Wall clock time and date at job start Wed Apr 1 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34769 * 119.99943 * 180.02562 * 7 6 4 9 9 O 1.21516 * 120.00120 * 359.97438 * 8 7 6 10 10 C 1.48173 * 120.00082 * 179.97438 * 8 7 6 11 11 C 1.39307 * 119.72408 * 179.72802 * 10 8 7 12 12 C 1.38587 * 119.06075 * 179.75821 * 11 10 8 13 13 C 1.38629 * 118.48586 * 0.50729 * 12 11 10 14 14 C 1.50703 * 120.32312 * 179.75465 * 13 12 11 15 15 F 1.39906 * 109.47090 * 179.97438 * 14 13 12 16 16 F 1.39899 * 109.46940 * 299.97670 * 14 13 12 17 17 F 1.39900 * 109.47136 * 59.97719 * 14 13 12 18 18 C 1.38552 * 119.35240 * 359.73302 * 13 12 11 19 19 N 1.31520 * 120.90597 * 0.02562 * 18 13 12 20 20 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 21 21 C 1.36936 * 120.00314 * 84.99627 * 20 4 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 4 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 30 30 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 31 31 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 33 33 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 35 35 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 36 36 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 37 37 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 38 38 H 0.97003 * 120.00245 * 0.02562 * 7 6 4 39 39 H 1.08000 * 120.46893 * 359.97438 * 11 10 8 40 40 H 1.08001 * 120.76001 * 180.23990 * 12 11 10 41 41 H 1.08007 * 119.55016 * 180.02562 * 18 13 12 42 42 H 0.97000 * 120.00040 * 264.99759 * 20 4 2 43 43 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0432 -4.7526 1.8255 10 6 2.3971 -4.9176 3.7261 11 6 2.0702 -6.2560 3.9322 12 6 2.6350 -6.9297 5.0036 13 6 3.4993 -6.2381 5.8381 14 6 4.1325 -6.9286 7.0185 15 9 4.9574 -6.0265 7.6991 16 9 3.1320 -7.3882 7.8817 17 9 4.8959 -8.0120 6.5706 18 6 3.7756 -4.9059 5.5761 19 7 3.2294 -4.2920 4.5492 20 7 3.5049 -0.7208 1.2496 21 6 4.1892 0.3542 1.7510 22 1 3.6489 1.2015 2.1467 23 6 5.5773 0.3548 1.7508 24 7 6.2349 1.3904 2.2279 25 14 6.5120 -1.1104 1.0659 26 1 6.7659 -2.0882 2.1543 27 1 5.7067 -1.7561 -0.0017 28 1 7.8062 -0.6517 0.5007 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 0.4436 -2.1650 1.3388 37 1 1.8183 -2.6511 0.3179 38 1 2.7226 -2.4349 2.9849 39 1 1.3890 -6.7625 3.2645 40 1 2.4038 -7.9687 5.1867 41 1 4.4488 -4.3641 6.2240 42 1 3.9903 -1.4819 0.8946 43 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496586540.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:03 Heat of formation + Delta-G solvation = -161.444828 kcal Electronic energy + Delta-G solvation = -30211.297789 eV Core-core repulsion = 25455.071879 eV Total energy + Delta-G solvation = -4756.225909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.141 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -51.27716 -48.79258 -48.73364 -41.93653 -40.35614 -38.84238 -35.52421 -34.95057 -34.36902 -33.15008 -32.69043 -30.01255 -27.95806 -27.52057 -25.54169 -25.16190 -24.21465 -23.17661 -21.85745 -21.02404 -19.97956 -19.61757 -19.60112 -19.54852 -18.80636 -17.94445 -17.10984 -16.77648 -16.43519 -16.23728 -15.90950 -15.70295 -15.64903 -15.41748 -15.16501 -15.12390 -14.94274 -14.92274 -14.87407 -14.82755 -14.63980 -14.38212 -14.27638 -14.18294 -13.49207 -13.07067 -12.96795 -12.92982 -12.84502 -12.48669 -12.33285 -11.95417 -11.78396 -11.58838 -11.46499 -11.41416 -11.33007 -10.91610 -10.80510 -10.69821 -10.11857 -9.26847 -7.94933 -5.26561 -0.93891 -0.09204 1.38660 1.39314 1.39839 1.42797 1.45861 1.95902 2.46632 2.49303 2.51477 2.81271 2.93878 3.27127 3.36050 3.46287 3.53167 3.61615 3.72270 3.83716 3.88259 4.24207 4.28300 4.42305 4.47877 4.53774 4.60280 4.64729 4.71659 4.91651 4.96150 5.04166 5.13537 5.16996 5.24394 5.28846 5.44197 5.63008 5.77467 5.87703 6.22109 6.27692 6.52050 6.97897 7.13521 7.87965 8.05899 9.26200 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.011458 B = 0.003116 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.131358 B = 8983.813368 C =10662.206631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.104 4.104 3 C -0.135 4.135 4 C 0.174 3.826 5 H 0.057 0.943 6 C 0.115 3.885 7 N -0.696 5.696 8 C 0.562 3.438 9 O -0.557 6.557 10 C 0.093 3.907 11 C -0.109 4.109 12 C -0.014 4.014 13 C -0.221 4.221 14 C 0.525 3.475 15 F -0.175 7.175 16 F -0.171 7.171 17 F -0.173 7.173 18 C 0.145 3.855 19 N -0.475 5.475 20 N -0.746 5.746 21 C -0.202 4.202 22 H 0.069 0.931 23 C -0.055 4.055 24 N -0.981 5.981 25 Si 0.936 3.064 26 H -0.283 1.283 27 H -0.261 1.261 28 H -0.304 1.304 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.417 0.583 39 H 0.176 0.824 40 H 0.190 0.810 41 H 0.188 0.812 42 H 0.362 0.638 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -19.044 6.462 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.192 4.192 4 C 0.066 3.934 5 H 0.075 0.925 6 C -0.009 4.009 7 N -0.346 5.346 8 C 0.346 3.654 9 O -0.436 6.436 10 C -0.045 4.045 11 C -0.129 4.129 12 C -0.039 4.039 13 C -0.225 4.225 14 C 0.470 3.530 15 F -0.156 7.156 16 F -0.152 7.152 17 F -0.154 7.154 18 C -0.015 4.015 19 N -0.186 5.186 20 N -0.389 5.389 21 C -0.333 4.333 22 H 0.087 0.913 23 C -0.247 4.247 24 N -0.633 5.633 25 Si 0.766 3.234 26 H -0.210 1.210 27 H -0.186 1.186 28 H -0.232 1.232 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.254 0.746 39 H 0.193 0.807 40 H 0.208 0.792 41 H 0.205 0.795 42 H 0.195 0.805 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.014 -18.327 5.841 22.165 hybrid contribution 1.538 -0.954 0.283 1.832 sum -9.476 -19.281 6.125 22.339 Atomic orbital electron populations 1.21863 0.93641 1.02260 1.02176 1.21596 0.96198 0.96403 0.98321 1.21727 1.01607 0.95863 1.00022 1.20695 0.82697 0.92691 0.97334 0.92481 1.21860 0.98915 0.91628 0.88501 1.46004 1.47465 1.10661 1.30485 1.18061 0.81133 0.82155 0.84001 1.90757 1.37180 1.68429 1.47199 1.21505 0.94977 0.93411 0.94581 1.22312 0.99556 0.92966 0.98105 1.21772 0.89990 1.01979 0.90158 1.21356 1.04551 0.97528 0.99045 1.17847 0.76300 0.76698 0.82184 1.93207 1.73422 1.67399 1.81548 1.93247 1.60728 1.89316 1.71949 1.93247 1.76685 1.56429 1.89077 1.23035 0.95026 0.90683 0.92773 1.67785 1.07900 1.38992 1.03920 1.42820 1.02057 1.19543 1.74494 1.18929 0.89023 0.95912 1.29413 0.91301 1.25220 0.97313 0.99400 1.02750 1.69844 1.06839 1.32006 1.54567 0.85691 0.78279 0.80643 0.78763 1.20999 1.18574 1.23182 0.92596 0.91949 0.91585 0.91946 0.93420 0.92889 0.94287 0.88764 0.91466 0.74593 0.80681 0.79240 0.79532 0.80541 0.93746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.84 71.98 0.64 -2.63 16 2 C -0.10 -3.15 2.69 -10.79 -0.03 -3.18 16 3 C -0.13 -4.71 8.26 71.98 0.59 -4.11 16 4 C 0.17 5.83 2.18 44.99 0.10 5.92 16 5 H 0.06 2.02 8.08 -2.38 -0.02 2.00 16 6 C 0.11 3.34 4.73 86.38 0.41 3.74 16 7 N -0.70 -21.35 5.38 -465.66 -2.50 -23.85 16 8 C 0.56 16.62 7.81 86.88 0.68 17.30 16 9 O -0.56 -17.94 16.32 -3.77 -0.06 -18.00 16 10 C 0.09 2.35 6.75 41.91 0.28 2.63 16 11 C -0.11 -1.97 9.63 22.61 0.22 -1.76 16 12 C -0.01 -0.19 9.76 22.45 0.22 0.03 16 13 C -0.22 -3.69 5.39 -19.70 -0.11 -3.80 16 14 C 0.52 8.21 3.33 71.24 0.24 8.44 16 15 F -0.17 -3.03 16.00 44.97 0.72 -2.31 16 16 F -0.17 -2.64 17.24 44.97 0.78 -1.86 16 17 F -0.17 -2.80 17.24 44.97 0.78 -2.02 16 18 C 0.14 3.04 10.59 84.81 0.90 3.94 16 19 N -0.48 -12.55 9.54 -184.91 -1.76 -14.31 16 20 N -0.75 -31.42 4.24 -322.94 -1.37 -32.79 16 21 C -0.20 -10.46 8.05 84.03 0.68 -9.79 16 22 H 0.07 3.91 7.63 -2.91 -0.02 3.89 16 23 C -0.06 -3.11 5.50 84.86 0.47 -2.64 16 24 N -0.98 -60.74 13.97 21.65 0.30 -60.43 16 25 Si 0.94 44.80 27.74 68.60 1.90 46.71 16 26 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 27 H -0.26 -11.50 6.51 99.48 0.65 -10.85 16 28 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 29 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.35 6.54 -2.39 -0.02 1.33 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.05 2.06 6.01 -2.39 -0.01 2.04 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.09 2.41 6.71 -2.39 -0.02 2.40 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.42 13.85 7.47 -92.71 -0.69 13.16 16 39 H 0.18 2.65 7.64 -2.91 -0.02 2.63 16 40 H 0.19 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.19 3.38 7.16 -2.91 -0.02 3.35 16 42 H 0.36 15.37 5.66 -92.71 -0.52 14.85 16 43 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -65.99 370.03 3.86 -62.13 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: -0.20 Total: 32.63 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: 5.28 Total: 14.11 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -5.34 Total: -131.39 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.06 Total: -18.00 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 2.27 Total: -6.20 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.90 Total: 46.71 kcal Total: -65.99 3.86 -62.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496586540.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.312 kcal (2) G-P(sol) polarization free energy of solvation -65.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds