27 1 9.8201 5.6463 -8.3579 28 1 12.1351 4.9261 -8.4105 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.9338 0.9284 -0.8890 37 1 3.9330 0.9288 0.8909 38 1 6.3379 3.3195 0.7629 39 1 6.0956 2.8177 -2.0696 40 1 6.3643 1.3282 -1.1330 41 1 7.7775 2.0183 -3.8649 42 1 7.9884 0.5221 -2.9059 43 1 10.5263 0.2709 -2.0482 44 1 11.8126 1.1190 -2.9935 45 1 9.7706 4.2188 -3.3474 46 1 11.4970 3.7543 -3.4280 47 1 11.2260 5.8814 -5.6176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494683245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:53 Heat of formation + Delta-G solvation = -57.848213 kcal Electronic energy + Delta-G solvation = -28832.787762 eV Core-core repulsion = 24758.354831 eV Total energy + Delta-G solvation = -4074.432931 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.19635 -38.19855 -37.25818 -36.27006 -36.06077 -34.72385 -33.69079 -31.69329 -30.91425 -29.31772 -28.63569 -26.91195 -25.25752 -24.77422 -23.48363 -21.75376 -20.83333 -19.96107 -19.56514 -18.71655 -18.05170 -17.11204 -16.74995 -16.60550 -16.20864 -15.99937 -15.83559 -15.24040 -14.90153 -14.41628 -14.32294 -14.01187 -13.77406 -13.68027 -13.27440 -13.18861 -12.74854 -12.44134 -12.27266 -12.17403 -12.14418 -12.10287 -12.01393 -11.96071 -11.75388 -11.71954 -11.35533 -11.12425 -11.09470 -10.92507 -10.85283 -10.79923 -10.66345 -10.33503 -10.09610 -9.84715 -9.68642 -9.57846 -8.77658 -8.16200 -6.99178 -5.81701 -3.16309 0.01433 2.45240 2.80906 3.23050 3.35332 3.40005 3.43658 3.56609 3.93198 4.10833 4.37372 4.38394 4.47511 4.50446 4.73502 4.91905 4.96366 5.01162 5.07104 5.09312 5.15870 5.19831 5.30691 5.30790 5.42250 5.45006 5.50525 5.55209 5.61263 5.67625 5.70646 5.78994 5.83583 6.06652 6.17370 6.31289 6.37906 6.51071 6.58768 6.84957 7.34921 7.39286 7.65401 7.91537 8.02433 8.35396 9.03119 9.65886 10.34615 11.31202 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.002541 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.617196 B =11015.736420 C =11392.464184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.116 4.116 3 C -0.114 4.114 4 C -0.632 4.632 5 S 2.614 3.386 6 O -0.955 6.955 7 O -0.951 6.951 8 N -1.107 6.107 9 C 0.100 3.900 10 C 0.527 3.473 11 O -0.547 6.547 12 N -0.604 5.604 13 C 0.076 3.924 14 C 0.141 3.859 15 H 0.107 0.893 16 C -0.151 4.151 17 C 0.100 3.900 18 H 0.115 0.885 19 C 0.171 3.829 20 N -0.597 5.597 21 C -0.232 4.232 22 H 0.082 0.918 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.913 3.087 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.290 1.290 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.427 0.573 39 H 0.109 0.891 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.057 0.943 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.047 0.953 46 H 0.060 0.940 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.522 -13.671 10.819 22.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.153 4.153 4 C -0.761 4.761 5 S 2.706 3.294 6 O -0.945 6.945 7 O -0.941 6.941 8 N -0.870 5.870 9 C -0.030 4.030 10 C 0.313 3.687 11 O -0.426 6.426 12 N -0.337 5.337 13 C -0.050 4.050 14 C 0.032 3.968 15 H 0.125 0.875 16 C -0.191 4.191 17 C -0.003 4.003 18 H 0.133 0.867 19 C 0.046 3.954 20 N -0.321 5.321 21 C -0.360 4.360 22 H 0.100 0.900 23 C -0.203 4.203 24 N -0.564 5.564 25 Si 0.744 3.256 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.217 1.217 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.265 0.735 39 H 0.127 0.873 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.836 -12.294 11.013 22.193 hybrid contribution 0.385 -0.248 -0.707 0.842 sum -14.451 -12.542 10.306 21.733 Atomic orbital electron populations 1.21819 0.95415 1.02022 1.02234 1.21479 0.96129 0.95219 1.02669 1.21378 0.90123 0.99969 1.03844 1.30664 1.06839 1.26677 1.11898 1.04922 0.72813 0.77184 0.74455 1.93611 1.82931 1.72827 1.45164 1.93629 1.83208 1.71803 1.45416 1.55349 1.25699 1.77963 1.27951 1.21055 0.92589 0.98837 0.90521 1.19795 0.87308 0.79884 0.81700 1.90666 1.77270 1.40195 1.34446 1.49202 1.09126 1.52104 1.23300 1.23428 1.01135 0.93623 0.86780 1.23155 0.90040 0.91300 0.92327 0.87522 1.24168 1.00861 0.95838 0.98221 1.24366 0.78478 0.97749 0.99673 0.86698 1.22130 1.00856 0.90689 0.81694 1.45534 1.78912 1.05821 1.01850 1.19070 1.39934 0.96411 0.80590 0.89988 1.24835 1.01380 0.96195 0.97846 1.69909 1.51040 1.04352 1.31139 0.86037 0.77323 0.78101 0.84184 1.20442 1.21733 1.21725 0.92371 0.92398 0.92475 0.91410 0.91547 0.90260 0.90111 0.84837 0.84717 0.73483 0.87279 0.89161 0.90661 0.92432 0.91654 0.89616 0.93439 0.92216 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.66 5.93 -26.73 -0.16 -0.82 16 3 C -0.11 -0.76 5.22 -26.73 -0.14 -0.90 16 4 C -0.63 -4.04 6.07 37.16 0.23 -3.82 16 5 S 2.61 28.17 5.46 -107.50 -0.59 27.58 16 6 O -0.96 -13.16 18.08 -57.54 -1.04 -14.20 16 7 O -0.95 -13.75 17.50 -57.54 -1.01 -14.75 16 8 N -1.11 -12.88 5.82 -11.66 -0.07 -12.95 16 9 C 0.10 1.19 5.90 -5.20 -0.03 1.16 16 10 C 0.53 8.66 7.96 -10.99 -0.09 8.57 16 11 O -0.55 -10.66 16.08 5.55 0.09 -10.57 16 12 N -0.60 -10.10 2.95 -156.82 -0.46 -10.56 16 13 C 0.08 1.14 6.03 -1.67 -0.01 1.13 16 14 C 0.14 2.40 5.48 -62.52 -0.34 2.06 16 15 H 0.11 1.61 8.14 -51.93 -0.42 1.18 16 16 C -0.15 -2.35 6.80 -22.33 -0.15 -2.50 16 17 C 0.10 1.81 5.24 -62.59 -0.33 1.48 16 18 H 0.12 2.03 8.06 -51.93 -0.42 1.61 16 19 C 0.17 3.95 4.82 -1.01 0.00 3.94 16 20 N -0.60 -13.73 3.09 -155.33 -0.48 -14.21 16 21 C -0.23 -5.99 10.38 -15.06 -0.16 -6.15 16 22 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 24 N -0.92 -26.41 10.66 55.49 0.59 -25.82 16 25 Si 0.91 21.42 29.55 -169.99 -5.02 16.39 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.13 0.62 8.14 -51.92 -0.42 0.19 16 37 H 0.13 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.43 5.30 7.66 -34.47 -0.26 5.03 16 39 H 0.11 1.32 7.70 -51.93 -0.40 0.92 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.05 1.28 7.77 -51.93 -0.40 0.87 16 46 H 0.06 1.53 7.44 -51.93 -0.39 1.14 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -36.01 392.64 -10.74 -46.75 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.76 Total: 2.97 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.91 Total: 3.44 kcal Atomic # 7 Polarization: -63.12 SS G_CDS: -0.42 Total: -63.54 kcal Atomic # 8 Polarization: -37.56 SS G_CDS: -1.96 Total: -39.52 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 28.17 SS G_CDS: -0.59 Total: 27.58 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.01 -10.74 -46.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494683245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.101 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds