Wall clock time and date at job start Wed Apr 1 2020 03:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47304 * 2 1 4 4 H 1.09009 * 109.47078 * 305.00245 * 3 2 1 5 5 N 1.46905 * 109.47077 * 64.99640 * 3 2 1 6 6 C 1.46898 * 111.00183 * 205.00055 * 5 3 2 7 7 C 1.52992 * 109.47192 * 179.97438 * 6 5 3 8 8 H 1.08999 * 109.55533 * 305.13039 * 7 6 5 9 9 C 1.53295 * 109.51708 * 185.00188 * 7 6 5 10 10 N 1.47154 * 108.38821 * 187.77717 * 9 7 6 11 11 C 1.34771 * 120.97922 * 230.51376 * 10 9 7 12 12 O 1.21286 * 120.00520 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99939 * 180.02562 * 11 10 9 14 14 S 1.80997 * 109.47294 * 179.97438 * 13 11 10 15 15 C 1.76203 * 100.00146 * 179.97438 * 14 13 11 16 16 H 1.08000 * 120.00148 * 0.02562 * 15 14 13 17 17 C 1.38795 * 120.00232 * 179.97438 * 15 14 13 18 18 N 1.31633 * 119.99791 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00164 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47465 * 59.99602 * 19 17 15 21 21 H 1.48502 * 109.47358 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47087 * 299.99708 * 19 17 15 23 23 C 1.47150 * 118.03405 * 50.53763 * 10 9 7 24 24 C 1.53297 * 108.38316 * 309.46059 * 23 10 9 25 25 O 1.42962 * 109.50846 * 65.20558 * 7 6 5 26 26 C 1.50701 * 109.47456 * 184.99956 * 3 2 1 27 27 N 1.34775 * 120.00020 * 60.00107 * 26 3 2 28 28 O 1.21276 * 119.99920 * 240.00087 * 26 3 2 29 29 H 1.09000 * 109.46950 * 60.00218 * 1 2 3 30 30 H 1.09004 * 109.46953 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46920 * 300.00039 * 1 2 3 32 32 H 1.08998 * 109.47369 * 239.99685 * 2 1 3 33 33 H 1.09000 * 109.47056 * 120.00327 * 2 1 3 34 34 H 1.00898 * 111.00210 * 328.95965 * 5 3 2 35 35 H 1.08999 * 109.46636 * 60.00237 * 6 5 3 36 36 H 1.08995 * 109.47262 * 300.00205 * 6 5 3 37 37 H 1.08997 * 109.67924 * 68.04615 * 9 7 6 38 38 H 1.09003 * 109.70818 * 307.52359 * 9 7 6 39 39 H 1.09003 * 109.47163 * 299.99525 * 13 11 10 40 40 H 1.09000 * 109.47257 * 59.99607 * 13 11 10 41 41 H 0.97003 * 119.99726 * 179.97438 * 18 17 15 42 42 H 1.09000 * 109.67857 * 189.74588 * 23 10 9 43 43 H 1.08996 * 109.71222 * 69.20460 * 23 10 9 44 44 H 1.09002 * 109.51172 * 172.23104 * 24 23 10 45 45 H 1.08997 * 109.51619 * 292.33217 * 24 23 10 46 46 H 0.97011 * 119.99608 * 359.97438 * 27 26 3 47 47 H 0.96989 * 120.00441 * 180.02562 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8419 5 7 1.6513 2.0993 1.2552 6 6 1.5725 3.5562 1.0846 7 6 1.1655 4.2036 2.4097 8 1 0.2373 3.7557 2.7646 9 6 0.9614 5.7087 2.2030 10 7 0.7562 6.3344 3.5190 11 6 -0.2886 7.1562 3.7411 12 8 -1.0771 7.3893 2.8495 13 6 -0.4772 7.7856 5.0973 14 16 -1.9565 8.8283 5.0782 15 6 -1.9359 9.4192 6.7380 16 1 -1.1512 9.1088 7.4120 17 6 -2.9276 10.2843 7.1791 18 7 -3.8832 10.6638 6.3571 19 14 -2.9053 10.9113 8.9385 20 1 -1.6444 11.6567 9.1826 21 1 -4.0638 11.8144 9.1570 22 1 -2.9899 9.7617 9.8748 23 6 1.7259 6.0367 4.5851 24 6 1.8926 4.5155 4.6759 25 8 2.1958 3.9960 3.3789 26 6 3.5419 1.4443 -0.1238 27 7 4.1298 0.8912 -1.2031 28 8 4.2216 1.9435 0.7477 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.7798 1.7282 1.6027 35 1 0.8307 3.7930 0.3220 36 1 2.5454 3.9391 0.7765 37 1 0.0862 5.8777 1.5756 38 1 1.8430 6.1372 1.7262 39 1 -0.5931 7.0036 5.8478 40 1 0.3934 8.3952 5.3392 41 1 -4.5764 11.2682 6.6655 42 1 1.3568 6.4228 5.5352 43 1 2.6849 6.4977 4.3490 44 1 2.7058 4.2787 5.3621 45 1 0.9674 4.0689 5.0398 46 1 3.5861 0.4915 -1.9001 47 1 5.0964 0.8920 -1.2827 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570131519.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:27 Heat of formation + Delta-G solvation = -111.596552 kcal Electronic energy + Delta-G solvation = -28066.754138 eV Core-core repulsion = 23989.990504 eV Total energy + Delta-G solvation = -4076.763634 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.31159 -39.90438 -38.17027 -36.75127 -34.62450 -34.22183 -33.31964 -32.43834 -31.37988 -29.47133 -28.35533 -26.97112 -25.52459 -24.64782 -23.18346 -22.68558 -21.39306 -20.35766 -19.22097 -17.80864 -17.73701 -17.45328 -16.89189 -16.65093 -16.09329 -15.81359 -15.46321 -15.12887 -14.88646 -14.81181 -14.76584 -14.56163 -14.18869 -13.98468 -13.68437 -13.52195 -13.36493 -13.09516 -12.67438 -12.49605 -12.44816 -12.36225 -11.98461 -11.83909 -11.52500 -11.41364 -11.30883 -11.05000 -11.04375 -10.78135 -10.64583 -10.14093 -10.07429 -9.95496 -9.82898 -9.39918 -9.06815 -8.71710 -8.44514 -8.25178 -6.51867 -6.22475 -3.93520 2.40969 2.81410 2.99764 3.08508 3.23158 3.24331 3.28461 3.53999 3.61553 3.76353 4.19352 4.29512 4.39157 4.53720 4.68547 4.71816 4.76229 4.81995 4.91622 4.97856 5.05438 5.11129 5.12081 5.13495 5.23635 5.27290 5.38682 5.45035 5.52302 5.52582 5.60768 5.69260 5.70661 5.76575 5.84375 5.90407 6.09061 6.40318 6.48819 6.56401 6.93782 7.06974 7.16403 7.48980 7.58424 8.05384 8.34006 8.49820 9.22650 10.84867 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.025474 B = 0.001919 C = 0.001873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.915902 B =14588.053866 C =14947.037172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.122 4.122 3 C 0.070 3.930 4 H 0.071 0.929 5 N -0.657 5.657 6 C 0.070 3.930 7 C 0.085 3.915 8 H 0.061 0.939 9 C 0.086 3.914 10 N -0.622 5.622 11 C 0.537 3.463 12 O -0.516 6.516 13 C -0.150 4.150 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 C 0.073 3.927 24 C 0.047 3.953 25 O -0.353 6.353 26 C 0.514 3.486 27 N -0.863 5.863 28 O -0.509 6.509 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.348 0.652 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.098 0.902 43 H 0.076 0.924 44 H 0.105 0.895 45 H 0.054 0.946 46 H 0.397 0.603 47 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.836 -23.165 -14.639 30.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.160 4.160 3 C -0.044 4.044 4 H 0.088 0.912 5 N -0.292 5.292 6 C -0.059 4.059 7 C 0.025 3.975 8 H 0.079 0.921 9 C -0.038 4.038 10 N -0.359 5.359 11 C 0.325 3.675 12 O -0.391 6.391 13 C -0.301 4.301 14 S 0.167 5.833 15 C -0.684 4.684 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.051 4.051 24 C -0.031 4.031 25 O -0.271 6.271 26 C 0.297 3.703 27 N -0.429 5.429 28 O -0.382 6.382 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.169 0.831 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.118 0.882 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.094 0.906 44 H 0.123 0.877 45 H 0.073 0.927 46 H 0.225 0.775 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 13.556 -22.379 -15.077 30.198 hybrid contribution 0.093 0.191 1.363 1.379 sum 13.649 -22.188 -13.714 29.439 Atomic orbital electron populations 1.21853 0.94738 1.02706 1.02241 1.21660 0.96760 0.94030 1.03594 1.21475 0.92668 0.96760 0.93468 0.91174 1.59898 1.38563 1.03702 1.27002 1.21972 1.02097 0.87407 0.94426 1.22383 0.91370 0.93853 0.89864 0.92104 1.22139 1.03337 0.92243 0.86073 1.48116 1.27346 1.48425 1.12044 1.20364 0.79376 0.77600 0.90148 1.90687 1.42888 1.59904 1.45583 1.23549 1.07179 1.03554 0.95810 1.85392 1.25686 1.55174 1.17095 1.22817 1.15000 1.33634 0.96954 0.90959 1.24993 0.94552 0.95384 0.98642 1.70010 1.12620 1.32372 1.35277 0.86219 0.77831 0.78716 0.82707 1.19919 1.20803 1.19917 1.22452 0.93456 0.97020 0.92174 1.22973 1.01939 0.92226 0.85964 1.88136 1.41226 1.79006 1.18777 1.20664 0.90730 0.77543 0.81337 1.43935 1.11368 1.63487 1.24100 1.90796 1.65084 1.43138 1.39135 0.92348 0.91699 0.92189 0.90782 0.90178 0.83058 0.93410 0.89426 0.88202 0.90928 0.89227 0.89159 0.92120 0.88398 0.90601 0.87668 0.92728 0.77478 0.76924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.63 9.74 37.16 0.36 -0.27 16 2 C -0.12 -0.55 5.47 -26.73 -0.15 -0.70 16 3 C 0.07 0.47 2.45 -68.86 -0.17 0.30 16 4 H 0.07 0.37 7.80 -51.92 -0.40 -0.03 16 5 N -0.66 -5.98 5.79 -107.95 -0.63 -6.60 16 6 C 0.07 0.69 5.05 -3.83 -0.02 0.67 16 7 C 0.08 0.98 2.96 -26.58 -0.08 0.90 16 8 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 9 C 0.09 1.13 5.93 -3.53 -0.02 1.11 16 10 N -0.62 -9.40 3.02 -172.28 -0.52 -9.92 16 11 C 0.54 10.43 7.73 -10.99 -0.08 10.34 16 12 O -0.52 -11.86 15.33 5.55 0.09 -11.78 16 13 C -0.15 -3.09 4.53 36.00 0.16 -2.92 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 15 C -0.54 -15.26 9.50 30.94 0.29 -14.97 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 18 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 19 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 20 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C 0.07 0.88 6.54 -3.53 -0.02 0.85 16 24 C 0.05 0.52 6.98 37.31 0.26 0.78 16 25 O -0.35 -4.61 10.34 -35.23 -0.36 -4.97 16 26 C 0.51 4.56 7.31 -10.99 -0.08 4.48 16 27 N -0.86 -3.96 8.74 31.22 0.27 -3.68 16 28 O -0.51 -7.23 16.76 5.56 0.09 -7.14 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.28 6.43 -51.93 -0.33 -0.06 16 32 H 0.07 0.19 7.43 -51.93 -0.39 -0.20 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.35 2.72 6.47 -39.29 -0.25 2.47 16 35 H 0.05 0.38 8.05 -51.93 -0.42 -0.04 16 36 H 0.09 1.01 7.62 -51.93 -0.40 0.61 16 37 H 0.10 1.39 7.08 -51.93 -0.37 1.02 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 1.69 7.66 -51.92 -0.40 1.29 16 40 H 0.09 1.73 8.02 -51.92 -0.42 1.31 16 41 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.10 1.13 6.05 -51.93 -0.31 0.81 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.40 0.57 8.19 -40.82 -0.33 0.23 16 47 H 0.40 1.64 8.93 -40.82 -0.36 1.28 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -38.59 395.29 -8.56 -47.15 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -7.31 Total: 1.30 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 0.36 Total: 2.58 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: -0.14 Total: -45.63 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.19 Total: -23.88 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.59 -8.56 -47.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570131519.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.447 kcal (2) G-P(sol) polarization free energy of solvation -38.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds