Wall clock time and date at job start Wed Apr 1 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34769 * 119.99943 * 180.02562 * 7 6 4 9 9 O 1.21516 * 120.00120 * 359.97438 * 8 7 6 10 10 C 1.48173 * 120.00082 * 179.97438 * 8 7 6 11 11 C 1.39307 * 119.72408 * 179.72802 * 10 8 7 12 12 C 1.38587 * 119.06075 * 179.75821 * 11 10 8 13 13 C 1.38629 * 118.48586 * 0.50729 * 12 11 10 14 14 C 1.50703 * 120.32312 * 179.75465 * 13 12 11 15 15 F 1.39906 * 109.47090 * 179.97438 * 14 13 12 16 16 F 1.39899 * 109.46940 * 299.97670 * 14 13 12 17 17 F 1.39900 * 109.47136 * 59.97719 * 14 13 12 18 18 C 1.38552 * 119.35240 * 359.73302 * 13 12 11 19 19 N 1.31520 * 120.90597 * 0.02562 * 18 13 12 20 20 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 21 21 C 1.36936 * 120.00314 * 84.99627 * 20 4 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 4 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 30 30 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 31 31 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 33 33 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 35 35 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 36 36 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 37 37 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 38 38 H 0.97003 * 120.00245 * 0.02562 * 7 6 4 39 39 H 1.08000 * 120.46893 * 359.97438 * 11 10 8 40 40 H 1.08001 * 120.76001 * 180.23990 * 12 11 10 41 41 H 1.08007 * 119.55016 * 180.02562 * 18 13 12 42 42 H 0.97000 * 120.00040 * 264.99759 * 20 4 2 43 43 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0432 -4.7526 1.8255 10 6 2.3971 -4.9176 3.7261 11 6 2.0702 -6.2560 3.9322 12 6 2.6350 -6.9297 5.0036 13 6 3.4993 -6.2381 5.8381 14 6 4.1325 -6.9286 7.0185 15 9 4.9574 -6.0265 7.6991 16 9 3.1320 -7.3882 7.8817 17 9 4.8959 -8.0120 6.5706 18 6 3.7756 -4.9059 5.5761 19 7 3.2294 -4.2920 4.5492 20 7 3.5049 -0.7208 1.2496 21 6 4.1892 0.3542 1.7510 22 1 3.6489 1.2015 2.1467 23 6 5.5773 0.3548 1.7508 24 7 6.2349 1.3904 2.2279 25 14 6.5120 -1.1104 1.0659 26 1 6.7659 -2.0882 2.1543 27 1 5.7067 -1.7561 -0.0017 28 1 7.8062 -0.6517 0.5007 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 0.4436 -2.1650 1.3388 37 1 1.8183 -2.6511 0.3179 38 1 2.7226 -2.4349 2.9849 39 1 1.3890 -6.7625 3.2645 40 1 2.4038 -7.9687 5.1867 41 1 4.4488 -4.3641 6.2240 42 1 3.9903 -1.4819 0.8946 43 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496586540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:04 Heat of formation + Delta-G solvation = -142.133354 kcal Electronic energy + Delta-G solvation = -30210.460380 eV Core-core repulsion = 25455.071879 eV Total energy + Delta-G solvation = -4755.388501 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.55210 -48.06121 -48.01645 -41.00890 -39.21282 -37.41832 -34.31120 -33.46455 -33.15404 -32.30422 -30.85338 -28.66073 -26.97436 -26.24550 -24.44388 -23.98559 -23.02966 -21.78087 -20.70313 -19.63238 -19.01995 -18.88436 -18.80965 -18.31479 -17.28840 -17.01825 -15.69351 -15.60473 -15.29888 -15.08744 -14.88325 -14.80136 -14.67409 -14.43895 -14.21419 -14.15866 -14.08877 -14.04159 -13.77600 -13.60667 -13.55543 -13.04963 -12.91350 -12.49224 -12.31142 -12.20311 -11.67292 -11.29624 -11.10974 -10.90167 -10.74460 -10.61028 -10.46480 -10.25648 -10.18382 -10.06289 -9.84491 -9.83474 -9.50623 -8.97366 -8.87041 -7.35377 -5.82348 -3.18568 -0.07561 0.67856 2.17628 2.41603 3.02161 3.26235 3.33938 3.37297 3.42298 3.42935 3.55118 3.84866 3.99376 4.18981 4.41648 4.52168 4.54240 4.73401 5.09792 5.18831 5.23984 5.31219 5.37309 5.42900 5.55007 5.65619 5.70290 5.84304 5.92366 6.00666 6.14616 6.25035 6.35193 6.42496 6.53717 6.55341 6.73980 6.97384 7.17953 7.31958 7.66718 7.92693 8.18479 8.35622 9.13175 9.85688 10.04199 11.35212 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.003116 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.131358 B = 8983.813368 C =10662.206631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.064 0.936 6 C 0.106 3.894 7 N -0.689 5.689 8 C 0.561 3.439 9 O -0.538 6.538 10 C 0.118 3.882 11 C -0.118 4.118 12 C -0.028 4.028 13 C -0.228 4.228 14 C 0.517 3.483 15 F -0.171 7.171 16 F -0.174 7.174 17 F -0.173 7.173 18 C 0.156 3.844 19 N -0.446 5.446 20 N -0.746 5.746 21 C -0.241 4.241 22 H 0.095 0.905 23 C 0.010 3.990 24 N -0.930 5.930 25 Si 0.877 3.123 26 H -0.284 1.284 27 H -0.278 1.278 28 H -0.292 1.292 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.422 0.578 39 H 0.162 0.838 40 H 0.153 0.847 41 H 0.179 0.821 42 H 0.362 0.638 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.000 -16.365 6.693 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.082 0.918 6 C -0.018 4.018 7 N -0.340 5.340 8 C 0.344 3.656 9 O -0.416 6.416 10 C -0.020 4.020 11 C -0.138 4.138 12 C -0.054 4.054 13 C -0.232 4.232 14 C 0.462 3.538 15 F -0.152 7.152 16 F -0.155 7.155 17 F -0.155 7.155 18 C -0.004 4.004 19 N -0.156 5.156 20 N -0.389 5.389 21 C -0.371 4.371 22 H 0.113 0.887 23 C -0.186 4.186 24 N -0.577 5.577 25 Si 0.708 3.292 26 H -0.211 1.211 27 H -0.205 1.205 28 H -0.219 1.219 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.261 0.739 39 H 0.179 0.821 40 H 0.171 0.829 41 H 0.196 0.804 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.264 -15.610 6.095 19.148 hybrid contribution 1.126 -1.784 0.148 2.115 sum -8.138 -17.394 6.243 20.193 Atomic orbital electron populations 1.21946 0.96615 1.00940 1.01246 1.21699 0.93777 0.98113 0.99411 1.21825 1.04464 0.94151 0.99249 1.20536 0.85169 0.90945 0.96886 0.91781 1.21948 0.98002 0.93385 0.88441 1.45962 1.47325 1.10190 1.30513 1.17776 0.81626 0.82514 0.83688 1.90782 1.36311 1.68181 1.46299 1.21683 0.93539 0.92292 0.94499 1.22144 0.99846 0.94190 0.97650 1.21375 0.91649 1.00619 0.91719 1.21285 1.04869 0.98086 0.98955 1.18009 0.76430 0.76883 0.82467 1.93209 1.73293 1.67222 1.81492 1.93237 1.60844 1.89377 1.72048 1.93241 1.76670 1.56484 1.89082 1.22848 0.94796 0.89738 0.93057 1.67894 1.06996 1.37824 1.02934 1.42837 1.00283 1.20883 1.74888 1.19027 0.89264 0.96236 1.32548 0.88707 1.24625 0.96177 0.96958 1.00817 1.69688 1.07079 1.29561 1.51362 0.86672 0.79963 0.83511 0.79072 1.21054 1.20467 1.21872 0.92957 0.93367 0.93098 0.91981 0.89245 0.94947 0.93734 0.90653 0.91435 0.73915 0.82070 0.82900 0.80394 0.80540 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.84 37.16 0.33 -1.62 16 2 C -0.11 -1.73 2.69 -90.62 -0.24 -1.97 16 3 C -0.14 -2.47 8.26 37.16 0.31 -2.16 16 4 C 0.17 3.00 2.18 -67.93 -0.15 2.85 16 5 H 0.06 1.15 8.08 -51.92 -0.42 0.73 16 6 C 0.11 1.63 4.73 -4.04 -0.02 1.61 16 7 N -0.69 -10.85 5.38 -61.14 -0.33 -11.18 16 8 C 0.56 8.60 7.81 -12.18 -0.10 8.50 16 9 O -0.54 -9.09 16.32 5.35 0.09 -9.00 16 10 C 0.12 1.57 6.75 -83.01 -0.56 1.01 16 11 C -0.12 -1.21 9.63 -39.06 -0.38 -1.58 16 12 C -0.03 -0.23 9.76 -39.31 -0.38 -0.62 16 13 C -0.23 -2.17 5.39 -104.36 -0.56 -2.73 16 14 C 0.52 4.64 3.33 36.01 0.12 4.76 16 15 F -0.17 -1.62 16.00 2.25 0.04 -1.59 16 16 F -0.17 -1.56 17.24 2.25 0.04 -1.52 16 17 F -0.17 -1.62 17.24 2.25 0.04 -1.59 16 18 C 0.16 1.72 10.59 -17.57 -0.19 1.53 16 19 N -0.45 -6.03 9.54 -9.80 -0.09 -6.12 16 20 N -0.75 -15.77 4.24 -53.43 -0.23 -16.00 16 21 C -0.24 -6.12 8.05 -15.06 -0.12 -6.24 16 22 H 0.10 2.59 7.63 -52.49 -0.40 2.19 16 23 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 24 N -0.93 -27.73 13.97 55.49 0.78 -26.95 16 25 Si 0.88 21.31 27.74 -169.99 -4.72 16.59 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.28 -6.47 6.51 56.52 0.37 -6.10 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.61 6.54 -51.93 -0.34 0.27 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.91 6.01 -51.93 -0.31 1.60 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 36 H 0.08 1.06 6.71 -51.93 -0.35 0.71 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.42 7.05 7.47 -40.82 -0.30 6.74 16 39 H 0.16 1.45 7.64 -52.49 -0.40 1.05 16 40 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 41 H 0.18 1.66 7.16 -52.48 -0.38 1.29 16 42 H 0.36 7.85 5.66 -40.82 -0.23 7.61 16 43 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 370.03 15.07 5.58 5.58 Total: -1.00 -29.86 370.03 -6.11 -35.96 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -5.26 Total: 12.28 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.04 Total: 3.54 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.13 Total: -60.26 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.11 Total: -4.70 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.72 Total: 16.59 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.86 -6.11 -35.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496586540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.168 kcal (2) G-P(sol) polarization free energy of solvation -29.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds