Wall clock time and date at job start Wed Apr 1 2020 03:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46869 * 2 1 4 4 N 1.46500 * 109.46667 * 119.99604 * 2 1 3 5 5 S 1.65606 * 120.00165 * 51.69126 * 4 2 1 6 6 C 1.81405 * 104.44673 * 62.27584 * 5 4 2 7 7 O 1.42095 * 104.27708 * 178.34420 * 5 4 2 8 8 O 1.42097 * 104.27729 * 306.20572 * 5 4 2 9 9 C 1.50696 * 109.47195 * 239.99698 * 2 1 3 10 10 O 1.21281 * 120.00098 * 24.99777 * 9 2 1 11 11 N 1.34781 * 119.99578 * 205.00070 * 9 2 1 12 12 C 1.46507 * 119.99461 * 179.97438 * 11 9 2 13 13 C 1.53003 * 109.46898 * 180.02562 * 12 11 9 14 14 H 1.09005 * 115.51555 * 330.58603 * 13 12 11 15 15 C 1.52993 * 117.44579 * 185.16933 * 13 12 11 16 16 H 1.09005 * 119.53389 * 4.11630 * 15 13 12 17 17 C 1.54384 * 118.12623 * 160.80819 * 15 13 12 18 18 N 1.48010 * 104.64859 * 87.22012 * 17 15 13 19 19 C 1.36937 * 127.84295 * 140.40589 * 18 17 15 20 20 H 1.07999 * 120.00065 * 192.44697 * 19 18 17 21 21 C 1.38807 * 120.00018 * 12.44929 * 19 18 17 22 22 N 1.31622 * 120.00172 * 11.15033 * 21 19 18 23 23 Si 1.86800 * 120.00074 * 191.15439 * 21 19 18 24 24 H 1.48501 * 109.47299 * 94.97774 * 23 21 19 25 25 H 1.48505 * 109.47280 * 214.97832 * 23 21 19 26 26 H 1.48497 * 109.47098 * 334.97771 * 23 21 19 27 27 C 1.48147 * 104.31838 * 320.45780 * 18 17 15 28 28 C 1.52994 * 117.44302 * 115.99968 * 13 12 11 29 29 H 1.09007 * 119.53973 * 355.87981 * 28 13 12 30 30 H 1.08996 * 109.46670 * 51.62890 * 1 2 3 31 31 H 1.09004 * 109.46745 * 171.62708 * 1 2 3 32 32 H 1.08997 * 109.47306 * 291.62967 * 1 2 3 33 33 H 1.08994 * 109.47768 * 60.00003 * 3 2 1 34 34 H 1.09007 * 109.47123 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47527 * 299.99603 * 3 2 1 36 36 H 0.97006 * 120.00464 * 231.68749 * 4 2 1 37 37 H 1.08998 * 109.47239 * 53.28333 * 6 5 4 38 38 H 1.09003 * 109.46865 * 173.28345 * 6 5 4 39 39 H 1.09000 * 109.46639 * 293.28044 * 6 5 4 40 40 H 0.96995 * 119.99892 * 0.02562 * 11 9 2 41 41 H 1.08998 * 109.47231 * 299.99915 * 12 11 9 42 42 H 1.08993 * 109.46992 * 60.00532 * 12 11 9 43 43 H 1.08996 * 110.40699 * 205.97723 * 17 15 13 44 44 H 1.08998 * 110.40836 * 328.40673 * 17 15 13 45 45 H 0.97000 * 120.00304 * 180.02562 * 22 21 19 46 46 H 1.08996 * 110.40692 * 280.75353 * 27 18 17 47 47 H 1.09000 * 110.40472 * 158.31999 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 16 1.4560 -2.2036 1.5664 6 6 1.9781 -3.2350 0.1684 7 8 2.1660 -2.5630 2.7436 8 8 0.0425 -2.0589 1.5787 9 6 2.0324 -0.7104 -1.2304 10 8 1.3371 -0.7706 -2.2222 11 7 3.2544 -1.2790 -1.2285 12 6 3.7425 -1.9702 -2.4245 13 6 5.1449 -2.5211 -2.1584 14 1 5.7428 -1.9573 -1.4422 15 6 5.8797 -3.1749 -3.3303 16 1 5.4236 -3.1704 -4.3203 17 6 7.4132 -3.3260 -3.2346 18 7 7.6194 -4.6148 -2.5366 19 6 8.5672 -5.5685 -2.7961 20 1 8.4851 -6.5476 -2.3477 21 6 9.6335 -5.2769 -3.6356 22 7 9.8587 -4.0342 -4.0061 23 14 10.7490 -6.6482 -4.2395 24 1 10.2860 -7.1123 -5.5721 25 1 12.1411 -6.1426 -4.3476 26 1 10.7066 -7.7800 -3.2791 27 6 6.5670 -4.6395 -1.4942 28 6 5.3220 -4.0405 -2.1833 29 1 4.4504 -4.6811 -2.3187 30 1 -0.3632 0.6379 -0.8057 31 1 -0.3633 -1.0168 -0.1497 32 1 -0.3634 0.3788 0.9553 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.6710 -0.2616 1.7716 37 1 3.0507 -3.1197 0.0124 38 1 1.7523 -4.2795 0.3832 39 1 1.4449 -2.9254 -0.7305 40 1 3.8103 -1.2312 -0.4350 41 1 3.0700 -2.7923 -2.6689 42 1 3.7791 -1.2702 -3.2591 43 1 7.8547 -3.3591 -4.2305 44 1 7.8404 -2.5074 -2.6555 45 1 10.6036 -3.8304 -4.5930 46 1 6.8615 -4.0268 -0.6422 47 1 6.3701 -5.6636 -1.1771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506817376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:28 Heat of formation + Delta-G solvation = -34.904854 kcal Electronic energy + Delta-G solvation = -29579.948731 eV Core-core repulsion = 25506.510699 eV Total energy + Delta-G solvation = -4073.438033 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.74986 -38.99068 -37.52591 -36.71136 -36.22777 -35.33541 -33.46104 -31.05611 -30.95256 -29.69558 -27.91440 -27.56120 -27.21185 -25.21758 -23.22622 -21.30392 -20.77882 -20.16543 -19.47339 -19.34317 -18.16437 -18.06335 -16.90410 -16.73845 -16.25597 -16.00492 -15.65085 -15.07955 -14.87090 -14.56821 -14.17044 -13.91922 -13.83950 -13.57435 -13.29486 -13.24969 -12.95947 -12.86868 -12.76729 -12.67017 -12.49233 -12.32462 -12.16527 -12.07912 -11.96985 -11.44248 -11.35151 -11.19652 -11.17745 -10.91781 -10.89743 -10.75700 -10.40564 -10.18769 -9.82623 -9.77373 -9.55408 -9.25234 -9.12203 -8.71724 -6.97359 -5.86067 -3.19363 -0.09660 1.97708 2.39887 2.74666 3.34079 3.39895 3.41048 3.41718 3.86889 3.96900 4.13892 4.28086 4.40521 4.48598 4.50766 4.63120 4.73165 4.83707 5.14983 5.19150 5.23929 5.25861 5.32185 5.39213 5.46743 5.50355 5.59378 5.63413 5.69801 5.72970 5.77971 5.83978 6.01784 6.11758 6.12567 6.42618 6.43868 6.53976 6.59243 6.80037 7.11724 7.26788 7.45311 7.65318 7.79947 8.13673 9.04422 9.67354 10.42192 11.27714 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.002527 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.988257 B =11077.568585 C =11798.827269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 C -0.146 4.146 4 N -1.113 6.113 5 S 2.606 3.394 6 C -0.676 4.676 7 O -0.955 6.955 8 O -0.950 6.950 9 C 0.490 3.510 10 O -0.523 6.523 11 N -0.722 5.722 12 C 0.149 3.851 13 C -0.156 4.156 14 H 0.104 0.896 15 C -0.158 4.158 16 H 0.104 0.896 17 C 0.181 3.819 18 N -0.594 5.594 19 C -0.228 4.228 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.153 3.847 28 C -0.173 4.173 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.423 0.577 37 H 0.140 0.860 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.402 0.598 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.022 0.978 45 H 0.255 0.745 46 H 0.025 0.975 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.499 10.297 9.029 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.069 3.931 3 C -0.204 4.204 4 N -0.874 5.874 5 S 2.699 3.301 6 C -0.826 4.826 7 O -0.945 6.945 8 O -0.940 6.940 9 C 0.274 3.726 10 O -0.397 6.397 11 N -0.375 5.375 12 C 0.026 3.974 13 C -0.175 4.175 14 H 0.122 0.878 15 C -0.178 4.178 16 H 0.122 0.878 17 C 0.055 3.945 18 N -0.317 5.317 19 C -0.356 4.356 20 H 0.096 0.904 21 C -0.203 4.203 22 N -0.562 5.562 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.027 3.973 28 C -0.193 4.193 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.258 0.742 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.146 0.854 40 H 0.238 0.762 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.040 0.960 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.340 9.828 8.815 22.597 hybrid contribution 1.580 -0.564 -0.465 1.741 sum -16.759 9.263 8.350 20.891 Atomic orbital electron populations 1.22362 0.90116 1.05395 1.03792 1.20504 0.96639 0.94605 0.81357 1.22006 1.02124 0.91908 1.04387 1.55873 1.60190 1.35431 1.35858 1.05004 0.74981 0.74224 0.75930 1.30824 1.14128 1.16668 1.21023 1.93640 1.74620 1.82540 1.43706 1.93638 1.29304 1.84460 1.86613 1.21106 0.81944 0.79335 0.90252 1.90763 1.56384 1.58173 1.34430 1.46329 1.17565 1.56015 1.17581 1.20997 0.93279 0.96314 0.86822 1.22566 0.95492 0.95527 1.03881 0.87784 1.24218 0.99120 1.02093 0.92394 0.87826 1.21102 0.86191 0.87241 0.99961 1.45190 1.33721 1.19397 1.33419 1.19031 0.99970 0.91304 1.25281 0.90405 1.24845 0.97558 0.96476 1.01425 1.69890 1.31225 1.16320 1.38784 0.86087 0.79770 0.80931 0.78898 1.21513 1.21668 1.20493 1.21151 0.87078 0.97764 0.91350 1.24009 1.00467 0.90635 1.04171 0.87852 0.90358 0.89972 0.90207 0.90125 0.91089 0.90090 0.74173 0.84194 0.84834 0.85372 0.76199 0.91016 0.90646 0.88719 0.95980 0.93531 0.95777 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 6.66 37.16 0.25 -1.09 16 2 C 0.16 1.18 1.08 -132.97 -0.14 1.03 16 3 C -0.15 -0.76 8.57 37.15 0.32 -0.44 16 4 N -1.11 -6.90 4.71 -0.40 0.00 -6.90 16 5 S 2.61 22.25 5.99 -107.50 -0.64 21.60 16 6 C -0.68 -5.18 8.94 101.05 0.90 -4.28 16 7 O -0.95 -11.09 18.08 -57.54 -1.04 -12.13 16 8 O -0.95 -10.67 14.65 -57.54 -0.84 -11.52 16 9 C 0.49 4.73 4.13 -10.99 -0.05 4.69 16 10 O -0.52 -6.88 16.25 5.56 0.09 -6.79 16 11 N -0.72 -6.31 3.06 -60.29 -0.18 -6.49 16 12 C 0.15 1.64 5.81 -4.04 -0.02 1.62 16 13 C -0.16 -2.06 5.40 -90.62 -0.49 -2.55 16 14 H 0.10 1.36 8.04 -51.93 -0.42 0.94 16 15 C -0.16 -2.73 6.84 -89.30 -0.61 -3.34 16 16 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 17 C 0.18 4.11 5.76 -2.49 -0.01 4.10 16 18 N -0.59 -14.58 3.38 -168.98 -0.57 -15.15 16 19 C -0.23 -6.18 10.36 -15.06 -0.16 -6.34 16 20 H 0.08 2.05 7.85 -52.49 -0.41 1.63 16 21 C -0.01 -0.17 5.39 -17.43 -0.09 -0.26 16 22 N -0.92 -26.11 10.79 55.49 0.60 -25.51 16 23 Si 0.91 21.51 29.57 -169.99 -5.03 16.49 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.15 2.99 7.04 -2.41 -0.02 2.97 16 28 C -0.17 -2.74 6.74 -89.30 -0.60 -3.34 16 29 H 0.10 1.49 8.12 -51.93 -0.42 1.07 16 30 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 31 H 0.08 0.82 6.25 -51.93 -0.32 0.50 16 32 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.42 1.66 8.58 -34.47 -0.30 1.36 16 37 H 0.14 1.02 6.32 -51.93 -0.33 0.69 16 38 H 0.13 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.13 1.08 6.40 -51.92 -0.33 0.74 16 40 H 0.40 2.70 7.29 -40.82 -0.30 2.40 16 41 H 0.07 0.82 7.93 -51.93 -0.41 0.41 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.09 2.45 6.35 -51.93 -0.33 2.12 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -35.21 381.40 -9.95 -45.16 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -7.35 Total: 2.73 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -0.73 Total: -7.23 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.16 Total: -54.06 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -1.79 Total: -30.44 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.49 kcal Atomic # 16 Polarization: 22.25 SS G_CDS: -0.64 Total: 21.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.21 -9.95 -45.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506817376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.256 kcal (2) G-P(sol) polarization free energy of solvation -35.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds