Wall clock time and date at job start Wed Apr 1 2020 04:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46969 * 2 1 4 4 N 1.46496 * 109.47239 * 120.00225 * 2 1 3 5 5 C 1.34772 * 120.00488 * 84.99920 * 4 2 1 6 6 O 1.21286 * 119.99547 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00421 * 179.97438 * 5 4 2 8 8 N 1.46896 * 109.46970 * 179.97438 * 7 5 4 9 9 C 1.47972 * 110.99876 * 170.00155 * 8 7 5 10 10 C 1.53935 * 86.18214 * 222.42042 * 9 8 7 11 11 O 1.42894 * 113.73226 * 269.25884 * 10 9 8 12 12 C 1.52996 * 113.73370 * 138.07783 * 10 9 8 13 13 N 1.46498 * 109.47059 * 184.99789 * 12 10 9 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 12 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 12 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00163 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46850 * 90.00589 * 22 20 18 24 24 H 1.48498 * 109.47329 * 210.00016 * 22 20 18 25 25 H 1.48499 * 109.47220 * 330.01003 * 22 20 18 26 26 C 1.47965 * 111.00100 * 70.64608 * 8 7 5 27 27 H 1.08997 * 109.46671 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46883 * 299.99541 * 1 2 3 29 29 H 1.08991 * 109.47297 * 59.99661 * 1 2 3 30 30 H 1.08996 * 109.46883 * 240.00459 * 2 1 3 31 31 H 1.08989 * 109.47027 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47022 * 300.00300 * 3 2 1 33 33 H 1.09005 * 109.46857 * 60.00208 * 3 2 1 34 34 H 0.97010 * 119.99856 * 265.00157 * 4 2 1 35 35 H 1.09004 * 109.46932 * 60.00651 * 7 5 4 36 36 H 1.08997 * 109.47149 * 300.00299 * 7 5 4 37 37 H 1.09001 * 113.75645 * 108.10148 * 9 8 7 38 38 H 1.09000 * 113.75871 * 336.73930 * 9 8 7 39 39 H 0.96702 * 114.00177 * 178.09891 * 11 10 9 40 40 H 1.09004 * 109.47066 * 65.00057 * 12 10 9 41 41 H 1.08994 * 109.46974 * 305.00204 * 12 10 9 42 42 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 43 43 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 44 44 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 45 45 H 0.96991 * 119.99795 * 179.97438 * 21 20 18 46 46 H 1.09004 * 113.75659 * 23.26332 * 26 8 7 47 47 H 1.08996 * 113.76175 * 251.89901 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -2.0322 1.1944 6 8 1.8591 -2.6677 0.2023 7 6 2.6501 -2.7426 2.4246 8 7 2.6988 -4.1884 2.1696 9 6 3.4072 -4.8955 3.2594 10 6 4.0866 -5.7146 2.1472 11 8 3.3827 -6.9089 1.8008 12 6 5.5804 -5.9491 2.3801 13 7 6.1551 -6.6294 1.2169 14 6 7.4675 -6.9355 1.1957 15 8 8.1717 -6.6522 2.1417 16 6 8.0601 -7.6297 -0.0035 17 16 9.8286 -7.9019 0.2697 18 6 10.2515 -8.7043 -1.2409 19 1 9.4929 -8.8821 -1.9888 20 6 11.5599 -9.1068 -1.4702 21 7 12.4846 -8.8897 -0.5590 22 14 12.0082 -9.9581 -3.0714 23 1 12.4074 -8.9414 -4.0776 24 1 13.1386 -10.8918 -2.8361 25 1 10.8350 -10.7175 -3.5737 26 6 3.7835 -4.5232 1.2206 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 2.2491 -0.1823 1.9895 35 1 1.9778 -2.5437 3.2593 36 1 3.6494 -2.3825 2.6691 37 1 2.7509 -5.4845 3.9001 38 1 4.0942 -4.2618 3.8202 39 1 3.7906 -7.4116 1.0824 40 1 5.7171 -6.5678 3.2671 41 1 6.0803 -4.9914 2.5246 42 1 5.5921 -6.8557 0.4602 43 1 7.5636 -8.5889 -0.1501 44 1 7.9200 -7.0092 -0.8886 45 1 13.3988 -9.1714 -0.7191 46 1 4.5807 -3.7807 1.1851 47 1 3.4280 -4.8148 0.2323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500790567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:36 Heat of formation + Delta-G solvation = -83.325920 kcal Electronic energy + Delta-G solvation = -27369.590133 eV Core-core repulsion = 23294.052405 eV Total energy + Delta-G solvation = -4075.537728 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18426 -39.84822 -38.94874 -36.53728 -35.87923 -34.15252 -32.44543 -32.34956 -30.80491 -29.48815 -27.71644 -26.97389 -26.60332 -25.48165 -23.64265 -21.60809 -20.78976 -20.56910 -20.27519 -18.18007 -17.61247 -17.14590 -16.80616 -16.49259 -16.31599 -15.92609 -15.37925 -15.30298 -14.95047 -14.81795 -14.60268 -14.56144 -13.97005 -13.80729 -13.58829 -13.39004 -13.24201 -13.05232 -12.83240 -12.80555 -12.61123 -12.58636 -12.35477 -11.95765 -11.84062 -11.77649 -11.44801 -11.10279 -11.06867 -11.04149 -10.76765 -10.25141 -10.08882 -9.83925 -9.54993 -9.51559 -9.19038 -9.09061 -9.01163 -8.27007 -6.52708 -6.23509 -3.94426 2.29419 2.61342 2.92221 3.00203 3.21606 3.26057 3.30076 3.34574 3.59635 3.75653 4.03251 4.18720 4.23643 4.29160 4.43637 4.54664 4.69100 4.72848 4.76156 4.77639 4.93370 5.07046 5.07633 5.11856 5.18216 5.19552 5.28565 5.33925 5.44184 5.44755 5.53322 5.60214 5.62161 5.71393 5.78059 5.84583 5.87754 6.07763 6.09830 6.38653 6.47569 7.08511 7.28149 7.53743 7.58367 7.88096 8.33552 8.49934 9.21996 10.83915 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.001823 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.743789 B =15359.480139 C =16344.155740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.136 3.864 3 C -0.161 4.161 4 N -0.732 5.732 5 C 0.515 3.485 6 O -0.517 6.517 7 C -0.004 4.004 8 N -0.447 5.447 9 C 0.020 3.980 10 C 0.095 3.905 11 O -0.524 6.524 12 C 0.103 3.897 13 N -0.739 5.739 14 C 0.534 3.466 15 O -0.515 6.515 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.011 4.011 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.379 0.621 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.395 0.605 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.269 0.731 46 H 0.077 0.923 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.392 18.665 5.788 31.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.032 3.968 3 C -0.218 4.218 4 N -0.386 5.386 5 C 0.300 3.700 6 O -0.391 6.391 7 C -0.136 4.136 8 N -0.170 5.170 9 C -0.109 4.109 10 C 0.052 3.948 11 O -0.329 6.329 12 C -0.022 4.022 13 N -0.396 5.396 14 C 0.321 3.679 15 O -0.388 6.388 16 C -0.305 4.305 17 S 0.167 5.833 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.140 4.140 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.124 0.876 38 H 0.106 0.894 39 H 0.228 0.772 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.230 0.770 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -24.321 18.699 7.016 31.471 hybrid contribution 0.459 -0.405 -2.276 2.357 sum -23.862 18.294 4.740 30.439 Atomic orbital electron populations 1.22182 0.95225 1.02747 1.02029 1.20929 0.94220 0.92797 0.88846 1.22080 1.01812 0.94969 1.02981 1.46128 1.68523 1.06991 1.16919 1.20468 0.77832 0.82065 0.89641 1.90733 1.48256 1.65614 1.34541 1.22663 1.02057 0.91711 0.97146 1.68570 1.37343 1.05438 1.05637 1.24147 0.96748 0.95400 0.94576 1.22877 0.89695 0.85911 0.96322 1.86567 1.52949 1.35538 1.57889 1.21888 0.91285 0.98799 0.90248 1.45912 1.10139 1.62992 1.20522 1.20331 0.80874 0.78081 0.88632 1.90710 1.59510 1.51986 1.36619 1.23540 1.06238 1.02564 0.98143 1.85395 0.94785 1.77084 1.26054 1.22867 0.97431 1.44581 1.03534 0.90871 1.24997 0.95278 0.95596 0.97714 1.70015 1.02235 1.44475 1.33560 0.86161 0.78232 0.79133 0.81936 1.20271 1.20737 1.19663 1.24681 0.93035 0.96806 0.99468 0.91979 0.92547 0.91629 0.89430 0.91899 0.90848 0.92061 0.76764 0.87478 0.91040 0.87619 0.89411 0.77229 0.90275 0.90554 0.77048 0.89043 0.89119 0.92166 0.90532 0.88006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 9.48 37.16 0.35 -0.63 16 2 C 0.14 0.84 3.18 -67.93 -0.22 0.62 16 3 C -0.16 -0.61 9.38 37.16 0.35 -0.26 16 4 N -0.73 -4.34 5.08 -53.80 -0.27 -4.62 16 5 C 0.51 4.60 7.60 -10.99 -0.08 4.52 16 6 O -0.52 -6.87 15.21 5.55 0.08 -6.79 16 7 C 0.00 -0.03 5.30 -4.98 -0.03 -0.05 16 8 N -0.45 -4.23 5.95 -239.59 -1.43 -5.66 16 9 C 0.02 0.16 7.38 -2.76 -0.02 0.14 16 10 C 0.09 0.88 1.52 -89.69 -0.14 0.74 16 11 O -0.52 -5.42 13.50 -35.23 -0.48 -5.90 16 12 C 0.10 1.11 5.28 -4.04 -0.02 1.09 16 13 N -0.74 -9.11 5.34 -60.30 -0.32 -9.43 16 14 C 0.53 9.55 7.85 -10.98 -0.09 9.46 16 15 O -0.51 -11.32 15.86 5.55 0.09 -11.23 16 16 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.02 13.22 55.49 0.73 -25.28 16 22 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 C -0.01 -0.11 6.16 -2.76 -0.02 -0.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.09 0.73 7.58 -51.93 -0.39 0.34 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.40 1.21 8.60 -40.82 -0.35 0.86 16 35 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.36 7.69 -51.93 -0.40 -0.04 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 0.50 7.75 -51.93 -0.40 0.10 16 39 H 0.38 2.89 7.61 45.56 0.35 3.23 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.08 0.84 8.04 -51.93 -0.42 0.42 16 42 H 0.40 3.71 7.31 -40.82 -0.30 3.42 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.08 0.69 7.67 -51.93 -0.40 0.30 16 47 H 0.10 1.14 8.09 -51.93 -0.42 0.72 16 LS Contribution 405.90 15.07 6.12 6.12 Total: -1.00 -38.23 405.90 -9.12 -47.35 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.93 Total: 3.11 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 0.51 Total: -0.16 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: -1.29 Total: -45.00 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.30 Total: -23.91 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.23 -9.12 -47.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500790567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.972 kcal (2) G-P(sol) polarization free energy of solvation -38.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds