Wall clock time and date at job start Wed Apr 1 2020 03:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46869 * 2 1 4 4 N 1.46500 * 109.46667 * 119.99604 * 2 1 3 5 5 S 1.65606 * 120.00165 * 51.69126 * 4 2 1 6 6 C 1.81405 * 104.44673 * 62.27584 * 5 4 2 7 7 O 1.42095 * 104.27708 * 178.34420 * 5 4 2 8 8 O 1.42097 * 104.27729 * 306.20572 * 5 4 2 9 9 C 1.50696 * 109.47195 * 239.99698 * 2 1 3 10 10 O 1.21281 * 120.00098 * 24.99777 * 9 2 1 11 11 N 1.34781 * 119.99578 * 205.00070 * 9 2 1 12 12 C 1.46507 * 119.99461 * 179.97438 * 11 9 2 13 13 C 1.53003 * 109.46898 * 180.02562 * 12 11 9 14 14 H 1.09005 * 115.51555 * 330.58603 * 13 12 11 15 15 C 1.52993 * 117.44579 * 185.16933 * 13 12 11 16 16 H 1.09005 * 119.53389 * 4.11630 * 15 13 12 17 17 C 1.54384 * 118.12623 * 160.80819 * 15 13 12 18 18 N 1.48010 * 104.64859 * 87.22012 * 17 15 13 19 19 C 1.36937 * 127.84295 * 140.40589 * 18 17 15 20 20 H 1.07999 * 120.00065 * 192.44697 * 19 18 17 21 21 C 1.38807 * 120.00018 * 12.44929 * 19 18 17 22 22 N 1.31622 * 120.00172 * 11.15033 * 21 19 18 23 23 Si 1.86800 * 120.00074 * 191.15439 * 21 19 18 24 24 H 1.48501 * 109.47299 * 94.97774 * 23 21 19 25 25 H 1.48505 * 109.47280 * 214.97832 * 23 21 19 26 26 H 1.48497 * 109.47098 * 334.97771 * 23 21 19 27 27 C 1.48147 * 104.31838 * 320.45780 * 18 17 15 28 28 C 1.52994 * 117.44302 * 115.99968 * 13 12 11 29 29 H 1.09007 * 119.53973 * 355.87981 * 28 13 12 30 30 H 1.08996 * 109.46670 * 51.62890 * 1 2 3 31 31 H 1.09004 * 109.46745 * 171.62708 * 1 2 3 32 32 H 1.08997 * 109.47306 * 291.62967 * 1 2 3 33 33 H 1.08994 * 109.47768 * 60.00003 * 3 2 1 34 34 H 1.09007 * 109.47123 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47527 * 299.99603 * 3 2 1 36 36 H 0.97006 * 120.00464 * 231.68749 * 4 2 1 37 37 H 1.08998 * 109.47239 * 53.28333 * 6 5 4 38 38 H 1.09003 * 109.46865 * 173.28345 * 6 5 4 39 39 H 1.09000 * 109.46639 * 293.28044 * 6 5 4 40 40 H 0.96995 * 119.99892 * 0.02562 * 11 9 2 41 41 H 1.08998 * 109.47231 * 299.99915 * 12 11 9 42 42 H 1.08993 * 109.46992 * 60.00532 * 12 11 9 43 43 H 1.08996 * 110.40699 * 205.97723 * 17 15 13 44 44 H 1.08998 * 110.40836 * 328.40673 * 17 15 13 45 45 H 0.97000 * 120.00304 * 180.02562 * 22 21 19 46 46 H 1.08996 * 110.40692 * 280.75353 * 27 18 17 47 47 H 1.09000 * 110.40472 * 158.31999 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 16 1.4560 -2.2036 1.5664 6 6 1.9781 -3.2350 0.1684 7 8 2.1660 -2.5630 2.7436 8 8 0.0425 -2.0589 1.5787 9 6 2.0324 -0.7104 -1.2304 10 8 1.3371 -0.7706 -2.2222 11 7 3.2544 -1.2790 -1.2285 12 6 3.7425 -1.9702 -2.4245 13 6 5.1449 -2.5211 -2.1584 14 1 5.7428 -1.9573 -1.4422 15 6 5.8797 -3.1749 -3.3303 16 1 5.4236 -3.1704 -4.3203 17 6 7.4132 -3.3260 -3.2346 18 7 7.6194 -4.6148 -2.5366 19 6 8.5672 -5.5685 -2.7961 20 1 8.4851 -6.5476 -2.3477 21 6 9.6335 -5.2769 -3.6356 22 7 9.8587 -4.0342 -4.0061 23 14 10.7490 -6.6482 -4.2395 24 1 10.2860 -7.1123 -5.5721 25 1 12.1411 -6.1426 -4.3476 26 1 10.7066 -7.7800 -3.2791 27 6 6.5670 -4.6395 -1.4942 28 6 5.3220 -4.0405 -2.1833 29 1 4.4504 -4.6811 -2.3187 30 1 -0.3632 0.6379 -0.8057 31 1 -0.3633 -1.0168 -0.1497 32 1 -0.3634 0.3788 0.9553 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 2.6710 -0.2616 1.7716 37 1 3.0507 -3.1197 0.0124 38 1 1.7523 -4.2795 0.3832 39 1 1.4449 -2.9254 -0.7305 40 1 3.8103 -1.2312 -0.4350 41 1 3.0700 -2.7923 -2.6689 42 1 3.7791 -1.2702 -3.2591 43 1 7.8547 -3.3591 -4.2305 44 1 7.8404 -2.5074 -2.6555 45 1 10.6036 -3.8304 -4.5930 46 1 6.8615 -4.0268 -0.6422 47 1 6.3701 -5.6636 -1.1771 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506817376.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:35:27 Heat of formation + Delta-G solvation = -61.647148 kcal Electronic energy + Delta-G solvation = -29581.108364 eV Core-core repulsion = 25506.510699 eV Total energy + Delta-G solvation = -4074.597666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.54407 -40.37690 -38.31193 -37.41814 -37.00051 -36.47437 -35.03885 -32.71474 -31.61662 -30.33882 -29.11420 -28.81759 -28.24159 -26.80686 -24.11534 -22.75743 -21.85154 -21.10349 -20.83822 -20.22545 -18.95105 -18.79352 -18.71651 -17.47810 -17.14841 -16.80829 -16.69525 -16.43546 -16.05023 -15.59850 -15.33503 -15.13568 -14.65882 -14.56966 -14.45922 -14.31305 -13.99470 -13.90620 -13.63410 -13.35225 -13.28345 -13.20777 -13.19376 -12.99226 -12.86866 -12.82233 -12.73635 -12.66611 -12.30192 -12.15042 -11.97191 -11.93629 -11.83512 -11.74660 -11.60041 -10.97391 -10.69952 -10.67213 -10.33927 -10.06775 -8.92956 -7.91839 -5.26081 -0.77114 1.26797 1.46042 1.47379 1.56363 1.73121 1.94923 2.47091 2.71544 2.75185 3.19623 3.25198 3.47169 3.62003 3.69892 3.71825 3.85082 3.90640 3.95491 4.03277 4.20060 4.25415 4.28447 4.43167 4.57185 4.65032 4.75596 4.76864 4.83233 4.84730 4.90066 4.95188 5.03997 5.08908 5.17638 5.24580 5.34577 5.37557 5.43328 5.45773 5.54307 5.68925 6.03544 6.18587 6.39563 7.01754 7.06216 7.69395 8.45715 9.21156 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.002527 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.988257 B =11077.568585 C =11798.827269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 C -0.145 4.145 4 N -1.100 6.100 5 S 2.621 3.379 6 C -0.673 4.673 7 O -0.985 6.985 8 O -0.980 6.980 9 C 0.494 3.506 10 O -0.557 6.557 11 N -0.713 5.713 12 C 0.157 3.843 13 C -0.111 4.111 14 H 0.113 0.887 15 C -0.176 4.176 16 H 0.112 0.888 17 C 0.185 3.815 18 N -0.621 5.621 19 C -0.239 4.239 20 H 0.081 0.919 21 C -0.063 4.063 22 N -0.946 5.946 23 Si 0.977 3.023 24 H -0.288 1.288 25 H -0.295 1.295 26 H -0.267 1.267 27 C 0.146 3.854 28 C -0.161 4.161 29 H 0.127 0.873 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.436 0.564 37 H 0.148 0.852 38 H 0.149 0.851 39 H 0.124 0.876 40 H 0.415 0.585 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.002 0.998 45 H 0.249 0.751 46 H 0.030 0.970 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.590 10.595 9.955 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.076 3.924 3 C -0.204 4.204 4 N -0.863 5.863 5 S 2.716 3.284 6 C -0.825 4.825 7 O -0.976 6.976 8 O -0.970 6.970 9 C 0.278 3.722 10 O -0.434 6.434 11 N -0.366 5.366 12 C 0.033 3.967 13 C -0.130 4.130 14 H 0.131 0.869 15 C -0.196 4.196 16 H 0.130 0.870 17 C 0.060 3.940 18 N -0.345 5.345 19 C -0.368 4.368 20 H 0.098 0.902 21 C -0.256 4.256 22 N -0.594 5.594 23 Si 0.805 3.195 24 H -0.215 1.215 25 H -0.221 1.221 26 H -0.192 1.192 27 C 0.021 3.979 28 C -0.181 4.181 29 H 0.145 0.855 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.274 0.726 37 H 0.166 0.834 38 H 0.167 0.833 39 H 0.143 0.857 40 H 0.253 0.747 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.020 0.980 45 H 0.058 0.942 46 H 0.048 0.952 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.446 10.135 9.811 24.023 hybrid contribution 1.899 -0.642 -0.728 2.133 sum -17.547 9.493 9.083 21.921 Atomic orbital electron populations 1.22386 0.90990 1.04446 1.04234 1.20417 0.95922 0.95605 0.80407 1.22067 1.02988 0.90136 1.05212 1.55575 1.60331 1.34712 1.35730 1.04361 0.74012 0.74479 0.75583 1.30789 1.14447 1.17423 1.19833 1.93600 1.75020 1.83249 1.45714 1.93606 1.31229 1.85000 1.87120 1.21458 0.81549 0.78707 0.90456 1.90757 1.57329 1.59433 1.35913 1.46175 1.17589 1.55464 1.17379 1.20803 0.91695 0.96578 0.87614 1.22472 0.96066 0.93824 1.00638 0.86937 1.23869 0.95597 1.05851 0.94309 0.86986 1.20832 0.89764 0.86230 0.97209 1.45512 1.34340 1.19370 1.35312 1.19397 1.00485 0.92102 1.24817 0.90154 1.25641 0.99332 0.98532 1.02129 1.70083 1.31688 1.18078 1.39590 0.85090 0.77497 0.78614 0.78315 1.21487 1.22125 1.19183 1.21333 0.87224 0.98651 0.90715 1.23930 0.99548 0.92373 1.02200 0.85501 0.90125 0.91665 0.89587 0.88377 0.89783 0.90277 0.72580 0.83386 0.83283 0.85723 0.74719 0.90558 0.90748 0.92702 0.98016 0.94178 0.95213 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 6.66 71.98 0.48 -2.02 16 2 C 0.17 2.06 1.08 2.86 0.00 2.06 16 3 C -0.15 -1.07 8.57 71.98 0.62 -0.45 16 4 N -1.10 -10.91 4.71 -155.19 -0.73 -11.64 16 5 S 2.62 40.27 5.99 -56.49 -0.34 39.93 16 6 C -0.67 -8.56 8.94 113.37 1.01 -7.54 16 7 O -0.99 -21.38 18.08 -127.65 -2.31 -23.69 16 8 O -0.98 -21.04 14.65 -127.65 -1.87 -22.91 16 9 C 0.49 8.32 4.13 87.65 0.36 8.68 16 10 O -0.56 -13.65 16.25 -3.03 -0.05 -13.70 16 11 N -0.71 -10.20 3.06 -463.05 -1.42 -11.61 16 12 C 0.16 2.96 5.81 86.38 0.50 3.46 16 13 C -0.11 -2.62 5.40 -10.80 -0.06 -2.68 16 14 H 0.11 2.56 8.04 -2.38 -0.02 2.54 16 15 C -0.18 -5.89 6.84 -9.94 -0.07 -5.96 16 16 H 0.11 3.58 8.14 -2.38 -0.02 3.56 16 17 C 0.19 8.62 5.76 86.56 0.50 9.11 16 18 N -0.62 -30.73 3.38 -688.53 -2.33 -33.06 16 19 C -0.24 -13.11 10.36 84.03 0.87 -12.24 16 20 H 0.08 4.23 7.85 -2.91 -0.02 4.20 16 21 C -0.06 -3.50 5.39 84.86 0.46 -3.04 16 22 N -0.95 -55.73 10.79 21.65 0.23 -55.49 16 23 Si 0.98 44.83 29.57 68.60 2.03 46.85 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 25 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.15 5.49 7.04 86.53 0.61 6.10 16 28 C -0.16 -4.68 6.74 -9.94 -0.07 -4.75 16 29 H 0.13 3.17 8.12 -2.38 -0.02 3.15 16 30 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 31 H 0.06 1.25 6.25 -2.39 -0.01 1.23 16 32 H 0.09 1.20 8.06 -2.39 -0.02 1.18 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.44 2.13 8.58 -96.74 -0.83 1.30 16 37 H 0.15 1.64 6.32 -2.39 -0.02 1.62 16 38 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.12 1.79 6.40 -2.39 -0.02 1.77 16 40 H 0.41 4.01 7.29 -92.71 -0.68 3.34 16 41 H 0.08 1.47 7.93 -2.39 -0.02 1.45 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.05 2.97 6.35 -2.39 -0.02 2.95 16 44 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 45 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 46 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -78.17 381.40 -2.07 -80.24 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -0.51 Total: 14.35 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: 5.22 Total: -9.27 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -4.24 Total: -111.81 kcal Atomic # 8 Polarization: -56.07 SS G_CDS: -4.23 Total: -60.30 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 16 Polarization: 40.27 SS G_CDS: -0.34 Total: 39.93 kcal Total: -78.17 -2.07 -80.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506817376.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.593 kcal (2) G-P(sol) polarization free energy of solvation -78.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds