Wall clock time and date at job start Wed Apr 1 2020 04:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53005 * 109.46969 * 2 1 4 4 N 1.46496 * 109.47239 * 120.00225 * 2 1 3 5 5 C 1.34772 * 120.00488 * 84.99920 * 4 2 1 6 6 O 1.21286 * 119.99547 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00421 * 179.97438 * 5 4 2 8 8 N 1.46896 * 109.46970 * 179.97438 * 7 5 4 9 9 C 1.47972 * 110.99876 * 170.00155 * 8 7 5 10 10 C 1.53935 * 86.18214 * 222.42042 * 9 8 7 11 11 O 1.42894 * 113.73226 * 269.25884 * 10 9 8 12 12 C 1.52996 * 113.73370 * 138.07783 * 10 9 8 13 13 N 1.46498 * 109.47059 * 184.99789 * 12 10 9 14 14 C 1.34777 * 119.99828 * 179.72339 * 13 12 10 15 15 O 1.21283 * 120.00222 * 0.28168 * 14 13 12 16 16 C 1.50703 * 120.00290 * 180.27728 * 14 13 12 17 17 S 1.81000 * 109.47389 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99715 * 179.97438 * 17 16 14 19 19 H 1.08001 * 120.00516 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99710 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00163 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00011 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46850 * 90.00589 * 22 20 18 24 24 H 1.48498 * 109.47329 * 210.00016 * 22 20 18 25 25 H 1.48499 * 109.47220 * 330.01003 * 22 20 18 26 26 C 1.47965 * 111.00100 * 70.64608 * 8 7 5 27 27 H 1.08997 * 109.46671 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46883 * 299.99541 * 1 2 3 29 29 H 1.08991 * 109.47297 * 59.99661 * 1 2 3 30 30 H 1.08996 * 109.46883 * 240.00459 * 2 1 3 31 31 H 1.08989 * 109.47027 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47022 * 300.00300 * 3 2 1 33 33 H 1.09005 * 109.46857 * 60.00208 * 3 2 1 34 34 H 0.97010 * 119.99856 * 265.00157 * 4 2 1 35 35 H 1.09004 * 109.46932 * 60.00651 * 7 5 4 36 36 H 1.08997 * 109.47149 * 300.00299 * 7 5 4 37 37 H 1.09001 * 113.75645 * 108.10148 * 9 8 7 38 38 H 1.09000 * 113.75871 * 336.73930 * 9 8 7 39 39 H 0.96702 * 114.00177 * 178.09891 * 11 10 9 40 40 H 1.09004 * 109.47066 * 65.00057 * 12 10 9 41 41 H 1.08994 * 109.46974 * 305.00204 * 12 10 9 42 42 H 0.97001 * 120.00384 * 0.02562 * 13 12 10 43 43 H 1.08998 * 109.46954 * 300.00581 * 16 14 13 44 44 H 1.09002 * 109.46946 * 59.99717 * 16 14 13 45 45 H 0.96991 * 119.99795 * 179.97438 * 21 20 18 46 46 H 1.09004 * 113.75659 * 23.26332 * 26 8 7 47 47 H 1.08996 * 113.76175 * 251.89901 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1472 -2.0322 1.1944 6 8 1.8591 -2.6677 0.2023 7 6 2.6501 -2.7426 2.4246 8 7 2.6988 -4.1884 2.1696 9 6 3.4072 -4.8955 3.2594 10 6 4.0866 -5.7146 2.1472 11 8 3.3827 -6.9089 1.8008 12 6 5.5804 -5.9491 2.3801 13 7 6.1551 -6.6294 1.2169 14 6 7.4675 -6.9355 1.1957 15 8 8.1717 -6.6522 2.1417 16 6 8.0601 -7.6297 -0.0035 17 16 9.8286 -7.9019 0.2697 18 6 10.2515 -8.7043 -1.2409 19 1 9.4929 -8.8821 -1.9888 20 6 11.5599 -9.1068 -1.4702 21 7 12.4846 -8.8897 -0.5590 22 14 12.0082 -9.9581 -3.0714 23 1 12.4074 -8.9414 -4.0776 24 1 13.1386 -10.8918 -2.8361 25 1 10.8350 -10.7175 -3.5737 26 6 3.7835 -4.5232 1.2206 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 2.2491 -0.1823 1.9895 35 1 1.9778 -2.5437 3.2593 36 1 3.6494 -2.3825 2.6691 37 1 2.7509 -5.4845 3.9001 38 1 4.0942 -4.2618 3.8202 39 1 3.7906 -7.4116 1.0824 40 1 5.7171 -6.5678 3.2671 41 1 6.0803 -4.9914 2.5246 42 1 5.5921 -6.8557 0.4602 43 1 7.5636 -8.5889 -0.1501 44 1 7.9200 -7.0092 -0.8886 45 1 13.3988 -9.1714 -0.7191 46 1 4.5807 -3.7807 1.1851 47 1 3.4280 -4.8148 0.2323 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500790567.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:36 Heat of formation + Delta-G solvation = -117.819285 kcal Electronic energy + Delta-G solvation = -27371.085877 eV Core-core repulsion = 23294.052405 eV Total energy + Delta-G solvation = -4077.033472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.91658 -40.71791 -40.11730 -37.21699 -36.63623 -35.31909 -34.58307 -32.95846 -31.80597 -30.59598 -28.12416 -28.02687 -27.53287 -27.28331 -24.40515 -22.15068 -21.88263 -21.41303 -21.01235 -19.95340 -18.50717 -18.15846 -17.72314 -17.41569 -17.10408 -16.87964 -16.74781 -16.61668 -16.18231 -15.93441 -15.56379 -15.35963 -15.16283 -14.71670 -14.65567 -14.46671 -14.21238 -13.93143 -13.77688 -13.70367 -13.26112 -13.19721 -13.16695 -13.08340 -12.98384 -12.88995 -12.63661 -12.54451 -12.30677 -11.93493 -11.88521 -11.70092 -11.14420 -11.02399 -10.99821 -10.80180 -10.28361 -10.24320 -10.12719 -9.78591 -8.66494 -8.34977 -6.12668 1.25862 1.42263 1.46117 1.56752 1.57070 1.64749 2.07162 2.18533 2.27480 2.69652 2.99292 3.07533 3.24110 3.32438 3.55495 3.72123 3.89488 3.95827 4.03510 4.11009 4.21191 4.27639 4.29199 4.30427 4.38606 4.45629 4.51293 4.62012 4.65602 4.71592 4.73855 4.78686 4.90819 4.92540 5.01351 5.20795 5.24531 5.29137 5.29967 5.42191 5.55976 5.84270 6.19795 6.35921 6.59579 6.63072 7.06684 7.16667 7.30555 8.74130 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.014988 B = 0.001823 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.743789 B =15359.480139 C =16344.155740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.133 3.867 3 C -0.152 4.152 4 N -0.717 5.717 5 C 0.508 3.492 6 O -0.570 6.570 7 C -0.002 4.002 8 N -0.472 5.472 9 C 0.027 3.973 10 C 0.102 3.898 11 O -0.539 6.539 12 C 0.106 3.894 13 N -0.713 5.713 14 C 0.539 3.461 15 O -0.561 6.561 16 C -0.132 4.132 17 S -0.149 6.149 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 0.997 3.003 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.259 1.259 26 C -0.007 4.007 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.415 0.585 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.115 0.885 39 H 0.388 0.612 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.412 0.588 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.082 0.918 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.819 19.739 5.634 32.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.028 3.972 3 C -0.210 4.210 4 N -0.371 5.371 5 C 0.295 3.705 6 O -0.448 6.448 7 C -0.133 4.133 8 N -0.195 5.195 9 C -0.102 4.102 10 C 0.059 3.941 11 O -0.346 6.346 12 C -0.018 4.018 13 N -0.369 5.369 14 C 0.325 3.675 15 O -0.439 6.439 16 C -0.283 4.283 17 S 0.079 5.921 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.183 1.183 26 C -0.136 4.136 27 H 0.051 0.949 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.252 0.748 35 H 0.149 0.851 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.132 0.868 39 H 0.238 0.762 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.250 0.750 43 H 0.130 0.870 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -25.806 19.815 6.872 33.254 hybrid contribution 0.741 -0.652 -2.194 2.406 sum -25.065 19.163 4.678 31.896 Atomic orbital electron populations 1.22129 0.95067 1.01165 1.03274 1.20955 0.94351 0.93968 0.87918 1.22019 1.01671 0.93135 1.04156 1.46046 1.67244 1.06332 1.17513 1.20944 0.77163 0.82755 0.89649 1.90714 1.50785 1.66821 1.36499 1.22757 1.03898 0.90089 0.96602 1.68508 1.37589 1.07320 1.06097 1.24234 0.96816 0.95132 0.93968 1.22853 0.88395 0.85596 0.97208 1.86559 1.53535 1.36041 1.58436 1.22002 0.92249 0.98535 0.89037 1.45613 1.08330 1.61330 1.21606 1.20005 0.82238 0.77900 0.87399 1.90701 1.61052 1.54169 1.37950 1.23389 1.00775 1.04344 0.99812 1.85541 1.01855 1.77559 1.27192 1.23211 0.98099 1.44508 1.03666 0.89922 1.26111 0.95130 0.96207 1.01665 1.70175 1.02717 1.45804 1.35990 0.84969 0.78228 0.77994 0.76891 1.19348 1.20298 1.18266 1.24574 0.93328 0.97096 0.98610 0.94871 0.91047 0.90660 0.92258 0.92002 0.90209 0.90359 0.74767 0.85129 0.88528 0.87622 0.86762 0.76155 0.90901 0.90083 0.75045 0.87038 0.87182 0.91991 0.89955 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.48 71.98 0.68 -1.13 16 2 C 0.13 1.54 3.18 45.00 0.14 1.69 16 3 C -0.15 -0.87 9.38 71.98 0.68 -0.19 16 4 N -0.72 -7.53 5.08 -442.53 -2.25 -9.78 16 5 C 0.51 8.67 7.60 87.66 0.67 9.33 16 6 O -0.57 -15.53 15.21 -3.05 -0.05 -15.57 16 7 C 0.00 -0.03 5.30 85.56 0.45 0.43 16 8 N -0.47 -8.18 5.95 -915.11 -5.44 -13.62 16 9 C 0.03 0.36 7.38 86.40 0.64 1.00 16 10 C 0.10 1.72 1.52 -10.15 -0.02 1.71 16 11 O -0.54 -10.41 13.50 -148.98 -2.01 -12.42 16 12 C 0.11 2.12 5.28 86.38 0.46 2.58 16 13 N -0.71 -16.43 5.34 -463.07 -2.47 -18.90 16 14 C 0.54 18.82 7.85 87.66 0.69 19.51 16 15 O -0.56 -24.85 15.86 -3.04 -0.05 -24.89 16 16 C -0.13 -5.05 6.16 71.24 0.44 -4.62 16 17 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 18 C -0.55 -31.00 9.50 67.96 0.65 -30.36 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 20 C 0.01 0.78 5.49 84.86 0.47 1.24 16 21 N -0.91 -55.61 13.22 21.65 0.29 -55.33 16 22 Si 1.00 43.47 29.55 68.60 2.03 45.50 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 26 C -0.01 -0.13 6.16 86.41 0.53 0.41 16 27 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.06 1.04 7.58 -2.39 -0.02 1.02 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.08 0.20 8.14 -2.38 -0.02 0.19 16 34 H 0.42 1.48 8.60 -92.70 -0.80 0.68 16 35 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.10 0.64 7.69 -2.39 -0.02 0.62 16 37 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.11 0.91 7.75 -2.39 -0.02 0.89 16 39 H 0.39 5.35 7.61 -74.06 -0.56 4.79 16 40 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 41 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 42 H 0.41 6.89 7.31 -92.71 -0.68 6.21 16 43 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 44 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 45 H 0.27 15.37 8.31 -92.72 -0.77 14.60 16 46 H 0.08 1.36 7.67 -2.38 -0.02 1.35 16 47 H 0.08 1.81 8.09 -2.39 -0.02 1.79 16 Total: -1.00 -86.50 405.90 -5.68 -92.18 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -1.04 Total: 20.52 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 6.47 Total: 1.60 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -9.87 Total: -97.63 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -2.11 Total: -52.88 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -86.50 -5.68 -92.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500790567.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.634 kcal (2) G-P(sol) polarization free energy of solvation -86.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds