Wall clock time and date at job start Wed Apr 1 2020 03:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47102 * 2 1 4 4 C 1.52998 * 109.46942 * 179.97438 * 3 2 1 5 5 S 1.81406 * 109.47016 * 179.97438 * 4 3 2 6 6 O 1.42099 * 110.54565 * 68.37603 * 5 4 3 7 7 O 1.42097 * 110.54178 * 291.62229 * 5 4 3 8 8 N 1.65610 * 104.44830 * 179.97438 * 5 4 3 9 9 C 1.46499 * 119.99968 * 64.99724 * 8 5 4 10 10 C 1.50696 * 109.46963 * 164.99781 * 9 8 5 11 11 O 1.21283 * 120.00294 * 0.02562 * 10 9 8 12 12 N 1.34776 * 120.00211 * 180.02562 * 10 9 8 13 13 C 1.47871 * 126.94247 * 359.97438 * 12 10 9 14 14 C 1.56019 * 105.10436 * 182.00189 * 13 12 10 15 15 H 1.09002 * 116.24915 * 158.83782 * 14 13 12 16 16 C 1.57086 * 99.60505 * 32.81049 * 14 13 12 17 17 C 1.49292 * 126.94738 * 180.02562 * 12 10 9 18 18 H 1.09002 * 116.15114 * 16.70644 * 17 12 10 19 19 C 1.56008 * 104.09261 * 246.69898 * 17 12 10 20 20 N 1.49074 * 105.20962 * 288.09667 * 19 17 12 21 21 C 1.36929 * 127.54713 * 182.01249 * 20 19 17 22 22 H 1.08001 * 120.00040 * 181.21906 * 21 20 19 23 23 C 1.38816 * 119.99943 * 1.21678 * 21 20 19 24 24 N 1.31618 * 119.99826 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99940 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47158 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.47126 * 119.99918 * 25 23 21 28 28 H 1.48494 * 109.47354 * 240.00249 * 25 23 21 29 29 H 1.09003 * 109.46770 * 59.99978 * 1 2 3 30 30 H 1.08997 * 109.47266 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46900 * 300.00689 * 1 2 3 32 32 H 1.09000 * 109.47603 * 239.99286 * 2 1 3 33 33 H 1.09005 * 109.46743 * 119.99471 * 2 1 3 34 34 H 1.09000 * 109.47356 * 59.99750 * 3 2 1 35 35 H 1.09003 * 109.47326 * 299.99682 * 3 2 1 36 36 H 1.09000 * 109.47511 * 59.99441 * 4 3 2 37 37 H 1.09001 * 109.47477 * 299.99470 * 4 3 2 38 38 H 0.96993 * 119.99526 * 244.99956 * 8 5 4 39 39 H 1.09002 * 109.46769 * 45.00381 * 9 8 5 40 40 H 1.08994 * 109.47488 * 285.00176 * 9 8 5 41 41 H 1.09004 * 110.31012 * 63.09539 * 13 12 10 42 42 H 1.09001 * 110.31397 * 300.91295 * 13 12 10 43 43 H 1.08994 * 112.37121 * 64.27209 * 16 14 13 44 44 H 1.09002 * 112.36511 * 191.71430 * 16 14 13 45 45 H 1.09000 * 110.32155 * 47.67074 * 19 17 12 46 46 H 1.09003 * 110.31912 * 169.86153 * 19 17 12 47 47 H 0.97006 * 119.99328 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 16 4.1747 3.1527 -0.0001 6 8 3.8781 3.7871 1.2363 7 8 3.8792 3.7855 -1.2376 8 7 5.8245 3.0077 0.0014 9 6 6.5081 2.4085 -1.1474 10 6 7.9807 2.7203 -1.0742 11 8 8.4163 3.3779 -0.1529 12 7 8.8137 2.2685 -2.0326 13 6 8.4513 1.4590 -3.2158 14 6 9.8011 1.1807 -3.9469 15 1 9.8155 0.3266 -4.6240 16 6 10.7613 1.1077 -2.7058 17 6 10.2888 2.4832 -2.1136 18 1 10.7777 2.8113 -1.1962 19 6 10.4728 3.3855 -3.3729 20 7 10.1963 2.4949 -4.5359 21 6 10.2657 2.8133 -5.8659 22 1 10.0188 2.0726 -6.6121 23 6 10.6534 4.0881 -6.2550 24 7 10.9547 4.9906 -5.3456 25 14 10.7474 4.5227 -8.0693 26 1 10.3609 3.3414 -8.8819 27 1 9.8201 5.6463 -8.3579 28 1 12.1351 4.9261 -8.4105 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8935 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6768 1.9563 -0.8900 36 1 3.9338 0.9284 -0.8890 37 1 3.9330 0.9288 0.8909 38 1 6.3379 3.3195 0.7629 39 1 6.0956 2.8177 -2.0696 40 1 6.3643 1.3282 -1.1330 41 1 7.7775 2.0183 -3.8649 42 1 7.9884 0.5221 -2.9059 43 1 10.5263 0.2709 -2.0482 44 1 11.8126 1.1190 -2.9935 45 1 9.7706 4.2188 -3.3474 46 1 11.4970 3.7543 -3.4280 47 1 11.2260 5.8814 -5.6176 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001494683245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:52 Heat of formation + Delta-G solvation = -85.829510 kcal Electronic energy + Delta-G solvation = -28834.001122 eV Core-core repulsion = 24758.354831 eV Total energy + Delta-G solvation = -4075.646292 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.57166 -39.55788 -38.22142 -37.09139 -36.64926 -35.70868 -35.43300 -33.33963 -31.38102 -30.89570 -30.19997 -27.97882 -26.94939 -25.26845 -25.07395 -22.27983 -22.18236 -21.39978 -20.44339 -20.10564 -19.21441 -18.48654 -17.85164 -17.63645 -17.27610 -17.20185 -16.77505 -16.45864 -16.13088 -15.74568 -15.44622 -15.10718 -14.79751 -14.59957 -14.24174 -13.98312 -13.82299 -13.77369 -13.54142 -13.32080 -13.26923 -13.22032 -13.12146 -13.02889 -12.80551 -12.74223 -12.64706 -12.44398 -12.28909 -12.14346 -12.10135 -11.98676 -11.85184 -11.50899 -11.50267 -11.45608 -11.08864 -10.75530 -10.51131 -9.55090 -8.89913 -7.84509 -5.19104 -0.78580 1.47121 1.47867 1.51829 1.57825 1.60779 2.04316 2.49179 2.80251 3.21112 3.31041 3.35445 3.47907 3.57992 3.79692 3.85265 3.92934 4.03732 4.06643 4.17366 4.25114 4.30091 4.33119 4.47322 4.59549 4.61443 4.66535 4.72880 4.75453 4.87071 4.93558 4.98147 5.00875 5.06928 5.18497 5.24259 5.30185 5.32637 5.46797 5.47054 5.52130 5.65743 5.89139 6.09727 6.64315 7.01654 7.07850 7.71595 8.43251 9.27736 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.002541 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.617196 B =11015.736420 C =11392.464184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.114 4.114 3 C -0.128 4.128 4 C -0.596 4.596 5 S 2.611 3.389 6 O -0.995 6.995 7 O -0.998 6.998 8 N -1.113 6.113 9 C 0.103 3.897 10 C 0.518 3.482 11 O -0.587 6.587 12 N -0.607 5.607 13 C 0.082 3.918 14 C 0.133 3.867 15 H 0.138 0.862 16 C -0.127 4.127 17 C 0.102 3.898 18 H 0.114 0.886 19 C 0.182 3.818 20 N -0.619 5.619 21 C -0.222 4.222 22 H 0.099 0.901 23 C -0.076 4.076 24 N -0.959 5.959 25 Si 0.974 3.026 26 H -0.255 1.255 27 H -0.303 1.303 28 H -0.298 1.298 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.166 0.834 37 H 0.165 0.835 38 H 0.422 0.578 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.057 0.943 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.077 0.923 45 H -0.007 1.007 46 H 0.018 0.982 47 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.163 -18.624 10.843 26.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.153 4.153 3 C -0.167 4.167 4 C -0.730 4.730 5 S 2.710 3.290 6 O -0.986 6.986 7 O -0.988 6.988 8 N -0.874 5.874 9 C -0.027 4.027 10 C 0.306 3.694 11 O -0.468 6.468 12 N -0.340 5.340 13 C -0.042 4.042 14 C 0.027 3.973 15 H 0.155 0.845 16 C -0.166 4.166 17 C -0.001 4.001 18 H 0.132 0.868 19 C 0.056 3.944 20 N -0.344 5.344 21 C -0.351 4.351 22 H 0.117 0.883 23 C -0.268 4.268 24 N -0.609 5.609 25 Si 0.804 3.196 26 H -0.179 1.179 27 H -0.231 1.231 28 H -0.226 1.226 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.184 0.816 37 H 0.183 0.817 38 H 0.259 0.741 39 H 0.124 0.876 40 H 0.168 0.832 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.127 0.873 44 H 0.095 0.905 45 H 0.011 0.989 46 H 0.036 0.964 47 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.487 -17.274 11.023 26.300 hybrid contribution 0.834 1.209 -0.675 1.617 sum -15.653 -16.065 10.347 24.702 Atomic orbital electron populations 1.21864 0.95609 1.02444 1.02065 1.21493 0.96023 0.94134 1.03656 1.21560 0.90201 1.01081 1.03903 1.30387 1.06437 1.21105 1.15058 1.04838 0.72258 0.79256 0.72681 1.93554 1.83235 1.75452 1.46310 1.93567 1.83620 1.74781 1.46860 1.55312 1.25832 1.78632 1.27638 1.21256 0.88720 1.02247 0.90432 1.20648 0.89068 0.78805 0.80861 1.90649 1.78346 1.41694 1.36132 1.49276 1.08315 1.52455 1.23991 1.23400 0.99513 0.95594 0.85714 1.23633 0.91381 0.89251 0.93075 0.84465 1.24058 0.99996 0.95040 0.97539 1.24128 0.80493 0.98287 0.97232 0.86844 1.21732 0.96883 0.90748 0.85001 1.45799 1.79088 1.08424 1.01041 1.19583 1.36820 0.96231 0.82466 0.88291 1.25665 1.02889 0.96810 1.01470 1.70157 1.53692 1.04225 1.32834 0.85050 0.76293 0.77967 0.80292 1.17892 1.23115 1.22605 0.92685 0.91676 0.92644 0.90418 0.90518 0.90406 0.90374 0.81611 0.81732 0.74088 0.87588 0.83246 0.92467 0.86119 0.87285 0.90488 0.98880 0.96428 0.94900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.91 71.98 0.71 -0.61 16 2 C -0.11 -0.85 5.93 30.59 0.18 -0.67 16 3 C -0.13 -1.32 5.22 30.59 0.16 -1.16 16 4 C -0.60 -5.07 6.07 71.98 0.44 -4.63 16 5 S 2.61 53.29 5.46 -56.49 -0.31 52.98 16 6 O -0.99 -27.56 18.08 -127.65 -2.31 -29.87 16 7 O -1.00 -28.83 17.50 -127.65 -2.23 -31.06 16 8 N -1.11 -24.28 5.82 -190.80 -1.11 -25.39 16 9 C 0.10 2.14 5.90 85.63 0.51 2.64 16 10 C 0.52 16.25 7.96 87.66 0.70 16.95 16 11 O -0.59 -23.01 16.08 -3.04 -0.05 -23.05 16 12 N -0.61 -19.11 2.95 -768.44 -2.27 -21.37 16 13 C 0.08 2.11 6.03 87.16 0.53 2.64 16 14 C 0.13 4.06 5.48 46.92 0.26 4.32 16 15 H 0.14 3.39 8.14 -2.39 -0.02 3.37 16 16 C -0.13 -3.53 6.80 33.44 0.23 -3.31 16 17 C 0.10 3.66 5.24 46.91 0.25 3.91 16 18 H 0.11 4.08 8.06 -2.39 -0.02 4.06 16 19 C 0.18 8.84 4.82 86.92 0.42 9.26 16 20 N -0.62 -28.40 3.09 -645.36 -1.99 -30.40 16 21 C -0.22 -11.43 10.38 84.04 0.87 -10.56 16 22 H 0.10 4.65 7.83 -2.91 -0.02 4.63 16 23 C -0.08 -4.24 5.49 84.86 0.47 -3.77 16 24 N -0.96 -58.66 10.66 21.65 0.23 -58.43 16 25 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 26 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 27 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 28 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.17 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.42 10.34 7.66 -96.75 -0.74 9.60 16 39 H 0.11 2.33 7.70 -2.39 -0.02 2.31 16 40 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 45 H -0.01 -0.41 7.77 -2.39 -0.02 -0.43 16 46 H 0.02 0.98 7.44 -2.39 -0.02 0.96 16 47 H 0.24 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -87.04 392.64 -2.08 -89.12 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.22 Total: 15.33 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 5.71 Total: 15.01 kcal Atomic # 7 Polarization: -130.44 SS G_CDS: -5.14 Total: -135.58 kcal Atomic # 8 Polarization: -79.40 SS G_CDS: -4.59 Total: -83.99 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Atomic # 16 Polarization: 53.29 SS G_CDS: -0.31 Total: 52.98 kcal Total: -87.04 -2.08 -89.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494683245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.291 kcal (2) G-P(sol) polarization free energy of solvation -87.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds